ID: uc009ybz.1
GENE: PHRF1(7)
chr11:606242-606491+


(2)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(4)
BREAST
(18)
CELL-LINE
(3)
CERVIX
(2)
HEART
(1)
LIVER
(1)
OTHER
(17)
SKIN
(1)
UTERUS

Sense strand
GGGGCTCCCTCCCTCCCTCCCTCTGGGAGGCCCCGGTGAGCACCTCTTAGAACAGCAGCCGGAGCCAGGGCTGTGGGGGAGGCGCAGGCCCGGCCCAGCCCCACTCTCCCTGGCTCCCGCCTGCTGCGGGGCTCTGCCTGGGTGCGGGCCCTCAGGCCGTGGGAGGCAGTGACGGCAGGGCCTTGGGTCTGTGCCCACAGGAGGCGCCTCCCTGCCGCGGTGCCAGAGCCAGACTTGGAGGAGGAGCCAG
.....................................................................................................................................(((..((((..(((((((..(((((.((..............)).))))).)))))))..)))))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR037937(GSM510475)
293cand2. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR029128(GSM416757)
H520. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
................................................................................................................................................................................AGGGCCTTGGGTCTGTGCCCAAT...................................................236.000.006.00-----------------------------------------------------
...............................................................................................................................................................................CAGGGCCTTGGGTCTGTGCCCACA...................................................2414.004.00---------------------------------------1.00-1.00-1.00----1.00-----
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGT..........................................................................................2314.004.00-------1.00----1.00---------------------1.00---1.00---------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTG.........................................................................................2313.003.003.00-----------------------------------------------------
........................................................................................................................................CCTGGGTGCGGGCCCTCAGGCCGTT.........................................................................................253.000.003.00-----------------------------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTGC........................................................................................2413.003.00-3.00----------------------------------------------------
..................................................................................................................................................................................................................CCTGCCGCGGTGCCA.........................1513.003.00------------------1.00--------1.00-------------------1.00------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGT..........................................................................................2212.002.00-1.00--1.00-------------------------------------------------
...................................................................................................................................................................................................................CTGCCGCGGTGCCA.........................1422.002.00--------------1.00-------------1.00-------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGAAC........................................................................................2512.001.002.00-----------------------------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTGTA.......................................................................................2512.003.00------------------------1.00---------------------1.00-------
........................................................................................................................................CCTGGGTGCGGGCCCTCAGGCCG...........................................................................................2312.002.00------2.00-----------------------------------------------
...............................................................................................................................................................................CAGGGCCTTGGGTCTGTGC........................................................1912.002.00--2.00---------------------------------------------------
...............................................................................................................................................................................CAGGGCCTTGGGTCTGTGCCCAC....................................................2312.002.00--------2.00---------------------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTGTAC......................................................................................2611.003.00-1.00----------------------------------------------------
..............................................................................................................................................................................GCAGGGCCTTGGGTCTGTG.........................................................1911.001.00------------------------------------------1.00-----------
..............................................................................................CCAGCCCCACTCTCCCTCGGT.......................................................................................................................................211.000.00-------------------------1.00----------------------------
...............................................................................................................................................................................CAGGGCCTTGGGTCTGTGCCCA.....................................................2211.001.001.00-----------------------------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTC.........................................................................................2311.002.00-1.00----------------------------------------------------
........................................................................................................................................CCTGGGTGCGGGCCCTCAGGCCGTTTTT......................................................................................281.000.00---1.00--------------------------------------------------
..........................................................................................................................................................................GACGGCAGGGCCTTGTGTA.............................................................191.000.00--------------------------------------------1.00---------
..............................................................AGCCAGGGCTGTGGGGGACA........................................................................................................................................................................201.000.00-------------------------------------1.00----------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGTTAT.......................................................................................2611.004.00----------1.00-------------------------------------------
............................................................................................................................................................................................................CGCCTCCCTGCCGCGGTGCCAGAGCCA...................2711.001.00------------------------------------1.00-----------------
.......................................................................................................................................GCCTGGGTGCGGGCCCTCAG...............................................................................................2011.001.00---------1.00--------------------------------------------
...............................................................................................................GGCTCCCGCCTGCTGGGG.........................................................................................................................181.000.00-------------------1.00----------------------------------
............................................................................................................................................................CCGTGGGAGGCAGTGACGGCAGGGCCTTGGGTC.............................................................3311.001.00---------------1.00--------------------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCC............................................................................................2111.001.00-----------------------------------1.00------------------
........................................................................................................................................CCTGGGTGCGGGCCCTCAGGC.............................................................................................2111.001.00----------------------------------------1.00-------------
......................................................................................................................................TGCCTGGGTGCGGGCCCCCAG...............................................................................................211.000.00----1.00-------------------------------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGTG.........................................................................................2411.001.00---------------------1.00--------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTGTATT.....................................................................................2711.003.00-------------------------------1.00----------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGTAG........................................................................................2511.004.00-----1.00------------------------------------------------
.........................................................................................................................................................................................................AGGCGCCTCCCTGCCGCGG..............................1911.001.00-----------------1.00------------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTCT........................................................................................2411.002.00-1.00----------------------------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCAA...........................................................................................211.000.00---------------------------------------------1.00--------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGACGT..........................................................................................231.000.00-------1.00----------------------------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGA..........................................................................................2311.001.00-----------------------------1.00------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGTGA........................................................................................2511.001.00-----------------------1.00------------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCG...........................................................................................2211.001.001.00-----------------------------------------------------
.....................................................................................................................................................................GCAGTGACGGCAGGGCCTTGGGTCTGT..........................................................2711.001.00----------------------1.00-------------------------------
..........................................................................................................................................TGGGTGCGGGCCCTCAGGCCGTGA........................................................................................2411.003.00---1.00--------------------------------------------------
.........................................................................................................................................CTGGGTGCGGGCCCTCAGGCCGTTT........................................................................................2511.004.00--------------------1.00---------------------------------
........................................................................................................................................CCTGGGTGCGGGCCCTCAG...............................................................................................1911.001.00---------1.00--------------------------------------------
........................................................................................................................................CCTGGGTGCGGGCCCTCAGGCC............................................................................................2211.001.00-----------1.00------------------------------------------
........................................................................................................................................CCTGGGTGCGGGCCCTCAGGCCGTAGT.......................................................................................271.000.001.00-----------------------------------------------------
...............................................................................................................................................................................CAGGGCCTTGGGTCTGTGCC.......................................................2011.001.00---1.00--------------------------------------------------
.....................TCTGGGAGGCCCCGGTGTG..................................................................................................................................................................................................................191.000.00--------------------------------1.00---------------------
....................................................CAGCAGCCGGAGCCAGG.....................................................................................................................................................................................1730.330.33---------------------------------------------------0.33--
....................................................................................................................................................................................................................TGCCGCGGTGCCA.........................1340.250.25----------------------------------------------------0.25-
..........................................................CCGGAGCCAGGGCTGTG...............................................................................................................................................................................1780.120.12-----------------------------------------------------0.12
................................................................................................................................................................GGGAGGCAGTGACGG...........................................................................1580.120.12-----0.12------------------------------------------------

