ID: uc011ala.1
GENE: OSBP2(5)
chr22:31284010-31284259+


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
B-CELL 		(10)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(6)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGTGAATGCGTTGAAAGCACATGATTCTAGCAGAGGGAGCAAGGGTGGCCGCAGCCCAGGGAATCAGGGCTGCCCAGGTGACTGAAGCAGGAGGGGAGTGAGGCCAGATGGGGGTTGGGGGAGCCCTTGGCTCTGGACTTAGGGAGGCGAGATTGAGCCTTTTGTGAGGTTACAAATTAAAGCTCTGTCTGTGTCTCTAGGAAGCCTCTTGACTCCCAAAGGAGAGGACAGTGAGGAAGATGAAGATACC
...........................................................................................................................................((((((.((.((((.((((..((((((....)))))).....)))).)))))).))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040023(GSM532908)
G575T. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577738(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577739(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577590(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTAGT.................................................22117.0014.00-2.002.001.00-2.00--1.00-1.001.00-1.00----1.002.00----1.00-------1.00-----------1.00--------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTAG..................................................21114.0014.00-2.003.00-----1.00--1.00----1.00--------1.00-------------1.001.00-1.00--------1.00-1.00-----
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTAGA.................................................22111.0014.00------4.00--3.001.00--------------------------------1.00-1.00----------1.00--
....................................................................................................................................CTGGACTTAGGGAGGCGAGATTGAGCCTTTTGTGAGGTTACAAATTAAAGCTCTGTCTGTGTCTCTAGAA................................................706.000.006.00----------------------------------------------------------
....................................................................................................................................................................................AGCTCTGTCTGTGTCTCTAGT.................................................2116.003.00---1.00-1.00-1.00------------2.00----------------1.00---------------------
........................................................................................................................................ACTTAGGGAGGCGAGATTGAGCCTTTTGTGAGGTTACAAATTAAAGCTCTGTCTGTGTCTCTAGT.................................................655.000.005.00----------------------------------------------------------
..........................................................................................................................................TTAGGGAGGCGAGATTGAG.............................................................................................1914.004.00-----------------------1.00---1.00-------1.00--1.00--------------------
....................................................................................................................................................................................AGCTCTGTCTGTGTCTCTAG..................................................2013.003.00-1.00--------------------------------1.00-------------------1.00----
....................................................................................................................................................................................AGCTCTGTCTGTGTCTCTAGTT................................................2213.003.00-----1.00---------1.001.00------------------------------------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCT....................................................1912.002.00-----------------1.00---------------1.00-------------------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTA...................................................2012.002.00---------------1.00---------------1.00---------------------------
....................................................................................................................................................................................AGCTCTGTCTGTGTCTCTAGA.................................................2112.003.00----------1.00----------------------------------------------1.00-
....................................................................................................................................................................................AGCTCTGTCTGTGTCTCTAGTAG...............................................2312.003.00-------2.00---------------------------------------------------
....................................................................................................................................................................................................................................CAGTGAGGAAGATGAAGA....1811.001.00------------1.00----------------------------------------------
...........................................................................................................................................TAGGGAGGCGAGATTGAGCCTT.........................................................................................2211.001.00-1.00---------------------------------------------------------
...................................................................................................................................................................................................................................ACAGTGAGGAAGATGTAGG....191.000.00----------------------------------------------1.00------------
.........................................................................................................................................CTTAGGGAGGCGAGATTGAGCCTTT........................................................................................2511.001.00--------------------------------------------------1.00--------
...............................................................................................................................................................................................................................GAGGACAGTGAGGAAGGC.........181.000.00-----------------------------1.00-----------------------------
...........................................................................................................................................TAGGGAGGCGAGATTGAGC............................................................................................1911.001.00-------------------------------------------------1.00---------
...................................................................................................................................................................................................................................ACAGTGAGGAAGATGAAGAT...2011.001.00--------------1.00--------------------------------------------
...............................................................................................................................................................................................................................GAGGACAGTGAGGAAGATGA.......2011.001.00----1.00------------------------------------------------------
........................................................................................................................................................................................................................CAAAGGAGAGGACAGTGAGGGA............2211.001.00-----------------1.00-----------------------------------------
