ID: uc009whm.3
GENE: PHGDH(3)
chr1:120267043-120267457+


(2)
AGO2.ip 		(1)
AGO3.ip 		(10)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(29)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(9)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTCCCTGCAGTTTCCATCTGAGCTCTCTGGTATTCACTGATATTCACTGGTAGGTGAAAGGAGGCAGTGGGGGGAAAGGAGAAACAGGGATAGCTTACACAGCAGTAGGGTCTCAGCCTAGAAGGGGCCCCCAGGCTGGCAGCCGGGTTCTCCCAGAACATCTAGGCTGAGTGTCTCTCCCCCTGGAGAAGTACAGAAGCCTGGCACCCTGGTTTCACTTCAGCTATTACCTTCAGGGATTTTTTTTTTTTTTTTTGAGTAAGGGAAAAGATCTCAATGTGGCTTTCTGATTAATTACCTCACTTTTTTTCTGGAGGTGGAAGGAAAGGATTGGGAGCCAGCAATACTTTCCCTCCTTTTCCAGGACCAGCTTTGTTTAAAGGAATCGGTGAAATGCTGTGGTTTAAAAGAAGC
.....................................................................................................................................................................................................................................................................................................................(((((((((.(((.((((((.((((........)))).)))))).))).)))))))))................................................
.................................................................................................................................................................................................................................................................................................................306..............................................................371..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189784TAX577589(Rovira)
total RNA. (breast)		SRR189782SRR038855(GSM458538)
D10. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577590(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATT..................................................................................23144.0044.00--2.009.003.002.00-2.004.001.001.00-2.001.001.00-------2.00--2.001.002.00--1.00----------1.00-----1.00--------1.00-1.00-1.00--1.00---1.00------1.00---
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGAT...................................................................................22120.0020.00----2.001.003.001.00-1.00-1.00------1.00--1.00------1.00-1.001.00-1.00-1.00----------1.00--------------1.00------1.00---1.00-----
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAGGAT...................................................................................2317.007.00--1.00--1.00-------1.001.00---------------------1.00------1.00-----------------------------1.00----
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGAA...................................................................................2214.004.00-------2.00-1.00--------------1.00-----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTCCAGTT................................................2214.001.00--------------------2.00--------2.00------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGA....................................................................................2114.004.00---------1.00-1.00----------------1.00---------------------------------1.00---------------
....................................................................................................................................................................................................................................................................................................................TTTCTGGAGGTGGAAGGAAAGGAT...................................................................................2414.004.001.00-1.00----------------------------1.00--------------------1.00-------------------------
..........................................................................................................................................................................................................................................................................................................................................................................CAGGACCAGCTTTGTTTAAAGGAA.............................2413.003.00--3.00---------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGG.....................................................................................2013.003.00------1.00---------1.00--------------------------------1.00----------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGATT.......................................................................................192.000.00-------------------2.00----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TGGAGGTGGAAGGAAAGGATTGA................................................................................2312.001.00--2.00---------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TTTCTGGAGGTGGAAGGAAAGGATT..................................................................................2512.002.00------------1.001.00----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTCCAGTTT...............................................2312.001.00----------1.00------------------------------------------1.00------------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTCCAGT.................................................2112.001.00---------------------------------------------1.00-----------------------1.00--------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATTT.................................................................................2412.0044.00-----------------2.00------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATA..................................................................................2312.0020.00------1.00-------------------------------1.00---------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAATCGGTGAAATGCT................2112.002.00----2.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAGGAA...................................................................................232.000.00-----1.00---------1.00--------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTTTCGCC..........................................................................................................................................................262.000.001.001.00----------------------------------------------------------------------------
................ATCTGAGCTCTCTGGTATTCAC.........................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-----------------------2.00------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAGGATT..................................................................................2412.002.00---------------1.00--------1.00-----------------------------------------------------
......................................................................................................................................................................................................................................................................................................ATTACCTCACTTTTTTTCTGGAGGTGG..............................................................................................2711.001.00-1.00----------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TGGAGGTGGAAGGAAAGGATTG.................................................................................2211.001.00----------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTTCAG...........................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTCCAGTCT...............................................2311.001.00------------------------------------------------------1.00-----------------------
.................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGTAGGCG.....................................................................................................................................................251.000.001.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTGAGTAGT.......................................................................................................................................................251.000.001.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTGCA............................................................................................................................................................261.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTCGTC.............................................................................................................................................................231.000.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TTTCTGGAGGTGGAAGGAAAGGATTGGG...............................................................................2811.001.001.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAA.......................................................................................1811.001.00-------------------------------------------------------1.00----------------------
...................................................................................................................................................................................................................................................................................................................TTTTCTGGAGGTGGAAGGAAAGGATT..................................................................................2611.001.00---------------------1.00--------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................ATACTTTCCCTCCTTTTCCAGT.................................................221.000.00---------------------------------------1.00--------------------------------------
........................................................................................................................................................................................................................................TTCAGGGATTTTTTTTTTTCCC.................................................................................................................................................................221.000.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTCTAC.............................................................................................................................................................231.000.001.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................TTTTCTGGAGGTGGAAGGA.........................................................................................1911.001.00--1.00---------------------------------------------------------------------------
