ID: mmu-mir-6897
GENE: Ugcgl1
chr1:36201047-36201296-


(1)
AGO.mut 		(2)
AGO1.ip 		(12)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(27)
BRAIN 		(5)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(16)
EMBRYO 		(7)
ESC 		(5)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(7)
LIVER 		(3)
LYMPH 		(14)
OTHER 		(1)
OTHER.ip 		(9)
OTHER.mut 		(6)
PIWI.ip 		(2)
PIWI.mut 		(2)
SKIN 		(8)
SPLEEN 		(34)
TESTES 		(3)
THYMUS 		(2)
TOTAL-RNA

Sense strand
TGGAGGCCGTGTATAGCCCAAGGGCGTGTCAGTTCTTAGAGCTAAAAATGTCTTCTTCTCTTAGGTTCGCTTTCAACCCTTAATACAGAAATAGCCAACACCAAGCTTCTACAGACCATCTGAAGCTACAGTGCTGTGCTGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTGTGTTCTTCCCCCAGGCTCTCAGAAGCATGAGGAATTATGATCTCTGGAGGAAGATGGGAAACCC
..........................................................................................................................................(((((((.((...((((.(((((.....(((....)))..))))).))))..)).)))))))..................................................
......................................................................................................................................135.....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		mjLiverWT1()
Liver Data. (liver)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553586(SRX182792)
source: Testis. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjLiverWT3()
Liver Data. (liver)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM416732(GSM416732)
MEF. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		mjLiverWT2()
Liver Data. (liver)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR073955(GSM629281)
total RNA. (blood)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR206942(GSM723283)
other. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTT........................................................................................231108.00108.0011.00--9.0010.005.00-4.004.004.00-1.00-2.00-5.00-3.001.00-1.003.00--2.00-3.002.002.00-1.00-3.00-1.00-2.00------3.00--2.003.001.00----------1.00--1.00----1.001.002.00-2.001.00-------1.002.00-----1.00----1.00--1.00---------1.001.00---1.00-1.00---------------1.00------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGT.........................................................................................22153.0053.008.00----2.00-2.001.001.005.006.00-----2.001.00-5.002.00-4.00---1.00---2.00--2.00----------------------------1.00-1.00------------------1.00---1.00--------1.00-----1.00----1.00-----------1.00-----------1.00--------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTGTGTTCTTCCCCCAGT.................................................6223.000.00-23.00-------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTT.......................................................................................24119.0019.004.00--2.00---1.00-----1.00----2.00--------1.00---1.00-----1.00----------------------1.001.00------1.00-----------------1.00---------------1.00----------1.00---------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTGT.........................................................................................23114.0014.003.00--2.001.001.00---2.00-----1.00--1.00-------------------------------------------------------1.00-----------------------------------------1.00----------------------1.00-
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGA..........27113.0013.00--4.00---3.00---------------3.00---------------------2.00--------------------------------------1.00---------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCT...........................................................................................20111.0011.00-------1.00------1.00-------------1.00-----1.00-1.00-----------------1.00------------------1.00----2.00-----------1.00--------------------------------1.00-----------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTA.......................................................................................2418.00108.003.00---1.00---------1.00--------1.00-------------------------------------------------------------------1.00--------------------------1.00----------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTGTT........................................................................................2418.008.00------------7.00------------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTG..........................................................................................2118.008.004.00-----------------------1.001.00--1.00------------------------------------------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................................ATGATCTCTGGAGGAAGAT.........1918.008.00-----1.00--4.00----3.00-------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGATG........2716.006.00--1.00-------------------1.00------------------2.00------------------------1.00------------------------------------------------------1.00-------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAAG...............................................216.000.00-------------------6.00-------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TGCTGGGGGCAGTGTCACACGCT...........................................................................................2316.006.001.00--------1.001.00------1.001.00-------------------------------------------------------------1.00------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGC............................................................................................1915.005.00--------------1.00------------------------------1.00-------1.00-------------------------1.00------------------------------------------------------1.00------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGT.................................................225.000.00--------------------------1.00-------------------------------2.001.00-------------------------------------------------1.00-------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCT...........................................................................................2115.005.00-------------------------1.00-1.00--------------1.00---------------------------------------------------1.00----------------------------------1.00-----------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGA..........2014.004.00-------------2.00------------------------------------1.00--------------------------------------------------------------------1.00---------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTAT......................................................................................2514.00108.003.00-----------------------------1.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGTCTGTGTTCTTCCCCCATTT................................................224.000.00---2.00--------------------------1.00-------------------------------------------------------------------------1.00------------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTGTTT.......................................................................................2514.004.001.00-----------1.00--------------------------------------1.00----------------------1.00------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGAAAC..2514.004.00---------------------------------1.00-1.00-------------1.00-----------------------------------------------------------------------------------1.00-------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAA...1813.003.00----------------2.00----------------------------------------------------------------------------1.00-----------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAA....2613.003.00--1.00-------------------------------------1.00------------------------------------------1.00---------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGAT.........2813.003.00--2.00-------------------1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAAGT..............................................223.000.001.00----2.00---------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGTCTGTGTTCTTCCCCCAGT.................................................213.000.00--------------2.001.00-----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTT......................................................................................2513.003.001.00--------------------------------------2.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GGAATTATGATCTCTGGAGGAAGATGT.......2713.003.00--2.00--------------------------------1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGATGT.......2813.006.00--1.00------------------------------2.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACG.............................................................................................1813.003.00---------------------------------------------2.00--------1.00--------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGA.........................................................................................2213.008.00--------------------------------------2.00----------------------------------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................................GGAATTATGATCTCTGGAGGAAGATG........2613.003.00--1.00---1.00---------------------------------------------------------------------------------------------1.00----------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAACC.2013.003.00----------------1.00------------------------------------1.00---------------------1.00-----------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTAA.......................................................................................2412.0053.00------------------------1.00------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGG..............1712.002.00-------------------------------------------------------1.00---------------------------------------------------------------------------1.00---------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTA........................................................................................2312.0053.00----------------------------------------------------2.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GGAATTATGATCTCTGGAGGAAGATGG.......2712.002.00--1.00------------------------------------------------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAG...........2612.002.00-------------------------------------------------1.00-----------1.00-------------------------------------------------------------------------------
