ID: uc011lxl.59
GENE: COL27A1(59)
chr9:117072629-117072878+


(2)
B-CELL 		(3)
BREAST 		(12)
CELL-LINE 		(9)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(4)
UTERUS

Sense strand
AGTTACAGTGATGTTCATGACAGCATTCCTTACAAGAATAAAAAGAGTGGAAGCAATCTAAATGTGCCATATAGGTCATTGCTACAATGAAATACAGTATAGCCATTAAAAATTGTGAGGAAAGATGGAAGGGAAAATGCTCATGATGTATGATAAGAATCACGATGGATGTACGTGTGCACTTTTCCTTCTGCCTTCAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGA
.......................................................................................................................((.((..((((((((((.(((.((((((((.((((....))))......)))).)))).))).))))))))))..))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040017(GSM532902)
G645T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR040023(GSM532908)
G575T. (cervix)		SRR189782SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR040014(GSM532899)
G623N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577453(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................AAAGATGGAAGGGAAAATGCT.............................................................................................................21127.0027.009.003.002.002.001.00---2.00--2.001.00--1.00------1.00---1.00--1.00---------------1.00----
.........................................................................................................................AAGATGGAAGGGAAAATGCTCA...........................................................................................................2218.008.00------2.00--------1.001.00----------1.00--------1.00-1.00----1.00------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTCA...................................................2218.008.001.00----3.00----2.00--------------------------1.00---1.00--------
.........................................................................................................................AAGATGGAAGGGAAAATGCT.............................................................................................................2017.007.002.00-1.00----1.00----1.00-1.00--------1.00--------------------------
........................................................................................................................AAAGATGGAAGGGAAAATGC..............................................................................................................2017.007.005.001.001.00-----------------------------------------------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTCAG..................................................2313.003.00---------1.00-----------1.00---1.00------------------------
........................................................................................................................AAAGATGGAAGGGAAAATGCTC............................................................................................................2213.003.002.001.00------------------------------------------------
........................................................................................................................AAAGATGGAAGGGAAAATGCTA............................................................................................................2213.0027.002.00--1.00----------------------------------------------
........................................................................................................................AAAGATGGAAGGGAAAATG...............................................................................................................1923.003.00-0.501.00----0.50------1.00-----------------------------------
........................................................................................................................AAAGATGGAAGGGAAAATGCTCATG.........................................................................................................2512.002.002.00-------------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAATGCTCAA..........................................................................................................2312.008.00---2.00----------------------------------------------
..........................................................................................................................AGATGGAAGGGAAAATGCTCAT..........................................................................................................2212.002.002.00-------------------------------------------------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTCAGT.................................................2412.003.00-------------2.00------------------------------------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTC....................................................2121.501.50----------------0.50------------------------------0.500.50-
...................................................................................................................................................................................................................CCGCTGGCATCAGACCGA.....................181.000.00--------------------------------1.00-----------------
........................................................................................................................AAAGATGGAAGGGAAAATGCTCATT.........................................................................................................251.000.00------1.00-------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAATGC..............................................................................................................1911.001.00----------------------------------1.00---------------
....................................................................................................................GAGGAAAGATGGAAGTCT....................................................................................................................181.000.00------------------------------------------1.00-------
.........................................................................................................................AAGATGGAAGGGAAAATGCTC............................................................................................................2111.001.00---------------------------------1.00----------------
....................................................................................................................................................................................ACTTTTCCTTCTGCCTTCAGT.................................................211.000.00----------------------------1.00---------------------
........................................................................................................................AAAGATGGAAGGGAAGCT................................................................................................................181.000.00--------------------1.00-----------------------------
........................................................................................................................................................................ATGTACGTGTGCACTTTTCCTTCTGCCTTCAG..................................................3211.001.00---------1.00----------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAATGCTCAT..........................................................................................................2311.001.00----1.00---------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAAAGCT.............................................................................................................201.000.001.00-------------------------------------------------
......................................................................................................................GGAAAGATGGAAGGGATGGA................................................................................................................201.000.00-------------------------------1.00------------------
.............................................................................................................................TGGAAGGGAAAATGCTCATGATG......................................................................................................2311.001.00------------------1.00-------------------------------
..............................................................................................................................................................ATCACGATGGATGTACGTGTGCACTTT.................................................................2711.001.00----------------------------------------1.00---------
..........................................................................................................................AGATGGAAGGGAAAATGCTCATT.........................................................................................................2311.002.00-------1.00------------------------------------------
.......................................................................................................................................................................................................................TGGCATCAGACACTCTTCA................1911.001.00----1.00---------------------------------------------
.....................................................................................................................AGGAAAGATGGAAGGGAT...................................................................................................................181.000.00------------------------------1.00-------------------
...............................................................................................................................................................................TGTGCACTTTTCCTTCTGCC.......................................................2011.001.001.00-------------------------------------------------
..........................................................................................................................AGATGGAAGGGAAAATGCTCA...........................................................................................................2111.001.00----------------------------------------------1.00---
.........................................................................................................................AAGATGGAAGGGAAAATG...............................................................................................................1830.330.33--0.33-----------------------------------------------
..............................................................................................................................................................ATCACGATGGATGTA.............................................................................1530.330.33-----------------0.33--------------------------------

Antisense strand
AGTTACAGTGATGTTCATGACAGCATTCCTTACAAGAATAAAAAGAGTGGAAGCAATCTAAATGTGCCATATAGGTCATTGCTACAATGAAATACAGTATAGCCATTAAAAATTGTGAGGAAAGATGGAAGGGAAAATGCTCATGATGTATGATAAGAATCACGATGGATGTACGTGTGCACTTTTCCTTCTGCCTTCAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGA
.......................................................................................................................((.((..((((((((((.(((.((((((((.((((....))))......)))).)))).))).))))))))))..))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040017(GSM532902)
G645T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR040023(GSM532908)
G575T. (cervix)		SRR189782SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR040014(GSM532899)
G623N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577453(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................AAAAAGAGTGGAAGCAAT................................................................................................................................................................................................. 181.000.00------------------------1.00-------------------------
................................................................................................................................................................................................GCCTTCAGGTCCAAGGGT........................................ 181.000.00--------------------------------------------1.00-----
.....................................................................................................................................................................................................................................CTTCACCTTCCGGACCGGTG. 201.000.00---------------------------------------1.00----------
........................................................................................................................................................................................TTCCTTCTGCCTTCAGGC................................................ 181.000.00-------------------1.00------------------------------
.................................................................................................................................................................................................CCTTCAGGTCCAAGATGGT...................................... 191.000.00-----------------------------------1.00--------------
..............................................................................................................................GGAAGGGAAAATGCTGGAG......................................................................................................... 191.000.00-----------------1.00--------------------------------
....................................AATAAAAAGAGTGGAA...................................................................................................................................................................................................... 1690.220.22-------------------------------------------------0.22