...............................................................................................................................................................CATCTAGGCTGAGTGTC...............................................................................................................................................................................................................................................1711.001.00------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................................................CAGGGATTTTTTTTTTTTTTCTC..............................................................................................................................................................231.000.00-1.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTCGA............................................................................................................................................................261.000.00-1.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TCCCTCCTTTTCCAGGACCAGCTGTTT......................................271.000.001.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTGCA.............................................................................................................................................................251.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTCGC..............................................................................................................................................................221.000.00-1.00----------------------------------------------------------------------------
........................................................................................................................................................................................................................................TTCAGGGATTTTTTTTTTTTTCT................................................................................................................................................................231.000.001.00-----------------------------------------------------------------------------
.................................................................................................................................................................TCTAGGCTGAGTGTCTCTCCCCCCGGA...................................................................................................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTCGAG............................................................................................................................................................241.000.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTCGTC..............................................................................................................................................................221.000.001.00-----------------------------------------------------------------------------
........................................................................................................................................................................................................................................TTCAGGGATTTTTTTTTTTTTTCTT..............................................................................................................................................................251.000.001.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................ACCTTCAGGGATTTTTTTTTTTTTTTTTGAG...........................................................................................................................................................3111.001.00-1.00----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATTG.................................................................................2411.001.00-----1.00------------------------------------------------------------------------
........................................................................................................................................................................................................................................TTCAGGGATTTTTTTTTTTTTTTACT.............................................................................................................................................................261.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTTTCTG...........................................................................................................................................................251.000.00-1.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................ACTTTTTTTCTGGAGGTGGAAGG..........................................................................................2311.001.00-1.00----------------------------------------------------------------------------
........................................................................GGGAAAGGAGAAACAGGGATAGCTTA.............................................................................................................................................................................................................................................................................................................................2611.001.00------------------------------------------------1.00-----------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTCGA.............................................................................................................................................................251.000.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTATTT............................................................................................................................................................241.000.001.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAGG.....................................................................................2111.001.00----------------------------------------------------------------------1.00-------
..................................................................................................................................................................................................................................................................................................................TTTTTCTGGAGGTGGAAGG..........................................................................................1911.001.001.00-----------------------------------------------------------------------------
................................................TGGTAGGTGAAAGGAGGCAGTGGGG......................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------------1.00-------------------------------------------
.......................................................................................GGGATAGCTTACACAGCAGTAG..................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------1.00------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTCTTT...........................................................................................................................................................271.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTTTCGTC..........................................................................................................................................................261.000.00-1.00----------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................TTTTTCTGGAGGTGGAAGGAAAGG.....................................................................................2411.001.001.00-----------------------------------------------------------------------------
................................................................................................................................................................................................TACAGAAGCCTGGCACCCTG...........................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------1.00--
..........................................................................................................................................................................................................................................CAGGGATTTTTTTTTTTTTTTTCG.............................................................................................................................................................241.000.00-----------------------------------------------------------1.00------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTCCAG..................................................2011.001.00----------------------------------------1.00-------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTCCC..............................................................................................................................................................221.000.00-1.00----------------------------------------------------------------------------
..............................................................................................................................................................................................AGTACAGAAGCCTGGCACCCTGGCTTG......................................................................................................................................................................................................271.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTTTGGCTT.........................................................................................................................................................271.000.001.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTTTTTC..........................................................................................................................................................281.000.00-1.00----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TTTCTGGAGGTGGAAGGAAAGG.....................................................................................2211.001.00---1.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTTTGAGT..........................................................................................................................................................2611.001.00-1.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTCCATTT................................................221.000.00--------------------------------1.00---------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAGGATTAA................................................................................2611.002.00--------------------------------------------------1.00---------------------------