............................................................................................................................................GGGGGCAGTGTCACACGCTGTT........................................................................................2212.002.00----------------------------------------------------------------2.00----------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAATT..2812.003.00------1.00----------------------------------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCTGA........................................................................................................202.000.00-----------------------------------------------------------------------------1.00---------------------------------------1.00-----------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAGA...............................................212.000.00--------------------------------------------------------2.00------------------------------------------------------------------------------------
.............................................................................................................................................GGGGCAGTGTCACACGCTGTT........................................................................................2112.002.00--------------------------------1.00---------------------------------------------------------------------------------1.00--------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAAC..1912.002.00----------------1.00----------------------------------------------------------------------------------------------------------------------1.00-----
.......................................................................................................................................................................................................................................GGAGGAAGATGGGAAACC.1822.002.00----------------1.00----------------------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGA.................................................222.000.00---------------------------------------------------------------------------1.00----------------------------------------------1.00------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGGAAGATGGG......2512.002.00------1.00------------------------------------------------------------------------------------------------------------1.00-------------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGGAAGATGG.......2412.002.00----------------------------------------------------------------------2.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGATG........2912.002.00------1.00-----------------------------------------------------------1.00--------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCTCT........................................................................................................201.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGA.............2411.001.00-----------------------------------------------------------------------------------------1.00---------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGAT.........2611.001.00----------------------------------------------------------------------------------------------------------------------------------1.00----------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGTAA...............................................241.000.00-------------------------------------------------------------------1.00-------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCTG.........................................................................................................191.000.00-----------------------------------------------------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAAGATGGGAAT...261.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTTATG...................................................................................2811.001.00------------------------------------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGGGGAAA......................................................................................................221.000.00-----------------------------------------------------------------------------------------------------1.00---------------------------------------
..................................................................................................CACCAAGCTTCTACAGACCA....................................................................................................................................2011.001.00-----------------------------------------------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTAC......................................................................................2511.00108.00-------1.00-------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................GCTGGGGGCAGTGTCACACGCT...........................................................................................2211.001.00----1.00----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAA............2511.001.00-----------------------------------1.00---------------------------------------------------------------------------------------------------------
.................................................................................................................................................................TTTATGACGTAAGTCTCACGGA...................................................................221.000.00--------------------------------------------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGTTTT..............................................221.000.00------------------------------------------1.00--------------------------------------------------------------------------------------------------
..............................................................AGGTTCGCTTTCAACCCTT.........................................................................................................................................................................1911.001.00------------------------------------------------------------------------1.00--------------------------------------------------------------------
......................................................................................................................................................................................................................................TGGAGGAAGATGGGAAAC..1811.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AATTATGATCTCTGGAGGAAGATGGGAAACC.3111.001.00-----------------------------------------------------------------------------------------------------------------------------1.00---------------
......................................................................................................................................................................................................................................TGGAGGAAGATGGGAAACCC2011.001.00-------------------------------------------------------------------------------------1.00-------------------------------------------------------
......................................................................................................................TCTGAAGCTACAGTGCTGTGCTGGGGGC........................................................................................................2811.001.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTAAA........................................................................................2311.0011.00---------------------------------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGAA....2311.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAAGATGGGA.....2411.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00---
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAAAT..............................................221.000.00----------------------------------------------------------------------------1.00----------------------------------------------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGTACA..............................................251.000.00--------------------------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGAAA...2411.001.00---------------------------------1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCC.....................................................1811.001.00------------------------------------------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTCTT........................................................................................2311.0011.00----1.00----------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AATTATGATCTCTGGAGGTCGT..........221.000.00----------------------------------------------1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCAAC...................181.000.00------------------------------1.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGA..........2511.001.00------------------------------------------------------------------------------------------------1.00--------------------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACAC..............................................................................................1811.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................ATGATCTCTGGAGGAAGATGAG......221.000.00-------------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CTCTGGAGGAAGATGGGAAA...2011.001.00---------1.00-----------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TCACGGTCTGTGTTCTTCCCCCATA.................................................251.000.00------------------------------------------------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ATCTCTGGAGGAAGATGGGAA....2111.001.00-------------------------------------------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CATGAGGAATTATGATCTCTGGAGG..............2511.001.00----------1.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCGGA........................................................................................................201.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
