ID: uc010xqt.1
GENE: GATAD2A(1)
chr19:19602915-19603164+


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(3)
HELA 		(1)
KIDNEY 		(3)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
CTGGGATTGGGTGCCCTATGACGTGTGGGTAAGAAGAAGGAGGCAGCCTGGGAGCCATGGGGCAGGGCAGGGGATGTGGAGGATGCAGGGCAGACAGGGAACAGACGGGGAGGTCTCAGCTCCCTGCCATGTGTCCACAGGGGTGGGCACTGGGTCCAGCTGTCAAGGGCGCTCTGGTCACTACTGTCTCCACCCCACAGTGACATGAAGTCCGAGAGGAGACCCCCCTCACCTGACGTGATTGTGCTCT
...........................................................................................................................................((((((((((.(((..((((.(((.....)))..))))...))).)))..)))))))......................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR037935(GSM510473)
293cand3. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532875(GSM532875)
G547N. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR189787GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR189786GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
................................................................................................................................................................................GTCACTACTGTCTCCACCCCACAG..................................................24120.0020.00-15.004.00------------1.00------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAG..................................................23115.0015.001.00-6.00-2.00----2.00---------1.00----1.00---1.00-------------------1.00---------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACA...................................................22112.0012.005.00-1.00----------1.00--------1.00----1.00--1.00----1.00---1.00------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCC.............................................................................................21111.0011.0010.00----------------------------------------1.00----------------
..............................................................................................................................................................................TGGTCACTACTGTCTCCACCCCACT...................................................258.000.00---6.00--------2.00---------------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTC..............................................................................................2015.005.003.00-------------------------1.00------1.00------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCATAG..........................................................................................2413.005.003.00---------------------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGT.................................................2413.003.00------1.00----------------------1.00---------------1.00------------
................................................................................................................................................................................GTCACTACTGTCTCCACCCCACA...................................................2312.002.00--------------2.00-------------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCCG............................................................................................2212.0011.00-------2.00--------------------------------------------------
...........................................................................................................................................................................................................................AGACCCCCCTCACCTGA..............1712.002.00-----------2.00----------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCA.....................................................2012.002.00----1.00---------------1.00-------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGT...............................................................................................1912.002.00----------------------------------------1.00--------1.00--------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGA.................................................2412.0015.00--1.00---------------1.00---------------------------------------
....................................................................AGGGGATGTGGAGGATGCAGGGC...............................................................................................................................................................2311.001.00----------1.00-----------------------------------------------
.............................................................................................................................................................................................CCACCCCACAGTGACGTCT..........................................191.000.00-------------------------------------1.00--------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGAT................................................2511.0015.00--1.00-------------------------------------------------------
................................................................................................................................................................................GTCACTACTGTCTCCACCCCACAT..................................................2411.002.00--1.00-------------------------------------------------------
................................................................................................................................................................................GTCACTACTGTCTCCACCCCAC....................................................2211.001.00-------------------------1.00--------------------------------
...................................................................................................................................................................................ACTACTGTCTCCACCCCACA...................................................2011.001.00-----------------------1.00----------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAT..................................................2311.0012.00----1.00-----------------------------------------------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCCAGC..........................................................................................2211.001.00--------1.00-------------------------------------------------
...................................................................................TGCAGGGCAGACAGGGAACAGACGGG.............................................................................................................................................2611.001.00-----1.00----------------------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTAA.............................................................................................2111.002.00--------------------------------------------1.00-------------
.............................................................................................................................................................................................................TGAAGTCCGAGAGGAGA............................1711.001.00----------------------------------1.00-----------------------
........................................................................................................................................ACAGGGGTGGGCACTGGA................................................................................................181.000.00----------------------------------------------1.00-----------
...........................GGTAAGAAGAAGGAGGC..............................................................................................................................................................................................................1741.001.00---------------------------------------------------0.750.25-----
..........................................................................................................................................AGGGGTGGGCACTGGGTCC.............................................................................................1911.001.001.00---------------------------------------------------------
