ID: uc010dtt.14
GENE: ANKRD24(14)
chr19:4215775-4216024+


(2)
AGO1.ip 		(3)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(9)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(4)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(2)
OTHER 		(1)
OTHER.ip 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
AAAAAAAAAAAGTGGCACGGGGAGTGGGTGGCAAAGGACATGGAAGGTGCTCACTAAATCCTTGTGGGCCAAATGCAGCCATCTGGTGCTCGTGGGAGACATACAGGTATGTGAACAGCCCAGTCCCCACTGGAGTCTTGGTGGGGACACACGGGGGCTGAGAGCAGAACCCCGAGCTGGACTCTGCTCCCTCCCCCCAGAACGAGCGGGAGAATACTAGCTATGACGTAACCACCCTGCAGGATGAGGA
........................................................................................................................................................(((((....(((((((..((......))..)))))))....)))))....................................................
.................................................................................................................................................146...................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577739(Rovira)
total RNA. (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR040035(GSM532920)
G001T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
......................................................................................................................................................ACGGGGGCTGAGAGCAGAACC...............................................................................21128.0028.0014.004.001.00--1.00-1.00-----1.002.00-1.00-----1.001.00------------------------------1.00----------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAACC...............................................................................22114.0014.005.00-1.003.00-1.001.00-----1.00------1.00-------1.00-------------------------------------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAAC................................................................................21114.0014.002.005.002.00----1.00----------1.00--1.00--1.00-------1.00--------------------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAAC................................................................................22110.0010.003.001.001.00-5.00------------------------------------------------------------
......................................................................................................................................................ACGGGGGCTGAGAGCAGAACCC..............................................................................22110.0010.004.00----2.001.00--------3.00-------------------------------------------------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGA..................................................................................1918.008.00---2.00-1.00-1.00---------------------1.001.00-----1.00----1.00-----------------------
......................................................................................................................................................ACGGGGGCTGAGAGCAGAAC................................................................................2018.008.003.00-1.00--------1.00--------------------------1.00----1.00--1.00------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGA..................................................................................2018.008.002.00-1.001.00------1.00--1.00-------1.00------------1.00------------------------------
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCCAGT.................................................218.000.00---------3.00-1.00-1.00-----------------1.00-------1.00---------------1.00---------
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCCAGA.................................................2117.007.001.00-3.00-------------1.00-----1.00---------------------------------1.00--------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAA.................................................................................2016.006.001.001.001.00-------1.00-1.00-------------------------------1.00--------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAA.................................................................................2115.005.002.00------------------1.00--------------------------------1.00----------1.00-
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAAA................................................................................2113.006.001.00-1.00--------------------------------------------1.00-----------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAAAAA..............................................................................2412.005.00---2.00-------------------------------------------------------------
......................................................................................................................................................ACGGGGGCTGAGAGCAGAACA...............................................................................2112.008.00------------1.00-----------------------------1.00----------------------
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCCAGAA................................................2212.002.00------1.00---------------------1.00------------------------------------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAACCC..............................................................................2312.002.00----------------1.00---------1.00--------------------------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAACC...............................................................................2311.001.00---1.00-------------------------------------------------------------
...................................................................................TGGTGCTCGTGGGAGACT.....................................................................................................................................................181.000.00---------------------------------------------------1.00-------------
.....................................................................................................................................................CACGGGGGCTGAGAGCAAA..................................................................................191.000.00-----------1.00-----------------------------------------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAACT...............................................................................2311.0010.00-------1.00---------------------------------------------------------
............................................................................................TGGGAGACATACAGGTATGTGAACA.....................................................................................................................................2511.001.00------------------------------------------------1.00----------------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAACA...............................................................................2211.0014.00-1.00---------------------------------------------------------------
...............................................................................................................................................GGGACACACGGGGGCATT.........................................................................................181.000.00---------------------------------------------1.00-------------------
......................................................................................................................................................ACGGGGGCTGAGAGCAGAAAAA..............................................................................221.000.00---------------------------------------------------------1.00-------
..................................................................................................................................................................AGCAGAACCCCGAGC.........................................................................1511.001.00------------------1.00----------------------------------------------
.......................................................................................................................................................CGGGGGCTGAGAGCAAAGC................................................................................191.000.00--------1.00--------------------------------------------------------
.....................................................................................................................................................CACGGGGGCTGAGAGCAGAACCAA.............................................................................2411.0014.00----------1.00------------------------------------------------------