..........................................................................................................TTCTACAGACCATCTATCA.............................................................................................................................191.000.00----------------------------------------------------------------------------1.00----------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGACTG.........................................................................................................191.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAACG.2011.002.00----------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGA.....2211.001.00----------------------------------------1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGCTCTCAGAAGCATGAGGAATT............................2311.001.00--------------------------------------------------------------------------------------------------1.00------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGA.................................................191.000.00--------------------------------------------------------------1.00------------------------------------------------------------------------------
.......................................................................................................................................GTGCTGGGGGCAGTGTCACACGCT...........................................................................................2411.001.00------------------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAGGAATTATGATCTCTGGAGGAAGA..........2611.001.00------1.00--------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAAAC..2811.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGGAAGATG........2311.001.00--------------------------------------------1.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGATGT.......3011.002.00------1.00--------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTTA.................181.000.00-------------------------------------------------------------------------------------------------------------------------------1.00-------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGT..........2711.002.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGCATGAGGAATTATGATCTCTGGAGGAAG...........3011.001.00---------------------------------------------------------------------------------------------------1.00-----------------------------------------
................................................................................................................................................................................................................................GATCTCTGGAGGAAGATGGGAAAC..2411.001.00------------------------------------------1.00--------------------------------------------------------------------------------------------------
........................................................................................................................................TGCTGGGGGCAGTGTCACACGCTGTTTTAT....................................................................................3011.001.00----------1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTGT......................................................................................2511.00108.001.00--------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTC..........................................................................................2211.005.00---------------------------------------------------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGTCC..........................................................................................................181.000.00----------------------------------------------------------------------------------1.00----------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGATT...271.000.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTG......................................................................................2511.0019.00---------------------------------------1.00-----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAACCC2111.001.00-------------------------------------------------------------------------------1.00-------------------------------------------------------------
..............................................................................................................................................................................................................................ATGATCTCTGGAGGAAGATGGGAAAC..2611.001.00----------------------------------------1.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGCATGAGGAATTATGATCT.....................2011.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAAA...2711.001.00----------------------------------------------------------------------------------------------------------------------------------------1.00----
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAAGATGGGAAA...2611.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGGT........................................................................................2311.008.00-----------1.00---------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAG................................................201.000.00----------------------------------------------------------------------------------------------------------------------------1.00----------------
............................................................................................................................................GGGGGCAGTGTCACACGCTGTTA.......................................................................................2311.002.00-------------------------------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGAGG.........................................................................................................191.000.00----------------------------------------------------------------------------------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................................GGAGGAAGATGGGAAACCCACA2220.500.50--------------------------------------------------0.50------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAA............1720.500.50-----------------------------------0.50---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GGAGGAAGATGGGAAACCC1920.500.50--------------------------------------------------------------------------------------------------------------------------------------------0.50
...................................................................................................................................................GTGTCACACGCTGT.........................................................................................1460.170.17------------------------------------------------------------------------------------0.17--------------------------------------------------------

Antisense strand
TGGAGGCCGTGTATAGCCCAAGGGCGTGTCAGTTCTTAGAGCTAAAAATGTCTTCTTCTCTTAGGTTCGCTTTCAACCCTTAATACAGAAATAGCCAACACCAAGCTTCTACAGACCATCTGAAGCTACAGTGCTGTGCTGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTGTGTTCTTCCCCCAGGCTCTCAGAAGCATGAGGAATTATGATCTCTGGAGGAAGATGGGAAACCC
..........................................................................................................................................(((((((.((...((((.(((((.....(((....)))..))))).))))..)).)))))))..................................................
......................................................................................................................................135.....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		mjLiverWT1()
Liver Data. (liver)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553586(SRX182792)
source: Testis. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjLiverWT3()
Liver Data. (liver)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM416732(GSM416732)
MEF. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		mjLiverWT2()
Liver Data. (liver)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR073955(GSM629281)
total RNA. (blood)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR206942(GSM723283)
other. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
...........................................................................................................................AGCTACAGTGCTGTGCT.............................................................................................................. 172.000.00-------------------------2.00-------------------------------------------------------------------------------------------------------------------
.............................................................TAGGTTCGCTTTCAAGGG........................................................................................................................................................................... 181.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................TGTTCTTCCCCCAGGCTA.............................................. 181.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00--
....................................................................................................................CATCTGAAGCTACAGTGC.................................................................................................................... 1811.001.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
.......CGTGTATAGCCCAAGT................................................................................................................................................................................................................................... 161.000.00------------------------------------------------------------------------------------------------------------------------------1.00--------------
.........TGTATAGCCCAAGGGAGT............................................................................................................................................................................................................................... 181.000.00---------------------------------------------------------1.00-----------------------------------------------------------------------------------