ID: mmu-mir-6899
GENE: Klf7(1)
chr1:64088962-64089211-


(1)
AGO.mut 		(10)
AGO2.ip 		(5)
B-CELL 		(35)
BRAIN 		(6)
CELL-LINE 		(2)
DCR.mut 		(3)
DGCR8.mut 		(9)
EMBRYO 		(5)
ESC 		(4)
FIBROBLAST 		(8)
HEART 		(2)
KIDNEY 		(13)
LIVER 		(2)
LUNG 		(3)
LYMPH 		(15)
OTHER 		(8)
OTHER.mut 		(1)
OVARY 		(2)
PANCREAS 		(3)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(7)
SPLEEN 		(21)
TESTES 		(2)
THYMUS 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CAGCACCAGGGGGCTTTATTTATTATTATTATTATTATTATCATTATTATTATTATTATTTTAAAAGTAATGTTCTATATTAGAGAATGTAGTCTACCAAGAAGGATCTGAGAGGCCATCTGCTGAGACTAGCCACCAGGCAGCAGAACGCAGCGGGCATGAGATCCTTTCTGACCATTGTCCTTCTGTGTCTTCTGCAGGTGAGAAGCCTTACAAGTGCTCATGGGAAGGATGCGAGTGGCGTTTTGCA
...........................................................................................................................................((((.((.((((((.((((((((((.....)))...))).))))..)))))))).))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206940(GSM723281)
other. (brain)		mjTestesWT1()
Testes Data. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjLiverWT3()
Liver Data. (liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR206941(GSM723282)
other. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverWT2()
Liver Data. (liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesWT3()
Testes Data. (testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR206942(GSM723283)
other. (brain)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR037937(GSM510475)
293cand2. (cell line)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAG..................................................231610.00610.00187.0046.0034.0034.0025.0031.0023.0020.0022.0017.0014.0022.00-15.005.0014.004.006.002.007.003.002.006.00--8.001.001.004.004.001.001.003.00-3.001.001.003.00-1.002.004.001.00--1.00----2.00---1.003.002.00--1.00--1.00--1.00-----2.001.002.00-2.001.00---1.00-1.00--1.00---1.001.001.00---1.00--------------1.00----------------1.001.00----1.00----1.00------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGT.................................................241121.00610.00-17.002.002.00-3.003.007.003.001.00--7.002.0013.001.006.004.002.001.001.001.00-3.001.00-2.002.00-2.00-3.00--1.00-1.00-3.001.001.00-1.00--1.00-----------------1.00---2.001.00---------------1.00--1.001.00---1.00---1.00---1.00--1.00--1.001.001.00-------1.00--1.00----1.00-----1.001.001.00-------1.001.00--1.00
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGA.................................................24183.00610.0012.00-9.00-12.006.002.00-1.00-1.00-1.001.002.002.00--2.001.001.001.00--1.00-1.00-1.001.001.00-1.006.00-4.00----1.00-1.00--2.00--1.00--1.00-------------1.00--1.00------------2.00---------------1.00-----------------------1.00-------------1.00---------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGC....................................................21167.0067.00--3.009.005.004.006.00-3.006.003.00--2.002.003.001.00--2.00-3.001.00-----1.00-2.001.002.00-------------1.00-------1.00----1.00-2.00-------------------------------1.001.00---------1.00----------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCA...................................................22122.0022.00--1.001.00--1.00-2.00-3.00-2.001.00----2.001.001.001.00------1.00-----1.00----------------1.00--1.00--------------1.00-------------------------------1.00-------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATT.................................................24122.0022.00--2.00--2.001.00---1.001.008.00--1.00--2.00-------2.00---------------1.00--------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTTCAG..................................................23115.002.0013.00--1.00----------------------------------------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCAG..................................................20214.0014.00--2.500.50----0.503.003.00--1.00----0.50-1.00-0.50-------0.50-------------------------0.500.50---------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAT..................................................23113.0022.001.00--1.003.00-------2.00---1.001.001.00-2.00----------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGA........................................................................................21111.0011.00------------------------1.00------------1.00----------1.00-----------------------1.00---1.00-1.00--------------------------------1.001.00----1.001.00----1.00---------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTA................................................2519.00610.00--2.00--------------------6.00--------------------------------------------------------1.00----------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATTA................................................2519.0022.00-------9.00-----------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAG.......................................................................................2217.007.00------------------------1.00--1.00------------------1.00-1.00----------------------------1.001.00-------1.00----------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTG.....................................................2017.007.00---------------------1.00--2.00--------------------------------1.00-------------------------1.00---------------1.00------------------------------------1.00--------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTT................................................2516.00610.00-----------------2.00-------------1.00--1.00---------------1.00------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCAGT.................................................2124.5014.00----------0.50---------------------------0.50-------------------------------------------0.500.500.50-----------------1.00------------------------------------1.00-----
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGCGAGT...........2814.004.00-----------------------------------------------2.00----2.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGCGA.............2614.004.00---------------------------1.00---------------2.00---------1.00-------------------------------------------------------------------------------------------
..................................................................................................................GCCATCTGCTGAGACTAG......................................................................................................................1814.004.00--------------------------------------------4.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAA..................................................2314.0022.00----4.00--------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TGAGAAGCCTTACAAGTGCTCATGGGA......................2713.003.00---------------------------2.00------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGCG..............2513.003.00-------------------------------------------1.00----------------1.00--1.00---------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAGA......................................................................................2312.002.00----------------------------------------------------------------2.00--------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGATT......................................................................................2312.0011.00-------------------------------------------------1.00----------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGT....................................................2112.007.00------------------------------1.00----------------------------------------------------------------------------------------------1.00-------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTAT...............................................2612.00610.00--------1.00---------------------------------------------------------------------------------------------------------------1.00------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCT......................................................1912.002.00------1.00---------1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATG.........................................................................................2012.002.00----------------------------------------------------------------------1.00---------------------------1.00----------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCCG..................................................2312.0067.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGC...............2412.002.00--------------------------------------------------------------------------2.00----------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATTT................................................2512.0022.00--1.00-------------1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGGGAAGGATGCGAGTGGCGTTTTGC.2612.002.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------1.00-------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGC.................................................2412.00610.00-----1.00------------------------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTTC....................................................2112.002.00---------1.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCT...................................................2212.0067.00---------------------1.00--------------------------------------------------------------------------------------------1.00------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCGG..................................................2312.0067.001.00-------------------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAT.......................................................................................2212.0011.00-------------------------------------------------------------------------------1.00-------------------------1.00---------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGATT...............................................2611.00610.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................TTACAAGTGCTCATGGGAAGGATGCG..............2611.001.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------------
