ID: uc009zpl.1
GENE: STAC3(1)
chr12:57637959-57638147-


(1)
AGO1.ip OTHER.mut 		(5)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(4)
LIVER 		(1)
OTHER 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAGGAGAGAAGATCACAGTCATTGATGACTCCAATGAAGAATGGTGGCGGGTGAGAGAAATGGCTAGGGCTAGGGTGGAGTGTGGGTTGAGTCCAGAACCCGACATTGAGAGATGGACTCTCCCTACTATCTTCCCTAGGGGAAAATCGGGGAGAAGGTCGGATTTTTCCCTCCAAACTTCATCATTCG
.....................................................................((((((.(((..(((((..(((((((.....((....)).....)))))))..)))))..))).))))))..................................................
................................................................65........................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189785SRR343335SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040028(GSM532913)
G026N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR189784SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM956925Ago2(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.....................................................................CTAGGGTGGAGTGTGGGTTGAGT.................................................................................................23118.0018.00-8.008.00---1.00------------------------------1.00-------------------------------
......................................................................TAGGGTGGAGTGTGGGTTGAGT.................................................................................................22115.0015.00----3.001.00--1.00-----1.002.002.00-----1.00---------------------1.00--1.00--1.00--1.00---------------
......................................................................................................................TCTCCCTACTATCTTCCCTAGT.................................................22112.001.00-------3.00---2.00-1.00-------2.00--1.00---------1.00-1.00------------1.00-------------------
......................................................................TAGGGTGGAGTGTGGGTTGAGTC................................................................................................23111.0011.00-6.00---1.00----3.00----------------------------------1.00-----------------------
.................................ATGAAGAATGGTGGCGG...........................................................................................................................................1726.006.00----0.50-----------------0.500.500.50-------------------------------0.500.50-0.500.50-0.500.50-0.50-0.50-
......................................................................TAGGGTGGAGTGTGGGTTGAGA.................................................................................................225.000.00---4.00-----------------------------------------------1.00-----------------
....................................................................GCTAGGGTGGAGTGTGGGTTGAGTCCAG.............................................................................................2814.004.004.00--------------------------------------------------------------------
.....................................................................CTAGGGTGGAGTGTGGGTTGAGTCCAG.............................................................................................2713.003.002.00-----------------------------------------------1.00--------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCTATT.................................................2813.001.003.00--------------------------------------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCTACT.................................................2812.001.002.00--------------------------------------------------------------------
................................................................TAGGGCTAGGGTGGAGTGTGGGTTA....................................................................................................252.000.00-------------------2.00-------------------------------------------------
.......................GATGACTCCAATGAAGAATGGTGGCGG...........................................................................................................................................2712.002.00-----1.00--1.00------------------------------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCTAT..................................................2712.001.002.00--------------------------------------------------------------------
......................................................................TAGGGTGGAGTGTGGGTTGAGTAT...............................................................................................2412.0015.00--------------------2.00------------------------------------------------
......................................................................................................................TCTCCCTACTATCTTCCCTAGTT................................................2312.001.00---------2.00-----------------------------------------------------------
...............................CAATGAAGAATGGTGGCGG...........................................................................................................................................1912.002.00---------1.00-------------1.00---------------------------------------------
.....................................................................CTAGGGTGGAGTGTGGGTTGA...................................................................................................2112.002.00--------1.00------------------------1.00-----------------------------------
...................................GAAGAATGGTGGCGG...........................................................................................................................................1521.501.50----------------------0.50-----------------------------------0.50-----0.50----
......................................................................TAGGGTGGAGTGTGGGTTGAGTT................................................................................................2311.0015.00---------------------------------------1.00-----------------------------
................................................................TAGGGCTAGGGTGGAGTGTGGGT......................................................................................................2311.001.00------------1.00--------------------------------------------------------
......................................................................................................................TCTCCCTACTATCTTCCCTATTT................................................231.000.00-------------------------1.00-------------------------------------------
.............CACAGTCATTGATGAAA...............................................................................................................................................................171.000.00-----------------------------------1.00---------------------------------
.....................................................................................................................CTCTCCCTACTATCTTCCCTAG..................................................2211.001.001.00--------------------------------------------------------------------
.......................................................................AGGGTGGAGTGTGGGTTGAGTCAA..............................................................................................241.000.00------------------------------------------1.00--------------------------
..................................TGAAGAATGGTGGCGG...........................................................................................................................................1621.001.00-----0.50------------------------------------------------------------0.50--
.....................................................................................................................................................GGGAGAAGGTCGGATTTTT.....................1911.001.00------------1.00--------------------------------------------------------
.......................................................................AGGGTGGAGTGTGGGTTGAGA.................................................................................................211.000.00-------------1.00-------------------------------------------------------
....................................................................................................................................................GGGGAGAAGGTCGGATGCGG.....................201.000.00------------------1.00--------------------------------------------------
