ID: uc004dmz.1
GENE: SYP(5)
chrX:49048171-49048420-


(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(10)
BRAIN 		(5)
BREAST 		(5)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(10)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAAATTCTTCTAACACGCCCACCCCGCCAGAGGTGATTTTTCTGCACATCGACGTTCTCGCACTGGGACTCAGAGAGTCTGGGTTTCAGAAACCCCCACCTTGCGGAGCCTACGGATTCATTCCCCGCATGCTCATTCCTGCACGCAGGGCCGCCAAGGCAATGGGCGGGGTACCACAGCCGAGCCTTGTCTCCCTGCAGGTGTTCGGCTTCCTGAACCTGGTGCTCTGGGTCGGCAACCTGTGGTTCGT
................................................................................................................................................((((((....((((((....(((.((...))...)))..))))))...))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR189786SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189787SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGT.................................................22142.001.0042.00-----------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGT.................................................21118.005.00-4.003.00--1.001.00----1.00--1.00--1.00-------1.001.00-1.00-----1.00---1.00-----1.00---
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGA.................................................2119.005.00--1.007.001.00-------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAG..................................................2015.005.00-4.00-----------1.00----------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGTAA...............................................2413.001.003.00-----------------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGTT................................................2312.001.002.00-----------------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGTA................................................2312.001.002.00-----------------------------------------------
......................................................................................................................................................................................................................GAACCTGGTGCTCTGGGTCGGCA.............2312.002.00----2.00-------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAAT.......................................................................................2212.002.001.00------1.00----------------------------------------
.....................................................................................................................................................................................................................TGAACCTGGTGCTCTGGGTCGGCA.............2412.002.00-----1.00-------------------------------1.00----------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGTAA...............................................2312.005.00----------------------1.00-------------1.00-----------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGC....................................................1912.002.002.00-----------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCATT.................................................212.000.00--1.00--1.00------------------------------------------
.................................................................................................................................................................................................................................TCTGGGTCGGCAACCTGTGGTT...2211.001.00--1.00---------------------------------------------
.............CACGCCCACCCCGCCCC............................................................................................................................................................................................................................171.000.00--------1.00---------------------------------------
...........................................................................................................................................................................................................................TGGTGCTCTGGGTCGGCAACCTG........2311.001.00--------------------1.00---------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAG..................................................2111.001.00----1.00-------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGTAG..................................................201.000.00-------------------1.00----------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGG.....................................................................................2411.001.001.00-----------------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGA.................................................2211.001.00---------------------------1.00--------------------
..............................................................................................................................................ACGCAGGGCCGCCAAGGCAATGGGC...................................................................................2511.001.00-1.00----------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGGC...................................................................................2611.001.001.00-----------------------------------------------
...........................................................................................................................................................................................................................TGGTGCTCTGGGTCGGCAACCTGTGG.....2611.001.00--1.00---------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAT........................................................................................211.000.00-1.00----------------------------------------------
..............................................................................................................................................ACGCAGGGCCGCCAAGGCAATGGGCCT.................................................................................2711.001.00------------------------1.00-----------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGG....................................................................................2511.001.001.00-----------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGTC................................................2211.005.00--------------------------------1.00---------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGGCT..................................................................................2711.001.00-----------------------1.00------------------------
..............................................................................................................................................ACGCAGGGCCGCCAAGGCAATGG.....................................................................................2311.001.00-1.00----------------------------------------------
..............................................................................................................................................................................................................GGCTTCCTGAACCTGGTGCTCTGGGTCGGC..............3011.001.00--1.00---------------------------------------------
...............................................................................................................................................................................................................................GCTCTGGGTCGGCAACCTGTGGT....2311.001.00--1.00---------------------------------------------
...................................................................................................................................................................................................................................TGGGTCGGCAACCTGTGGAAT..211.000.00---------------------------------------1.00--------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGG.................................................2111.001.00------------1.00-----------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGAA................................................2211.005.00-1.00----------------------------------------------
