ID: mmu-mir-5710
GENE: Dnaja4(2)
chr9:54555990-54556239+


(8)
AGO2.ip 		(1)
B-CELL 		(31)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(4)
ESC 		(5)
FIBROBLAST 		(12)
HEART 		(3)
KIDNEY 		(6)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(11)
OTHER 		(1)
OTHER.ip 		(8)
OTHER.mut 		(3)
PIWI.ip 		(1)
PIWI.mut 		(6)
SPLEEN 		(1)
TDRD1.ip 		(34)
TESTES 		(4)
TOTAL-RNA 		(2)
UTERUS

Sense strand
AAATGACTGGGTAGCCAGGAGTTAGCTCTCCATCTTGGCAGGGACTAGTAGGATAGGTTGGTTTAATGACACATCGCTTCCTGTGGGGTAGGGCGGGTTCTGACCCAACTCTAGTGTTCCGGCCTCCAGAAGAGTCTTGGGACATAGTGTAAGGCAGTGGTCTGGCTAGTCCCACTAACTGGCTCTTTGTCCCTCGGCAGGCAAGAATGTTGTCCACCAGCTGTCAGTAACTCTGGAAGACTTATATAAT
.....................................................................................................................................(((..((((((.((.((.((..(((((.((....))..)))))..)).)).)).))))))..)))....................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553582(SRX182788)
source: Brain. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR553586(SRX182792)
source: Testis. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR206942(GSM723283)
other. (brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR206941(GSM723282)
other. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR206940(GSM723281)
other. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR206939(GSM723280)
other. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesWT1()
Testes Data. (testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAG.............................................................................................231163.00163.0015.0013.0020.0012.009.004.004.004.001.007.00-7.001.007.00-3.004.001.001.003.00-2.00-3.001.001.001.00-2.003.00--1.002.00--4.00-1.001.00--1.001.00--1.001.001.00--1.001.00-1.002.00--2.00---2.001.001.00------------1.00---1.00----------------------1.001.00-------1.00----1.00-1.00-1.00--1.00---------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCA..............................................................................................22136.0036.003.003.00--1.00-1.002.00-1.004.00-1.00--1.00---1.00----5.00--2.00-------------1.00-2.00--2.00---1.00-------------------1.00----------------1.00---------------------------1.00---1.00-1.00-------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAG.............................................................................................21129.0029.004.001.00-5.001.00-1.003.00-3.002.00------2.00------------1.00-----------1.00--1.00-------------------1.00----------------------1.00--1.00----------------1.00--------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGCAG....................................................2228.000.00------1.00---------1.002.00----3.001.00-2.001.00---1.002.001.00---------------2.00-----1.00-----------1.002.00--1.001.00-------1.00--1.00-----------1.00-----1.00----------------1.00-----------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGC...............................................................................................21122.0022.004.00--1.001.001.00-------------2.00---1.00-2.00-1.00---1.00------1.00-----------1.00---------1.00---1.00-1.00-------------1.00---------------------1.00--------------------------1.00-----
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGC....................................................22118.0018.006.002.00--2.001.00---2.00-2.00---1.00-------1.00-------------------------------------------------------------1.00-------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATGT31115.009.00--------7.00-----3.00-----1.00--------------3.00---------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATA..27114.0014.00--------2.00------1.00----4.00-------------1.00---------------------1.00------------2.00--------------------1.00------1.00-------------------------1.00-----------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCA...................................................23111.0011.001.002.00-----1.00--4.00-1.00--------------2.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGT............................................................................................22111.0011.00---1.00--1.001.00--------1.00----1.00--------2.00--------1.00-----------------------1.00------------1.00------------------------1.00---------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAG..................................................24110.0010.00-3.00--2.004.00--------------------------------------------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAT..................................................2419.0011.002.002.00----------1.00---------------------------1.00-1.00----2.00---------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAT.............................................................................................2319.0036.001.00---1.001.002.001.00---1.00---------------------------1.00--------------------------------------------------------1.00--------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAAT2919.009.00--------1.00-----1.00-----------------------------2.00----3.00----------------------1.00-----------------------------------------1.00--------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATA....2518.008.00--------------1.00---2.00---------------1.00---------------------1.00---------------1.00-------------------1.00-------------1.00----------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGG................................................................................................2018.008.00--7.00-----------------------------------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCAGT.................................................227.000.00----------------------------1.00-----------2.00----------------2.00-----------------------------------1.00----------------1.00------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAGT............................................................................................2417.007.00---5.00-----------1.00-------------------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAA.............................................................................................2316.0036.00------2.001.00----2.00-------------------1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CAAGAATGTTGTCCACCAGCTGTCAGT......................2715.005.00----------------------2.00----------2.00----------------------------------1.00------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGG.....................................................2115.005.00----1.00-------------1.00---------------------------------1.00---------------------------------------------1.00-----------------1.00------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAA.2815.005.00--------2.00-------------------------1.00---------1.00--------------------------------------------------------------1.00---------------------------
...............................................................................................................................................................................TAACTGGCTCTTTGTCCCTGCAG....................................................234.000.00-------------------------------------4.00-------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCA..............................................................................................2013.003.00---1.00---------------------1.00-------------------------------------------------------------------------------------1.00-----------------------
.......................................................................................................................................CTTGGGACATAGTGTAAGGCAG.............................................................................................2213.003.00-------1.00---------------------------------1.00--------------------------------------------------------------------------------------1.00------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATAT...2613.003.00------------------1.00---------------1.00--------------------------------------------------------------------------1.00-------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGA............................................................................................2212.0029.00-----------------1.00-------------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGA....................................................2212.005.00-------------2.00-------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAGA............................................................................................2412.00163.00-1.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATT..2712.003.00--------------1.00-----1.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAA.............................................................................................2112.003.00------1.001.00-------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCAGA.................................................222.000.00-------------------------------------------------------------2.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATGA3112.009.00--------------------1.00--------------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTA......2312.002.00-----------------------------------------------------------------1.00-----------------------------1.00---------------------------------------