.............................................................................................................................................................AACATCTAGGCTGAGTGTCTCTCCCCCCGG....................................................................................................................................................................................................................................301.000.001.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTGAGTACGGT.....................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................TTTTTCTGGAGGTGGAAGGA.........................................................................................2011.001.00--1.00---------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATTA.................................................................................2411.0044.00----1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAAAGGAATCGGTGAAATGCTGTG.............2911.001.00----------------------------------------------------------------1.00-------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATTTT................................................................................2511.0044.00-------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTTTTC...........................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTCGGT............................................................................................................................................................241.000.001.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................TTTTCTGGAGGTGGAAGGAAAGGATTGGGAG.............................................................................3111.001.001.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTGATCGC........................................................................................................................................................241.000.001.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAG......................................................................................2011.001.00--------------------------1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................................................................TTACCTCACTTTTTTTTTG.....................................................................................................191.000.00-------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGAAG..................................................................................2311.004.00-----------1.00------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTCC..............................................................................................................................................................241.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGGATTTTTTTTTTTTTTTTGAGT...........................................................................................................................................................251.000.00-1.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TACTTTCCCTCCTTTTTCAG..................................................201.000.00------------------------------------------1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................ACTTTCCCTCCTTTTTTG...................................................181.000.00---------------------------------------------------------1.00--------------------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAGGATC..................................................................................2311.0020.00------1.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................................TCAGGGATTTTTTTTTTTTTTTTTCT............................................................................................................................................................261.000.001.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................TTTTCTGGAGGTGGAAGGAAAGG.....................................................................................2311.001.00-----------------------------------------------------------------1.00------------
.....................................................................................................................................................................................................................................................................................................................TTCTGGAGGTGGAAGGAAAGGATAA.................................................................................2511.007.00-----1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTGGAGGTGGAAGGAAAGGATTG.................................................................................2311.001.00------------------------------------------------------------------1.00-----------
......................................................................................................................................................................................................................................................................................................................TCTGGAGGTGGAAGGAAAG......................................................................................1911.001.00----------------1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCTGTGGTTTCTTA.....201.000.00--------------------------------------------1.00---------------------------------
..........................................................................................................................AAGGGGCCCCCAGGCTGGCAGCCGGGTTCCCCC....................................................................................................................................................................................................................................................................331.000.00-1.00----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TTTCTGGAGGTGGAAGG..........................................................................................1730.670.670.67-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TTTCTGGAGGTGGAAGGA.........................................................................................1820.500.500.50-----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGTAAGGG.....................................................................................................................................................2530.330.33-0.33----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................TTTTTTTTTTTTTGAGTAAGGG.....................................................................................................................................................2250.200.20-0.20----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................TTTTTTTTTTTTGAGTAAGGG.....................................................................................................................................................2150.200.20-0.20----------------------------------------------------------------------------

Antisense strand
CCTCCCTGCAGTTTCCATCTGAGCTCTCTGGTATTCACTGATATTCACTGGTAGGTGAAAGGAGGCAGTGGGGGGAAAGGAGAAACAGGGATAGCTTACACAGCAGTAGGGTCTCAGCCTAGAAGGGGCCCCCAGGCTGGCAGCCGGGTTCTCCCAGAACATCTAGGCTGAGTGTCTCTCCCCCTGGAGAAGTACAGAAGCCTGGCACCCTGGTTTCACTTCAGCTATTACCTTCAGGGATTTTTTTTTTTTTTTTTGAGTAAGGGAAAAGATCTCAATGTGGCTTTCTGATTAATTACCTCACTTTTTTTCTGGAGGTGGAAGGAAAGGATTGGGAGCCAGCAATACTTTCCCTCCTTTTCCAGGACCAGCTTTGTTTAAAGGAATCGGTGAAATGCTGTGGTTTAAAAGAAGC
.....................................................................................................................................................................................................................................................................................................................(((((((((.(((.((((((.((((........)))).)))))).))).)))))))))................................................
.................................................................................................................................................................................................................................................................................................................306..............................................................371..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189784TAX577589(Rovira)
total RNA. (breast)		SRR189782SRR038855(GSM458538)
D10. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577590(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
............................................................................................................................................................................................................................................................................................................................................TGGGAGCCAGCAATACTTGAG.............................................................. 211.000.001.00-----------------------------------------------------------------------------
..........................................................................GAAAGGAGAAACAGGGCC................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------------------------1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................................................CCAGGACCAGCTTTGT...................................... 1640.250.25----------------------------------------------------------------------------0.25-
...............................................................................................................................................................................CTCTCCCCCTGGAGA................................................................................................................................................................................................................................. 1590.110.11-----------------------------------------------------------------------------0.11