...................................................................................................................TGGGGGAGCCCTTGGAGG.....................................................................................................................181.000.00----------------------1.00------------------------------------
...................................................................................................................................................CGAGATTGAGCCTTT........................................................................................1511.001.00-----------------------------------------------1.00-----------
......................................GCAAGGGTGGCCGCACGG..................................................................................................................................................................................................181.000.00----------------------------------------------------1.00------
..........................................................................................................................................TTAGGGAGGCGAGATTGAA.............................................................................................191.000.00------------1.00----------------------------------------------
........................................................................................................................................................................................................................CAAAGGAGAGGACAGTGAGGAAGA..........2411.001.00--------------1.00--------------------------------------------
........................................................................................................................................................................................................................CAAAGGAGAGGACAGTGAGG..............2011.001.00------------------------------------1.00----------------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTATT.................................................2211.002.00---1.00-------------------------------------------------------
..........................................................................................................................................................................................................................AAGGAGAGGACAGTGAGG..............1811.001.00--------1.00--------------------------------------------------
..................................................................................................................................................................................AAAGCTCTGTCTGTGTCTCTAG..................................................2211.001.00-------------1.00---------------------------------------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTTGT.................................................2211.002.00------------------1.00----------------------------------------
...........................................................................................................................................................................................................................AGGAGAGGACAGTGAGGAAGATGA.......2411.001.00-----------------------------------------1.00-----------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTAGTA................................................2311.0014.00---------------------1.00-------------------------------------
.........................................................................................................................................................................................................................AAAGGAGAGGACAGTGAGGAAGATGAAG.....2811.001.00---1.00-------------------------------------------------------
..........................................................................................................................................................................................GTCTGTGTCTCTAGGGGAA.............................................191.000.00------------------------------------------------1.00----------
................................................................................................................................................................................................................................AGGACAGTGAGGAAGATG........1840.250.25----------------------------------------------------------0.25

Antisense strand
GGTGAATGCGTTGAAAGCACATGATTCTAGCAGAGGGAGCAAGGGTGGCCGCAGCCCAGGGAATCAGGGCTGCCCAGGTGACTGAAGCAGGAGGGGAGTGAGGCCAGATGGGGGTTGGGGGAGCCCTTGGCTCTGGACTTAGGGAGGCGAGATTGAGCCTTTTGTGAGGTTACAAATTAAAGCTCTGTCTGTGTCTCTAGGAAGCCTCTTGACTCCCAAAGGAGAGGACAGTGAGGAAGATGAAGATACC
...........................................................................................................................................((((((.((.((((.((((..((((((....)))))).....)))).)))))).))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040023(GSM532908)
G575T. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577738(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577739(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577590(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
.......GCGTTGAAAGCACATGATTCTAGCAGA........................................................................................................................................................................................................................ 2711.001.00----1.00------------------------------------------------------
.................................................................................................................................GCTCTGGACTTAGGGAGGCGAGATTGAG............................................................................................. 2811.001.00----1.00------------------------------------------------------
.............AAAGCACATGATTCTAGCAGAGGG..................................................................................................................................................................................................................... 2411.001.00-------------------------------------------------------1.00---
.................................................................................................................................GCTCTGGACTTAGGGAGGCGAGATTGA.............................................................................................. 2711.001.00----1.00------------------------------------------------------
................................GAGGGAGCAAGGGTGGCCGCAGCCCACGC............................................................................................................................................................................................. 291.000.00----------------------------1.00------------------------------
.........................................................................................................................................................................................................................................AGGAAGATGAAGATATTAG 191.000.00------------------------------1.00----------------------------
...................................................................................................................................................................................AAGCTCTGTCTGTGTCTCTA................................................... 2011.001.00--------------------------1.00--------------------------------