.............................................................................................................................................................................................................................TATGACGTAACCACCCTGCAGGATGAGG.2811.001.00-------------------------------------------------1.00---------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAATAT..............................................................................2411.005.00------------------------------------------------------------1.00----
...................................................................................................................................................CACACGGGGGCTGAGAGCAGAAT................................................................................231.000.00------1.00----------------------------------------------------------
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCCAGATT...............................................2311.007.00----------------------------------------------------------1.00------
..................................................................................................................................................................AGCAGAACCCCGAGCAGTC.....................................................................1911.001.00-------------------------------------------------------------1.00---
......................................................................................................................................................ACGGGGGCTGAGAGCAGAAA................................................................................201.000.00-1.00---------------------------------------------------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGAACCC..............................................................................2411.001.001.00----------------------------------------------------------------
...........................................................................................................................................................................................TCCCTCCCCCCAGAAGCCC............................................191.000.00--------------------1.00--------------------------------------------
............................................................................................................................................................................................................AGCGGGAGAATACTAGCTATGACG......................2411.001.00-----------------------------------------------------1.00-----------
................ACGGGGAGTGGGTGGCACA.......................................................................................................................................................................................................................191.000.00----------------------------------------1.00------------------------
..................................................................................................................................................................AGCAGAACCCCGAGCAGT......................................................................1811.001.00-----------------------------------------------------------1.00-----
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCCAGAAGA..............................................2411.002.00--1.00--------------------------------------------------------------
....................................................................................................................................................ACACGGGGGCTGAGAGCAGGAC................................................................................221.000.00----1.00------------------------------------------------------------
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCCA...................................................1911.001.00--------------1.00--------------------------------------------------
....................................................................................................................................................................................ACTCTGCTCCCTCCCCCGAGT.................................................211.000.00--------------------------------------------------------------1.00--
...................................................................................................................................................................................GACTCTGCTCCCTCCCCCAG...................................................201.000.00-----------------1.00-----------------------------------------------
..............................................................................................................................................................................................................CGGGAGAATACTAGCC............................161.000.00-------------------------------------1.00---------------------------
..................................................................................................................................................................AGCAGAACCCCGAGCAG.......................................................................1711.001.00---------------------------------1.00-------------------------------
..................................................................................................................................................................AGCAGAACCCCGAG..........................................................................1440.250.25----------------------------------------------------------------0.25
....................................................................................................................................................ACACGGGGGCTGAG........................................................................................1480.120.12--------0.12--------------------------------------------------------

Antisense strand
AAAAAAAAAAAGTGGCACGGGGAGTGGGTGGCAAAGGACATGGAAGGTGCTCACTAAATCCTTGTGGGCCAAATGCAGCCATCTGGTGCTCGTGGGAGACATACAGGTATGTGAACAGCCCAGTCCCCACTGGAGTCTTGGTGGGGACACACGGGGGCTGAGAGCAGAACCCCGAGCTGGACTCTGCTCCCTCCCCCCAGAACGAGCGGGAGAATACTAGCTATGACGTAACCACCCTGCAGGATGAGGA
........................................................................................................................................................(((((....(((((((..((......))..)))))))....)))))....................................................
.................................................................................................................................................146...................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577739(Rovira)
total RNA. (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR040035(GSM532920)
G001T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
......................................................................................................................................................................................TCTGCTCCCTCCCCCCAA.................................................. 181.000.00-----------------------------------1.00-----------------------------
.........................................................................................................................................................................................................ACGAGCGGGAGAATAGTAA.............................. 191.000.00-----------------1.00-----------------------------------------------
..............................................................................CCATCTGGTGCTCGTGTG.......................................................................................................................................................... 181.000.00--------------------------------------------------1.00--------------
..........................................................................................................................................................................................CTCCCTCCCCCCAGAAGG.............................................. 181.000.00--------1.00--------------------------------------------------------
......................................................................................................................................................................................................................TACTAGCTATGACGTACAG................. 191.000.00-------------------------1.00---------------------------------------
......................................................................................................................................GTCTTGGTGGGGACACAG.................................................................................................. 181.000.00--------------------1.00--------------------------------------------
..........................................................................................................................................................................................CTCCCTCCCCCCAGAAGGAG............................................ 201.000.00--------1.00--------------------------------------------------------