..............................................................................................................................................................................................................................GTCAGTAACTCTGGAAGAC.........1911.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGAA...........................................................................................2311.0029.00------------1.00--------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGTCAG.............................................................................................2311.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGAAG....................................................221.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------
...........................................................................................GGCGGGTTCTGACCCCGC.............................................................................................................................................181.000.00-----------------------------------------------------------1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................CAAGAATGTTGTCCACCAGCTGT..........................2311.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------------
............................................................................................................................................................................................................................CTGTCAGTAACTCTGGA.............1711.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------------
....................................................................................................................................AGTCTTGGGACATAGTGTAAG.................................................................................................2111.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CTTGGGACATAGTGTAAGACAG.............................................................................................221.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................AGTAACTCTGGAAGACTTATAT...2211.001.00-----------------------------------------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................................AATGTTGTCCACCAGCTGTCAGTAACTCTG...............3011.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAAT.................................................2511.0011.00-------------------------------------------------------------------------1.00-------------------------------------------------------------
.................................................................................................................................................................................................................................AGTAACTCTGGAAGACTTATATAAT2511.001.00----------------------------------------------------------------------------------------------------------------1.00----------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCT...................................................2311.0018.00------------1.00--------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGCAA....................................................221.000.00--------------------------------------------------------------------1.00------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGC...............................................................................................1911.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGCCG....................................................221.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATGC3111.009.00--------------1.00------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAG.................................................................................................1911.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGT....................................................2211.005.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................ATCGCTTCCTGTGGGCATC...............................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------1.00---------------------------------------------
....................................................................................................................................................................................GGCTCTTTGTCCCTCTCC....................................................181.000.00-----------------------------------------------------------1.00---------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGTTTT.........................................................................................2511.0011.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAGATT...............................................2711.0010.00-----------------------------1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................AAGAATGTTGTCCACCAGCTGTCAGT......................2611.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAGC.................................................2511.0010.00--------------------------------------------------------------------------------------1.00------------------------------------------------
.......................................................................................................................................CTTGGGACATAGTGTAAGGCAGT............................................................................................2311.001.00-----------------------------------------------------------------------------------1.00---------------------------------------------------
..............................................................................................................................................................................................................................GTCAGTAACTCTGGAAGACTTATATA..2611.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCTGAA...................................................231.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AGAATGTTGTCCACCAGCTGTCAGT......................2511.001.00----------------------------------------------------------------------------------------------------------------------------1.00----------
.......................................................................................................................................................................................................GGCAAGAATGTTGTCCACCAGCT............................2311.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTTCAG....................................................221.000.00-----------------------------------------------------------------------1.00---------------------------------------------------------------
..........................................................................................................................................................................................................................AGCTGTCAGTAACTCTGGAAGACT........2411.001.00------------------1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CAGTAACTCTGGAAGACTTATATAAT2611.001.00-------------------------------------------------------------------------------------------------------------------------------1.00-------
........................................................................................................................................TTGGGACATAGTGTAAGTCAG.............................................................................................211.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCTG.....................................................211.000.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTGGCTCTTTGTCCCTGCAG....................................................211.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GTCAGTAACTCTGGAAGACTTAT.....2311.001.00------------------------------------------------------------------------------1.00--------------------------------------------------------
