ID: uc010ncj.16
GENE: PNPLA7(16)
chr9:140389549-140389798-


(2)
AGO2.ip 		(2)
B-CELL 		(8)
BRAIN 		(6)
BREAST 		(11)
CELL-LINE 		(7)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(3)
SKIN 		(3)
UTERUS

Sense strand
GCTAGGGGGCACCTTTGGCTTCTGGCATGTTCCAGTGGTTCTGACAGCGTCGCCCGCCAGCACTCACTGACTGCCTCCGCCTTGCGGTGTGGATGGGGTGTCATGTGTGGCTCTGGCAGGCACCGGAGGCTGTCAGGGACAGGTCCAGCTGGCTCGGCCCTCCCAAGCCCGCGGCCCCAGCAGCCGGCTCCTGTCCTCAGGTGGAGACACTGACCCACCAGGCCCGGGCGACCACGGTGCATGCCGTTCG
..........................................................................................((((((((.(((......((((((((..(((..((..((((....((((..((((.((....)).)))).)))).))))))..))))))).)))))))))))))))......................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577744(Rovira)
total RNA. (breast)		SRR189787SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189786SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577453(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR038859(GSM458542)
MM386. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR343335SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCA...................................................22114.0014.002.004.00-1.002.00--1.00-------1.00-------1.00------------------1.00----1.00--
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAT..................................................2317.0014.00-----2.004.00------------------------1.00------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAG..................................................2317.007.00-----2.00-1.00--1.00----------1.001.00-------1.00-------------------
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCA...................................................2116.006.00---2.001.00---------------------1.00-1.00---------1.00-----------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAGT.................................................2415.007.00-------------------1.00--------------1.001.001.00---------1.00---
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCAGT.................................................234.000.003.00------------------------1.00------------------------
...............................................................................................GGGTGTCATGTGTGGCTCTGGCAG...................................................................................................................................2412.002.00--2.00-----------------------------------------------
.....................................................................................................................................CAGGGACAGGTCCAGCTGGCTC...............................................................................................2212.002.00---------2.00----------------------------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTC....................................................2112.002.00----1.00-------------------1.00-------------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCT.....................................................2012.002.00----------1.00------------------1.00--------------------
..........................................................................................................GTGGCTCTGGCAGGCGT...............................................................................................................................171.000.00--------------1.00-----------------------------------
.................................................................................................GTGTCATGTGTGGCTCTGGCAGA..................................................................................................................................2311.001.00---------------------------1.00----------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCT...................................................2211.002.00------------------1.00-------------------------------
.....................................................................................................................................................................................................................CCCACCAGGCCCGGGA.....................161.000.00------------1.00-------------------------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCTT..................................................2311.002.00----------------1.00---------------------------------
.................................................................................................GTGTCATGTGTGGCTCTGGCAG...................................................................................................................................2211.001.00--------------1.00-----------------------------------
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCC...................................................211.000.00---1.00----------------------------------------------
..................................................................................................TGTCATGTGTGGCTCTGGCAGGCACCGGAGG.........................................................................................................................3111.001.00--1.00-----------------------------------------------
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCCGTT................................................241.000.00--------------------------------1.00-----------------
........................................................................................GTGGATGGGGTGTCAGAAA...............................................................................................................................................191.000.00-------------1.00------------------------------------
................................................................................................................................................................................CCAGCAGCCGGCTCCTGTCCTCA...................................................2311.001.00-------------------------------------1.00------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAGTTA...............................................2611.007.00-----------1.00--------------------------------------
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCAT..................................................2211.006.00-----------------------------------------1.00--------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCC......................................................1911.001.00-----------1.00--------------------------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAAT.................................................2411.0014.00---------------------------------------1.00----------
.........................................................................................................TGTGGCTCTGGCAGGCG................................................................................................................................171.000.00--------1.00-----------------------------------------
..............................................................................................................................................................................CCCCAGCAGCCGGCTCCTGTCCT.....................................................2311.001.00----------------------------------------1.00---------
..................................................................................................................................................AGCTGGCTCGGCCCTCT.......................................................................................171.000.00---------------------------------------------1.00----
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAGTCT...............................................2611.007.00----------------1.00---------------------------------
.....................................................................................................................................CAGGGACAGGTCCAGCTGGCTCT..............................................................................................2311.002.00---------------1.00----------------------------------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAGTTTT..............................................2711.007.00-----------------1.00--------------------------------
........................................................................................................................CACCGGAGGCTGTCAG..................................................................................................................1611.001.00--1.00-----------------------------------------------
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCAGCAT...............................................251.000.00-------------------------------------------1.00------
.................................................................................................................................................................................CAGCAGCCGGCTCCTGTCCTCAGA.................................................2411.007.00-------1.00------------------------------------------
......................................................................................................ATGTGTGGCTCTGGCAGGCAC...............................................................................................................................2111.001.00--------1.00-----------------------------------------
..................................................................................................................................................................................AGCAGCCGGCTCCTGTCCTCAA..................................................2211.006.00--------------------------------------------1.00-----
.........................................................................................................................................................................................................................CCAGGCCCGGGCGA...................1460.170.17------------------------------------------------0.17-
..................................................................CTGACTGCCTCCGC..........................................................................................................................................................................1480.120.12-------------------------------------------------0.12

Antisense strand
GCTAGGGGGCACCTTTGGCTTCTGGCATGTTCCAGTGGTTCTGACAGCGTCGCCCGCCAGCACTCACTGACTGCCTCCGCCTTGCGGTGTGGATGGGGTGTCATGTGTGGCTCTGGCAGGCACCGGAGGCTGTCAGGGACAGGTCCAGCTGGCTCGGCCCTCCCAAGCCCGCGGCCCCAGCAGCCGGCTCCTGTCCTCAGGTGGAGACACTGACCCACCAGGCCCGGGCGACCACGGTGCATGCCGTTCG
..........................................................................................((((((((.(((......((((((((..(((..((..((((....((((..((((.((....)).)))).)))).))))))..))))))).)))))))))))))))......................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577744(Rovira)
total RNA. (breast)		SRR189787SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189786SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577453(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR038859(GSM458542)
MM386. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR343335SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
...............................................................................................................................................................................................................CACTGACCCACCAGGCGTA........................ 191.000.00-------------1.00------------------------------------
..............................................................................................................................................................................CCCCAGCAGCCGGCTAGCC......................................................... 191.000.00------------1.00-------------------------------------
............................................................................................................................................................GCCCTCCCAAGCCCGCGAA........................................................................... 191.000.00---------------------------------1.00----------------
............................................................................................................................................................GCCCTCCCAAGCCCGCATC........................................................................... 191.000.00--------------------1.00-----------------------------