Antisense strand
GGGGCTCCCTCCCTCCCTCCCTCTGGGAGGCCCCGGTGAGCACCTCTTAGAACAGCAGCCGGAGCCAGGGCTGTGGGGGAGGCGCAGGCCCGGCCCAGCCCCACTCTCCCTGGCTCCCGCCTGCTGCGGGGCTCTGCCTGGGTGCGGGCCCTCAGGCCGTGGGAGGCAGTGACGGCAGGGCCTTGGGTCTGTGCCCACAGGAGGCGCCTCCCTGCCGCGGTGCCAGAGCCAGACTTGGAGGAGGAGCCAG
.....................................................................................................................................(((..((((..(((((((..(((((.((..............)).))))).)))))))..)))))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR037937(GSM510475)
293cand2. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR029128(GSM416757)
H520. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.......................................................................................GCCCGGCCCAGCCCCAGGGA............................................................................................................................................... 201.000.00------------------------------1.00-----------------------
............................................................................................................................................................................................................................TGCCAGAGCCAGACTTGA............ 181.000.00--------------------------1.00---------------------------
..............................................................................................................................................................................................................................CCAGAGCCAGACTTGGCAC......... 191.000.00---------------------------------1.00--------------------
................................................................................................................................................................................................................TCCCTGCCGCGGTGCACA........................ 181.000.00-------------1.00----------------------------------------
......................................................................................GGCCCGGCCCAGCCC..................................................................................................................................................... 1501.001.00----------------1.00-------------------------------------
..............................................................................................................................................................................................................................CCAGAGCCAGACTTGGC........... 171.000.00-----1.00------------------------------------------------
...................................................................................................................................CTCTGCCTGGGTGCGAGT..................................................................................................... 181.000.00--1.00---------------------------------------------------
.................................................................................GCGCAGGCCCGGCCCA......................................................................................................................................................... 1621.001.00-------------------------------------------------1.00----
.............................................................................................................................GCGGGGCTCTGCCTGGTCG.......................................................................................................... 191.000.00----1.00-------------------------------------------------
........................................................................................................................CTGCTGCGGGGCTCTGC................................................................................................................. 1720.500.50--------------------------------------------------0.50---