...................................................................................TGCAGGGCAGACAGGGAACAGACGG..............................................................................................................................................2511.001.00-----1.00----------------------------------------------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCAAGT..........................................................................................221.000.00-----------------1.00----------------------------------------
.........................................................TGGGGCAGGGCAGGGG.................................................................................................................................................................................1601.001.00-------------1.00--------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGC.................................................2411.0015.00------------------------------------1.00---------------------
.....................................................................................................................................................................................................................................CACCTGACGTGATTGTGCTCT2111.001.00-----------------------------------------------1.00----------
.................................................................................................................................................................................................................GTCCGAGAGGAGACCCCCCTCACCTGACG............2911.001.00---------------1.00------------------------------------------
....................................................................AGGGGATGTGGAGGATGCAGGGG...............................................................................................................................................................231.000.00----------1.00-----------------------------------------------
......................................................................................................................................................................................................................................ACCTGACGTGATTGTGCTC.1911.001.00-------------------------------1.00--------------------------
....................................................................................................................................................................................................................CGAGAGGAGACCCCCCTCACCTGACGTG..........2811.001.00----------------1.00-----------------------------------------
..............................................................................................................................................................................TGGTCACTACTGTCTCCACC........................................................2011.001.00--------1.00-------------------------------------------------
................TATGACGTGTGGGTAAGAAGAAGGA.................................................................................................................................................................................................................2511.001.00-----1.00----------------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACCA..................................................231.000.00--------------------------------------------------1.00-------
..........................................................................................................................................AGGGGTGGGCACTGGGTCCA............................................................................................2011.001.00-------------------------------------------1.00--------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCCAGAA.........................................................................................231.000.00------------------------------------------1.00---------------
...............CTATGACGTGTGGGTAAGAAGAAGGAGGC..............................................................................................................................................................................................................2911.001.00--------------------------------1.00-------------------------
..........................................................................TGTGGAGGATGCAGGGCAGACAGGGAAC....................................................................................................................................................2811.001.00---------------------1.00------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCCATA..........................................................................................241.000.00------1.00---------------------------------------------------
.................ATGACGTGTGGGTA...........................................................................................................................................................................................................................1440.250.25-----------------------------------------------------0.25----
..........................................................GGGGCAGGGCAGGGGAT...............................................................................................................................................................................1750.200.20-------------------------------------------------------0.20--
...............................................................................................................................................................CTGTCAAGGGCGCT.............................................................................1450.200.20------------------------------------------------------0.20---
.........................................................................................................................................................................................................................................TGACGTGATTGTGC...1490.110.11--------------------------------------------------------0.11-

Antisense strand
CTGGGATTGGGTGCCCTATGACGTGTGGGTAAGAAGAAGGAGGCAGCCTGGGAGCCATGGGGCAGGGCAGGGGATGTGGAGGATGCAGGGCAGACAGGGAACAGACGGGGAGGTCTCAGCTCCCTGCCATGTGTCCACAGGGGTGGGCACTGGGTCCAGCTGTCAAGGGCGCTCTGGTCACTACTGTCTCCACCCCACAGTGACATGAAGTCCGAGAGGAGACCCCCCTCACCTGACGTGATTGTGCTCT
...........................................................................................................................................((((((((((.(((..((((.(((.....)))..))))...))).)))..)))))))......................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR037935(GSM510473)
293cand3. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532875(GSM532875)
G547N. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR189787GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR189786GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
...........................................................................GTGGAGGATGCAGGGCACA............................................................................................................................................................ 191.000.00--------------------------------------1.00-------------------
.......................................................................GGATGTGGAGGATGCAG.................................................................................................................................................................. 1790.110.11----------------0.11-----------------------------------------
..................................................................................................................................................................TCAAGGGCGCTCT........................................................................... 13100.100.10---------------------------------------------------------0.10