..................................................................................GTGGGGTAGGGCGGGGCAC.....................................................................................................................................................191.000.00------------------------------------------------------------------------------------1.00--------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATT3011.009.00------------------------------------------------------------------------------------------------------------------------------1.00--------
......................................................................................................................................TCTTGGGACATAGTGTAAGGTAG.............................................................................................2311.008.00-------------------------------------------------------------------------------------------------------1.00-------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGT.....................................................2111.001.00----------------------------1.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGACATAGTGTAAGGCAG.............................................................................................2011.001.00---------1.00-----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CAGTAACTCTGGAAGACTTATAT...2311.001.00---------------------------------------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCA...................................................2011.001.00------------------------------------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................................................................................................CAGTAACTCTGGAAGACTTATATAATGGT2911.001.00--------1.00------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCG......................................................2011.001.00--------------------------1.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTTGGC....................................................221.000.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................AGTAACTCTGGAAGACTTAT.....2011.001.00---------------------------------------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCAGTAA...............................................241.000.00-----------------------------------------------------1.00---------------------------------------------------------------------------------
....................................................................................................................................................................................................................TCCACCAGCTGTCAGTAACTCTGGAAGACTT.......3111.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCATT.................................................2511.0011.00------------------1.00--------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGCTGTCAGTAACTCTGG..............1820.500.50----------------------------------------------------0.50----------------------------------------------------------------------------------
..................................................................................................................................................................................................................TGTCCACCAGCTGTCAG.......................1720.500.50-----------------------------------------------------------------------------------------------------------------------------------0.50---
.......................................................................................................................................................................................................................................TCTGGAAGACTTATAT...1630.330.33------------------------------------------------------------------------------------------------------------------------------------0.33--
.................................................................................................................................................................................................................................AGTAACTCTGGAAGAC.........1660.170.17---------------------0.17-----------------------------------------------------------------------------------------------------------------
..............................................AGTAGGATAGGTTGG.............................................................................................................................................................................................1560.170.17--------------------------------------------------------------------------------------------------------------------------------------0.17

Antisense strand
AAATGACTGGGTAGCCAGGAGTTAGCTCTCCATCTTGGCAGGGACTAGTAGGATAGGTTGGTTTAATGACACATCGCTTCCTGTGGGGTAGGGCGGGTTCTGACCCAACTCTAGTGTTCCGGCCTCCAGAAGAGTCTTGGGACATAGTGTAAGGCAGTGGTCTGGCTAGTCCCACTAACTGGCTCTTTGTCCCTCGGCAGGCAAGAATGTTGTCCACCAGCTGTCAGTAACTCTGGAAGACTTATATAAT
.....................................................................................................................................(((..((((((.((.((.((..(((((.((....))..)))))..)).)).)).))))))..)))....................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553582(SRX182788)
source: Brain. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR553586(SRX182792)
source: Testis. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR206942(GSM723283)
other. (brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR206941(GSM723282)
other. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR206940(GSM723281)
other. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR206939(GSM723280)
other. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesWT1()
Testes Data. (testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
.................................................................................................................................................................................ACTGGCTCTTTGTCCGAGA...................................................... 191.000.00--------------------------------------------------------------------------1.00------------------------------------------------------------
...................................................................................................................GTTCCGGCCTCCAGAATA..................................................................................................................... 181.000.00--------------------------------1.00------------------------------------------------------------------------------------------------------
...........................CTCCATCTTGGCAGGGACTAGTAGGACGC.................................................................................................................................................................................................. 291.000.00---------------------------------------------------------------------------1.00-----------------------------------------------------------
........................GCTCTCCATCTTGGCAGG................................................................................................................................................................................................................ 1820.500.50----------------------------------------------------------------------------------------------------------------------------------0.50----
.......................................................GGTTGGTTTAATGAC.................................................................................................................................................................................... 1540.250.25-------------------------------------------------------------------------0.25-------------------------------------------------------------
........................................................................................................................................................................................................................CCAGCTGTCAGTAACTCT................ 1840.250.25-------------------------------------------------------------------------------------------------------------------------------------0.25-
.........................................................................................AGGGCGGGTTCTGA................................................................................................................................................... 14100.100.10--------------------------------------------------------------------------0.10------------------------------------------------------------