......................................................................TAGGGTGGAGTGTGGGGGAG...................................................................................................201.000.00----------------------------------------1.00----------------------------
.....................................................................CTAGGGTGGAGTGTGGGTTTAGT.................................................................................................231.000.00--1.00------------------------------------------------------------------
...................................................................................................CCGACATTGAGAGATGGA........................................................................1811.001.00----------------------------1.00----------------------------------------
............................................................................................................................................GGAAAATCGGGGAGATGGT..............................191.000.00-------------------------------------------1.00-------------------------
......................TGATGACTCCAATGAAGAATGGTGGCGG...........................................................................................................................................2811.001.00----------------------------------------------1.00----------------------
...........................................................................TGGAGTGTGGGTTGAGTCCAGA............................................................................................2211.001.00--------------------------------1.00------------------------------------
......................................................................TAGGGTGGAGTGTGGGTTGAGAA................................................................................................231.000.00---------------------------1.00-----------------------------------------
......................................................................TAGGGTGGAGTGTGGGTTGAGTAAA..............................................................................................2511.0015.00------1.00--------------------------------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCTA...................................................2611.001.00-----------------1.00---------------------------------------------------
.............CACAGTCATTGATGAAGTT.............................................................................................................................................................191.000.00-------------------------------1.00-------------------------------------
......................................................................................................................................................................TTCCCTCCAAACTTCATACTG..211.000.00-----------------1.00---------------------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCC.....................................................2411.001.001.00--------------------------------------------------------------------
.....................................................................CTAGGGTGGAGTGTGGGTTGAGTC................................................................................................2411.001.00-1.00-------------------------------------------------------------------
.....................................................................CTAGGGTGGAGTGTGGGTTGAG..................................................................................................2211.001.00--------------------------1.00------------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCT....................................................2511.001.001.00--------------------------------------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCTAAA.................................................2811.001.001.00--------------------------------------------------------------------
....................................................................GCTAGGGTGGAGTGTGGGTTGAGT.................................................................................................2411.001.00------1.00--------------------------------------------------------------
......................................................................TAGGGTGGAGTGTGGGTTGAGTCA...............................................................................................2411.0011.00-----------------------------------------1.00---------------------------
.....................................................................................................................................................................TTTCCCTCCAAACTTAACG.....191.000.00------------------------------1.00--------------------------------------
................................................................................................................ATGGACTCTCCCTACTATCTTCCCCATT.................................................2811.001.00-----------------------------1.00---------------------------------------
.............................................................................GAGTGTGGGTTGAGTCCAGAAC..........................................................................................2211.001.00-1.00-------------------------------------------------------------------
......................................................................................................................TCTCCCTACTATCTTCCCTAG..................................................2111.001.00----------------------------------------------------1.00----------------
......................................................................TAGGGTGGAGTGTGGGTTGAGTCAT..............................................................................................2511.0011.00------------------------------------------------------1.00--------------
................................AATGAAGAATGGTGGCG............................................................................................................................................1720.500.50-------------------------------------------------------------0.50-------
.................................ATGAAGAATGGTGGCG............................................................................................................................................1630.330.33--------------------------------------------------------------------0.33

Antisense strand
CAGGAGAGAAGATCACAGTCATTGATGACTCCAATGAAGAATGGTGGCGGGTGAGAGAAATGGCTAGGGCTAGGGTGGAGTGTGGGTTGAGTCCAGAACCCGACATTGAGAGATGGACTCTCCCTACTATCTTCCCTAGGGGAAAATCGGGGAGAAGGTCGGATTTTTCCCTCCAAACTTCATCATTCG
.....................................................................((((((.(((..(((((..(((((((.....((....)).....)))))))..)))))..))).))))))..................................................
................................................................65........................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189785SRR343335SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040028(GSM532913)
G026N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR189784SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM956925Ago2(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
......................................................................................TTGAGTCCAGAACCCGC...................................................................................... 171.000.00--------------1.00------------------------------------------------------
........................................................................................GAGTCCAGAACCCGACTG................................................................................... 181.000.00--------------------------------------1.00------------------------------
............................................................................................................................................................GGTCGGATTTTTCCCTCCAAACTTCATCATTCG 3311.001.00------------------1.00--------------------------------------------------
......................................................................................................................................................................TTCCCTCCAAACTTCA....... 16100.700.70-------------------------------------------------------0.70-------------