ID: uc010wsc.7
GENE: CASKIN2(7)
chr17:73500512-73500702-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGAGGGCACTAATGGCCATGGCCCTGGCCTCCTGATTGAGAACGCCCAGGTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCAGCCACTGCCCTCTGCTGGAGAGGACCAGGTGCTGCCAGGACTCCACCCGCC
....................................................((((.(((((((.((.(((((((.(((((((............))).............)))).)))).))))))))))))))))......................................................
..................................................51........................................................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189786SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040008(GSM532893)
G727N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR189787DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343335RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189784SRR343334SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAGGATGATGGGGTCACGG.........................................................................................................................20117.0017.007.00--1.002.00--2.00--1.001.00--1.002.00-----------------------------------
..................................................GTAGGATGATGGGGTCACG..........................................................................................................................19112.0012.004.006.00-1.00------------------------------1.00----------------
..................................................GTAGGATGATGGGGTCACGGACCAGG...................................................................................................................26111.0011.00--7.00---1.001.00--------1.00--------1.00-------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCAG..................................................91110.0010.00--------5.005.00-----------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAG....................................................................................................................2519.009.00-1.004.002.00-------------1.00--1.00------------------------------
..................................................GTAGGATGATGGGGTCACGGACC......................................................................................................................2318.008.00--1.004.00----------1.00--1.00--------------1.00------------------
..................................................GTAGGATGATGGGGTCACGGAC.......................................................................................................................2217.007.00------1.001.00--2.001.001.00---------------------------1.00----------
..................................................GTAGGATGATGGGGTCACGGT........................................................................................................................2117.0017.007.00--------------------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGG..............................................................................................................3115.005.00-5.00-------------------------------------------------
..................................................GTAGGATGATGGGGTCACGGA........................................................................................................................2115.005.00------1.001.00---1.001.00------1.00-------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAG...............................................................................................................3013.003.00-3.00-------------------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGT...................................................................................................................2613.009.00----3.00----------------------------------------------
......................CCCTGGCCTCCTGATTGTATA....................................................................................................................................................213.000.00-------------------------------1.00-----------1.001.00------
..................................................GTAGGATGATGGGGTC.............................................................................................................................1612.002.00----------------1.00-------------1.00--------------------
..............................................................................................................................................................AGAGGACCAGGTGCTGCCAGG............2112.002.00------------------------1.00--------------1.00-----------
.................................TGATTGAGAACGCCCAG.............................................................................................................................................1712.002.00------------------2.00--------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGCT...........................................................................................................3412.002.00-----2.00---------------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCA................................................................................................................2912.002.00-1.00---1.00---------------------------------------------
...................................................TAGGATGATGGGGTCACGGACA......................................................................................................................221.000.00-------1.00-------------------------------------------
..................................................GTAGGATGATGGGGTCACGGAAA......................................................................................................................2311.005.00------------------------------------------1.00--------
...............................................CAGGTAGGATGATGGGGTCACG..........................................................................................................................2211.001.00-----------------------------------1.00---------------
.........................................................GATGGGGTCACGGACC......................................................................................................................1611.001.00------------------------------------1.00--------------
...................................................TAGGATGATGGGGTCACGGACCAG....................................................................................................................2411.001.00-----1.00---------------------------------------------
................................CTGATTGAGAACGCCCA..............................................................................................................................................1711.001.00------1.00--------------------------------------------
................................................................................................................................................................AGGACCAGGTGCTGCCGCTG...........201.000.00-------------------------------------1.00-------------
.................................TGATTGAGAACGCCCAGC............................................................................................................................................1811.002.00----1.00----------------------------------------------
........................................................................................................................CTCCTGCCCTGTCTCCTCCAT..................................................211.000.00----------------------1.00----------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGT..................................................................................................................2711.001.00---1.00-----------------------------------------------
....................................................AGGATGATGGGGTCACGGACC......................................................................................................................2111.001.00-----------------------------------------------1.00---
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCA...................................................9011.001.00--------------------------------------1.00------------
.............................CTCCTGATTGAGAACGCCCTG.............................................................................................................................................211.000.00---------------------------1.00-----------------------
..................................................GTAGGATGATGGGGTCACGGACA......................................................................................................................2311.007.00----1.00----------------------------------------------
..................................................GTAGGATGATGGGGTCACGGAA.......................................................................................................................2211.005.00------1.00--------------------------------------------
..................................................GTAGGATGATGGGGTCACGGAAG......................................................................................................................2311.005.00---1.00-----------------------------------------------
...................................................................................................................................................................ACCAGGTGCTGCCAGGACTCCACC....2411.001.00-----1.00---------------------------------------------
.........................................................................................................................................................GCTGGAGAGGACCAGGTGCT..................2011.001.00---------------------1.00-----------------------------
.............................CTCCTGATTGAGAACGCCCAGGTAGGATG.....................................................................................................................................2911.001.00----------1.00----------------------------------------
................................CTGATTGAGAACGCCCAGGTAGGATGATG..................................................................................................................................2911.001.00----1.00----------------------------------------------
..............................................................................................................................................................AGAGGACCAGGTGCTGCCATT............211.000.00---------------------------------1.00-----------------
........................................................................................................................CTCCTGCCCTGTCTCCGCC....................................................191.000.00-----------------------1.00---------------------------
........................................................................................................................................................TGCTGGAGAGGACCAGGGG....................191.000.00-----------------------------------------1.00---------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGC............................................................................................................3311.001.00-----------------------------1.00---------------------
....................................................AGGATGATGGGGTCACGGACCAGGTCAGA..............................................................................................................291.000.00------1.00--------------------------------------------
.......................................................................................................................GCTCCTGCCCTGTCTCCTCC....................................................2011.001.00--------------------------1.00------------------------
......................................................................................................................................................................AGGTGCTGCCAGGACTCC.......1811.001.00----------------------------------------------1.00----
.......................CCTGGCCTCCTGATTGTAT.....................................................................................................................................................191.000.00----------------------------1.00----------------------
.........................................................................................................................................................GCTGGAGAGGACCAGGTGCTGCCAGGACTCCACC....3411.001.00-----1.00---------------------------------------------
.......................................................................................................................................................................GGTGCTGCCAGGACTCCACC....2011.001.00-----1.00---------------------------------------------
..................................................GTAGGATGATGGGGT..............................................................................................................................1540.250.25-------------------------------------------------0.25-

Antisense strand
CTGAGGGCACTAATGGCCATGGCCCTGGCCTCCTGATTGAGAACGCCCAGGTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCAGCCACTGCCCTCTGCTGGAGAGGACCAGGTGCTGCCAGGACTCCACCCGCC
....................................................((((.(((((((.((.(((((((.(((((((............))).............)))).)))).))))))))))))))))......................................................
..................................................51........................................................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189786SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040008(GSM532893)
G727N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR189787DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343335RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189784SRR343334SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................TGTCTCCTCCAGCCACTGC........................................... 1911.001.00-------------1.00-------------------------------------
...............................................................................................................................................ACTGCCCTCTGCTGGAGAGAC........................... 211.000.00------------------------------------------------1.00--
....................................................................................................................................CTCCTCCAGCCACTGCGATT....................................... 201.000.00-------------1.00-------------------------------------
.........................................................................AGGTCAGGGCTCACTCTG.................................................................................................... 181.000.00---------------------------------------------1.00-----
.............................................CCCAGGTAGGATGATG.................................................................................................................................. 1650.200.20--------------------------------------------------0.20