.............................................................................................................GAGAGGCCATCTGCTGAGACT........................................................................................................................2111.001.00--------------------------1.00----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGAA...................................................2211.007.00----------------------------------------------1.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCA...........................................................................................1811.001.00----------------------------------------------------------------------1.00--------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCCG..................................................201.000.00---------------------------------------------------------------------------------------------------------------------------------1.00---------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTAG...............................................2611.00610.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGGAG..................................................2311.007.001.00------------------------------------------------------------------------------------------------------------------------------------------------
.................................ATTATTATCATTATTATTATTGGAT................................................................................................................................................................................................251.000.00----------------------------------------------------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CAAGTGCTCATGGGAAGGATGCGA.............2411.001.00-------------------------------------------------------------------------------------------------------------------1.00-----------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAC..................................................2311.0022.00----------------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ATTGTCCTTCTGTGTCTTCTGCA...................................................2311.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TGCTCATGGGAAGGATGCGAGTGGCGTT.....2811.001.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------------
..................................................................................................AAGAAGGATCTGAGAGGCCATCTGCTGAGACTAGC.....................................................................................................................3511.001.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATTAT...............................................2611.0022.00------------1.00------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AGCGGGCATGAGATCCAAA................................................................................191.000.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAATTT....................................................................................2511.0011.00------------------------------------------------------------------1.00------------------------------------------------------------------------------
...................................................................................................................................................................................GTCCTTCTGTGTCTTCTGCAGTA................................................231.000.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTC.......................................................1811.001.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAGT......................................................................................2311.007.00----------------------------------------------------------------------------------------------------------------------------------------------1.00--
.............................................................................................................................................AGCAGAACGCAGCGGGCATGT........................................................................................2111.002.00------------------------1.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCCGT.................................................2411.0067.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------
....................................................TTATTATTTTAAAAGTCGGC..................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------------------------------------------1.00-------------------------------
............................................................................ATATTAGAGAATGTAGTCTACCAAGA....................................................................................................................................................2611.001.00----------------------------------------------------------1.00--------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTACAA..................................................2311.002.001.00------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAAT.................................................2411.0022.00-----------------------------------------------------------------------------------------------------------------------------------------------1.00-
..................................................................................................................................................................................................................TTACAAGTGCTCATGGGAAGGA..................2211.001.00---------------------------------------1.00---------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ATTGTCCTTCTGTGTCTTCTGC....................................................2211.001.00------1.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAAT......................................................................................2311.0011.00-----------------------------------------------------------------------------1.00-------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGAA................................................2511.00610.00-------------------------------------------------------------------------------1.00-----------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAATT................................................2511.0022.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCGTT.................................................2411.0067.00------------1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCACT.................................................2411.0022.00---------------------------------------------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................................ACCAGGCAGCAGAACCA...................................................................................................171.000.00------------------------------------------------------------------------------------------------------------------------------1.00------------------
.........................................................................................................................................................................................................................TGCTCATGGGAAGGATGCGAGTGGC........2511.001.00-----------------------------------------------1.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTT.....................................................2011.002.00------------------------1.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGA....................................................2111.007.00--------------------------------------1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................TTACAAGTGCTCATGGGAAGGATGCGAGT...........2911.001.00------------------------------------------------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCAGTT................................................2220.5014.00---------0.50---------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CTTCTGTGTCTTCTGCAG..................................................1850.400.40-------------------------------------------------------------------------------------0.40-----------------------------------------------------------

Antisense strand
CAGCACCAGGGGGCTTTATTTATTATTATTATTATTATTATCATTATTATTATTATTATTTTAAAAGTAATGTTCTATATTAGAGAATGTAGTCTACCAAGAAGGATCTGAGAGGCCATCTGCTGAGACTAGCCACCAGGCAGCAGAACGCAGCGGGCATGAGATCCTTTCTGACCATTGTCCTTCTGTGTCTTCTGCAGGTGAGAAGCCTTACAAGTGCTCATGGGAAGGATGCGAGTGGCGTTTTGCA
...........................................................................................................................................((((.((.((((((.((((((((((.....)))...))).))))..)))))))).))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206940(GSM723281)
other. (brain)		mjTestesWT1()
Testes Data. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjLiverWT3()
Liver Data. (liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR206941(GSM723282)
other. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverWT2()
Liver Data. (liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesWT3()
Testes Data. (testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR206942(GSM723283)
other. (brain)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR037937(GSM510475)
293cand2. (cell line)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAG....................................................................................... 2212.002.00--------------------------------------------------------------------------------------------------------------------------1.00-----------1.00----------
...................TTATTATTATTATTATTATTATCATTCAGC......................................................................................................................................................................................................... 301.000.00---------------------------------------1.00---------------------------------------------------------------------------------------------------------