ID: uc010cyj.9
GENE: COASY(9)
chr17:40717774-40717973+


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(12)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(4)
HELA 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCCACGTGGTGCTCAGCACCTTGTGGGAGCCGCATATCACCCAACGCCAGGTTGGTGCCCAGGGCAAGGCCGGGTTGTGGGGAAGGAGTCTCCAGTGGGTACTGCCTGACCCTGCCCTCTCTTCCTCCCAACATCCTGGCCTGTCTGAAGGTGGAGAAAGCCTGGGCCCTCTTGCAGAAGCGCATTCCCAAGACTCATCA
.............................................................((((.((((((((.(((.((((.((((........((((........))))........)))).)))).))).))))))))))))......................................................
............................................................61.......................................................................................150................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189786SRR038852(GSM458535)
QF1160MB. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189787SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR189785DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR038863(GSM458546)
MM603. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................AAGGCCGGGTTGTGGGGAAGGAT................................................................................................................23110.0010.00----1.00---2.00-2.00----1.00--------1.00------------------1.00--1.00-1.00------
.................................................................AAGGCCGGGTTGTGGGGAAGGA.................................................................................................................22110.0010.00--1.002.001.00-3.00------------1.00--1.00--1.00-----------------------------
..............................................................................................................................................................AGCCTGGGCCCTCTTGCAGAAGCGC.................2518.008.008.00------------------------------------------------------
................................................................CAAGGCCGGGTTGTGGGGAAGGA.................................................................................................................2317.007.00-1.00------------2.00---1.00-------1.00----------1.00-1.00---------------
.................................................................AAGGCCGGGTTGTGGGGAAGGAA................................................................................................................2316.0010.00-------3.00----3.00------------------------------------------
................................................................CAAGGCCGGGTTGTGGGGAAG...................................................................................................................2116.006.00--1.00-------1.00--3.00-----1.00-----------------------------------
.................................................................AAGGCCGGGTTGTGGGGAAGGATT...............................................................................................................2414.0010.00---------3.00-----------------------------------1.00---------
................................................................CAAGGCCGGGTTGTGGGGAAGGT.................................................................................................................2313.002.00--2.00-----------------------------1.00----------------------
.............................................................................................................................................................AAGCCTGGGCCCTCTTGCAGA......................2113.003.00-1.00---------------------------1.001.00------------------------
....................................................................................................ACTGCCTGACCCTGCCGGG.................................................................................193.000.00--------------------1.00--2.00-------------------------------
............................................................AGGGCAAGGCCGGGTTGTGGGGATA...................................................................................................................252.000.00----------------2.00--------------------------------------
................................................................CAAGGCCGGGTTGTGGGGAAGG..................................................................................................................2212.002.00---1.00----1.00----------------------------------------------
............................................................................................................................CTCCCAACATCCTGGCCTGTCT......................................................2212.002.00-----------------2.00-------------------------------------
.................................................................AAGGCCGGGTTGTGGGGAA....................................................................................................................1911.001.00----------------------------------1.00--------------------
................................................................CAAGGCCGGGTTGTGGGGAAT...................................................................................................................211.000.00---------------------------1.00---------------------------
.........................................................................................................................................................................TCTTGCAGAAGCGCATTCCC...........2011.001.00-----------1.00-------------------------------------------
..................................................................AGGCCGGGTTGTGGGGAAGGAT................................................................................................................221.000.00----------------------------------------1.00--------------
.................................................................AAGGCCGGGTTGTGGGGAAG...................................................................................................................2011.001.00----1.00--------------------------------------------------
.................................................................AAGGCCGGGTTGTGGGGAAGGAAA...............................................................................................................2411.0010.00----------------------1.00--------------------------------
.................................................................................................................................................................CTGGGCCCTCTTGCAGAAGCG..................2111.001.00--------------------------------------------------1.00----
...........................................................................................................................CCTCCCAACATCCTGGCCTGT........................................................2111.001.00----------------------------1.00--------------------------
................................................................CAAGGCCGGGTTGTGGGGATGGA.................................................................................................................231.000.00-1.00-----------------------------------------------------
............................................................................................................................CTCCCAACATCCTGGCCTGT........................................................2011.001.00---1.00---------------------------------------------------
...........................................................................................................................................................GAAAGCCTGGGCCCTCTTGCAGAT.....................241.000.00------------------------------------1.00------------------
................................................................CAAGGCCGGGTTGTGGGGAAGGATA...............................................................................................................2511.007.00----1.00--------------------------------------------------