......................................................................................................................................................................................................................GAACCTGGTGCTCTGGGTCGGC..............2211.001.00----1.00-------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGAA.........................................................................................201.000.00-1.00----------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGGT...................................................................................2611.001.001.00-----------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCGG..................................................201.000.00-1.00----------------------------------------------
............................................................................................................................................................................................................................GGTGCTCTGGGTCGGCA.............1711.001.00----1.00-------------------------------------------
...........................................................................................................................................................................................................................TGGTGCTCTGGGTCGGCAA............1911.001.00------1.00-----------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATG......................................................................................2311.001.001.00-----------------------------------------------
...................................................................................................................................................................................................TGCAGGTGTTCGGCTTCA.....................................181.000.00------------------------------1.00-----------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGTAT...............................................2311.005.00----------------------------------------1.00-------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGTAGT.................................................211.000.00-------1.00----------------------------------------
......................................................................................................................................................................................................................................GTCGGCAACCTGTGGTTCG.1911.001.00-----------------------------------------1.00------
....................................................................................................................................................................................................................CTGAACCTGGTGCTCTGGGTCGG...............2311.001.00-----1.00------------------------------------------
........................................................................................................................................................................................................................ACCTGGTGCTCTGGGTCGGCA.............2111.001.00---------------1.00--------------------------------
.............................................................................................................................................................................................................CGGCTTCCTGAACCTGGTG..........................1920.500.50---------------------------------------------0.50--
...................................................................................................................................................................................CCGAGCCTTGTCTC.........................................................1440.250.25----------------------------------------------0.25-
............................................CACATCGACGTTC.................................................................................................................................................................................................1390.110.11-----------------------------------------------0.11

Antisense strand
CAAATTCTTCTAACACGCCCACCCCGCCAGAGGTGATTTTTCTGCACATCGACGTTCTCGCACTGGGACTCAGAGAGTCTGGGTTTCAGAAACCCCCACCTTGCGGAGCCTACGGATTCATTCCCCGCATGCTCATTCCTGCACGCAGGGCCGCCAAGGCAATGGGCGGGGTACCACAGCCGAGCCTTGTCTCCCTGCAGGTGTTCGGCTTCCTGAACCTGGTGCTCTGGGTCGGCAACCTGTGGTTCGT
................................................................................................................................................((((((....((((((....(((.((...))...)))..))))))...))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR189786SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189787SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................GTCTGGGTTTCAGAAACCCCCACCTTGCGGAGCCTACGGATTCATTCCCCGCATGCTCATTCCTGCACGCAGGGCCG................................................................................................. 7712.002.00---------2.00--------------------------------------
...........................................................................................................................................................................................................TTCGGCTTCCTGAACCTGGT........................... 2011.001.00---------------------1.00--------------------------
............................................................................................................................................GCACGCAGGGCCGCCAAGGCAAT....................................................................................... 2311.001.00---------------------------------1.00--------------
............ACACGCCCACCCCGCCGGT........................................................................................................................................................................................................................... 191.000.00----------------1.00-------------------------------
..................................GATTTTTCTGCACATCGAC..................................................................................................................................................................................................... 1911.001.00------------------------------------------1.00-----
...........AACACGCCCACCCCGGC.............................................................................................................................................................................................................................. 171.000.00-------------------------------1.00----------------
................................................................................................................................................................AATGGGCGGGGTACCACAGCCGAGC................................................................. 2511.001.00----------1.00-------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGGTGTTCG........................................... 2711.001.00-----------------------------1.00------------------
...............................................ATCGACGTTCTCGC............................................................................................................................................................................................. 1411.001.00--------1.00---------------------------------------
............................................CACATCGACGTTCTCGCACTG......................................................................................................................................................................................... 2111.001.00-----------------------------------1.00------------
...........AACACGCCCACCCCGCAC............................................................................................................................................................................................................................. 181.000.00------------------1.00-----------------------------
..................................................GACGTTCTCGCACTGGGACTCAGA................................................................................................................................................................................ 2411.001.00-------------------------------------------1.00----