ID: uc010yel.9
GENE: KIAA0691(9)
chr19:54651683-54651932+


(1)
AGO1.ip 		(3)
AGO2.ip 		(2)
BRAIN 		(7)
BREAST 		(27)
CELL-LINE 		(1)
FIBROBLAST 		(6)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN

Sense strand
GTGTGAGTGTTTTAAGCATGAAGGTGATTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGTCCCCAAGAGGGCAGGAGCAGGTGGGGGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACAAAGATGGAGCCTGAGGTGGGGGTGGTGAGGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTCCCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCA
...............................................................................................................................................(((.((((((..(((.((......((((....)))))).))).))))))...)))....................................................
...............................................................................................................................................144.....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037938(GSM510476)
293Red. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM956925Paz8D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGA.................................................22133.0013.001.004.001.003.00-1.00-1.00-1.00----3.002.001.00-1.00--2.001.002.00--1.00---1.00-1.001.00-1.00--1.00---1.00-----------1.001.00--------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGT.................................................22123.0023.002.002.002.00-1.001.00------1.003.00----1.00---------1.00-----1.00----1.001.00---1.00--1.00-1.00------1.00--1.001.00---
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAG..................................................21113.0013.00--2.00-2.00-----3.00------2.00---------1.00---1.00---------1.00-----------1.00----------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGC....................................................1917.007.001.00---1.001.00-------------2.00--1.00------1.00----------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCA...................................................2015.005.001.00----1.00-1.00---1.00-------------1.00--------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGC.................................................2215.0013.003.00--1.00-------1.00----------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTA................................................2314.0023.001.00--------1.00-1.001.00---------------------------------------------------
....................................................................................GGGGCAGCGAGGCCAGAGAGGAGGCTGCCGGG......................................................................................................................................322.000.00------2.00---------------------------------------------------------
..................................................................................................AGAGAGGAGGCTGCTGGGACA...................................................................................................................................2112.002.00--------------------2.00-------------------------------------------
....................................................................................................................................................GGAGACCAGCTGGCCCACTGGGC...............................................................................232.000.00--------2.00-------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTT................................................2311.0023.00-------1.00--------------------------------------------------------
.................................................................................................................................................................................CCTCTGCTCTCTCCCACCCGCA...................................................2211.001.00----------------------------------------------------1.00-----------
.............................................................................................AGGCCAGAGAGGAGGCGGGT.........................................................................................................................................201.000.00--------1.00-------------------------------------------------------
........................................................................................................................................................................................................................GCTCCAAGCCTGTCCACAGCAAC...........2311.001.00---------------------------------------------------1.00------------
.............................................................................................................................................TGGTGAGGGAGACCAGCTGGCGCA.....................................................................................241.000.00---------------------------------------------------------1.00------
.......................GTGATTGAAGCCATGAGGGT...............................................................................................................................................................................................................2011.001.00------------------------1.00---------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGA....................................................1911.001.00-------1.00--------------------------------------------------------
.............................................................................................................................................TGGTGAGGGAGACCAGCTGGCAGAT....................................................................................251.000.00-------------------------------------1.00--------------------------
..................TGAAGGTGATTGAAGCCATGAGGGTG..............................................................................................................................................................................................................2611.001.00------1.00---------------------------------------------------------
..................TGAAGGTGATTGAAGCCATGAGGGCGAG............................................................................................................................................................................................................281.000.00--------1.00-------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCTC....................................................1921.000.50---------1.00------------------------------------------------------
.............................................................................................................................................TGGTGAGGGAGACCAGCTGGCCCA.....................................................................................2411.001.00----------------------------------------------1.00-----------------
......................................................................................................AGGAGGCTGCTGGGACAAAGACGG............................................................................................................................241.000.00------1.00---------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCG.....................................................1811.001.00------------------------------------------------1.00---------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGAA................................................2311.0013.00----------------1.00-----------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTC................................................2311.001.00---1.00------------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTTA...............................................2411.0023.00---------------------------------------------1.00------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCT...................................................2011.007.00------------1.00---------------------------------------------------
.....................................................................................................GAGGAGGCTGCTGGGACAAAGATGGAGCCTGAGGTGGGGGTGGTGAGGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTCCCACCCGCA...................................................9811.001.00------------------------------------1.00---------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCC......................................................1720.500.50----0.50-----------------------------------------------------------
.....................................................................................................................CAAAGATGGAGCCTGA.....................................................................................................................1640.500.50------------------------0.25------------------------------------0.25--
....................................................................................................AGAGGAGGCTGCTGGGAAAAA.................................................................................................................................2170.140.14---------------------------------------------------------------0.14
....................................................................................................AGAGGAGGCTGCTGGGA.....................................................................................................................................1770.140.14-------------------------0.14--------------------------------------
........................................................................CAGGAGCAGGTGGGGGC.................................................................................................................................................................1780.120.12--------------------------0.12-------------------------------------

Antisense strand
GTGTGAGTGTTTTAAGCATGAAGGTGATTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGTCCCCAAGAGGGCAGGAGCAGGTGGGGGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACAAAGATGGAGCCTGAGGTGGGGGTGGTGAGGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTCCCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCA
...............................................................................................................................................(((.((((((..(((.((......((((....)))))).))).))))))...)))....................................................
...............................................................................................................................................144.....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037938(GSM510476)
293Red. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM956925Paz8D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
................................................................................GGTGGGGGCAGCGAGGCC........................................................................................................................................................ 1811.001.00----------------------------------------------------------1.00-----
.....................................................................................................................................................................................................................................CCACAGCAACCAGCACCCTCAT 221.000.00-------------------------------------------1.00--------------------
....................................................................................................................................................................................................................................TCCACAGCAACCAGCGATT... 191.000.00--------------------------------------------------1.00-------------
................................................AGGTCACCCAGGTCCC.......................................................................................................................................................................................... 1630.330.33---------0.33------------------------------------------------------
...............................................................................................................CTGGGACAAAGATGGA........................................................................................................................... 1640.250.25--------------------------------------------------------------0.25-