................................................................................................................................CAACATCCTGGCCTGTCTGAAG..................................................2211.001.00-------------------------------1.00-----------------------
....................................TCACCCAACGCCAGGAGC..................................................................................................................................................181.000.00-----1.00-------------------------------------------------
...................................................................................................................................................................................GCGCATTCCCAAGACTCATCA2111.001.00-------------------------------------------------1.00-----
...............................................................................................................................................................................AGAAGCGCATTCCCAAGACTCAT..2311.001.00-----------------------------------------1.00-------------
................................................................CAAGGCCGGGTTGTGGGGAAGGTT................................................................................................................2411.002.00-1.00-----------------------------------------------------
.................ACCTTGTGGGAGCCGCATATA..................................................................................................................................................................211.000.00-----------1.00-------------------------------------------
........GTGCTCAGCACCTTGTGGGAGCCGCA......................................................................................................................................................................2611.001.00-----------1.00-------------------------------------------
.................................................................AAGGCCGGGTTGTGG........................................................................................................................1521.001.00---------------------1.00---------------------------------
.....................................................................................................CTGCCTGACCCTGCCGG..................................................................................171.000.00--------------------1.00----------------------------------
.................................................................AAGGCCGGGTTGTGGGGAAGGATAAA.............................................................................................................2611.0010.00------------------------1.00------------------------------
...........................................................................................................................................................GAAAGCCTGGGCCCTCTTGCAGAAGCGCATTC.............3211.001.00--------------------------------------1.00----------------
..................................................................AGGCCGGGTTGTGGGGAAGGAGTCTC............................................................................................................2611.001.00---------------1.00---------------------------------------
............................................................................................................................................................AAAGCCTGGGCCCTCTTGCAGAA.....................2311.001.00--------------------------------------------1.00----------
................................................................................................................................................................CCTGGGCCCTCTTGCAGAAGCGCAT...............2511.001.00---------------------------------------------------1.00---
.........................................................................GTTGTGGGGAAGGAGCTAC............................................................................................................191.000.00-----------------------------------------------------1.00-
...............................................................................................................................................................GCCTGGGCCCTCTTGCGGCT.....................201.000.00-----------------------------------1.00-------------------
................................................................CAAGGCCGGGTTGTGGGGACTGA.................................................................................................................231.000.00------------------1.00------------------------------------
..................................................GTTGGTGCCCAGGGCAAGGCCGGGTTGTGGGGAAGGAGTCTCCAGTGGGTACTGCCTGACCCTGCCCTCTCTTCCTCCCAACATCCTGGCCTGTCTGAAG..................................................10011.001.00-----------------------------------------------1.00-------
...............................................................................................................................CCAACATCCTGGCCTGTCTGAT...................................................221.000.00------------------------------------------1.00------------
...................................................................................................TACTGCCTGACCCTGCCGGG.................................................................................201.000.00----------------------------------------------------1.00--

Antisense strand
GCCACGTGGTGCTCAGCACCTTGTGGGAGCCGCATATCACCCAACGCCAGGTTGGTGCCCAGGGCAAGGCCGGGTTGTGGGGAAGGAGTCTCCAGTGGGTACTGCCTGACCCTGCCCTCTCTTCCTCCCAACATCCTGGCCTGTCTGAAGGTGGAGAAAGCCTGGGCCCTCTTGCAGAAGCGCATTCCCAAGACTCATCA
.............................................................((((.((((((((.(((.((((.((((........((((........))))........)))).)))).))).))))))))))))......................................................
............................................................61.......................................................................................150................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189786SRR038852(GSM458535)
QF1160MB. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189787SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR189785DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR038863(GSM458546)
MM603. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................CCTCCCAACATCCTGGCCTTGA....................................................... 221.000.00-----1.00-------------------------------------------------
..........................................................................................................................TCCTCCCAACATCCTGGCCT.......................................................... 2011.001.00---------------------1.00---------------------------------
..................................................................AGGCCGGGTTGTGGGGAATGA................................................................................................................. 211.000.00-----1.00-------------------------------------------------
.................................................................................................................................AACATCCTGGCCTGTTGTG.................................................... 191.000.00---------------------------------1.00---------------------
....................................TCACCCAACGCCAGGTGCAG................................................................................................................................................ 201.000.00-----1.00-------------------------------------------------
.................................................................................................................GCCCTCTCTTCCTCCCA...................................................................... 1770.140.14------------------------------------------------------0.14