ID: uc004bvw.9
GENE: PKN3(9)
chr9:131476351-131476525+


(1)
AGO1.ip 		(2)
AGO2.ip 		(3)
B-CELL 		(1)
BREAST 		(16)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(1)
OTHER 		(5)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GAGGCGGCCCCGGCTGCAGAGGCAGGAACGCATCTTCTCTAAACGCAGAGGTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCAGGCCAGGACTTCCTGAGGGCTTCGCAGATGAACCTCGGCATGGCGGCCTGG
...................................................((.((((..((.(((((.....(((......))).((((..((((....)))).)))))))))))..))))))...................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189784SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189783SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR343334SRR553574(SRX182780)
source: Heart. (Heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
..................................................GTGTGGAGGGAATGGGGGCTATGT.....................................................................................................24115.0015.0011.002.001.00-----------1.00------------------------
.................................CTTCTCTAAACGCAGAG.............................................................................................................................17111.0011.00----5.00-3.00-------------------------1.001.001.00----
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAG..................................................2218.008.00-4.00------------1.00-2.00---------1.00------------
..................................................GTGTGGAGGGAATGGGGGCTAT.......................................................................................................2218.008.005.00----------1.00------1.00----------------1.00---
..................................................GTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCAGT.................................................768.000.00---8.00-----------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAGT.................................................2317.008.00-3.00-------1.00-1.00-------1.00---1.00---------------
...................................................TGTGGAGGGAATGGGGGCTATGT.....................................................................................................2315.005.00--2.00----1.00-1.00---1.00-------------------------
..................................................GTGTGGAGGGAATGGGGGCTATAT.....................................................................................................2413.008.00--------3.00------------------------------
..................................................GTGTGGAGGGAATGGGGGCTATG......................................................................................................2313.003.00-3.00-------------------------------------
..................................................GTGTGGAGGGAATGGGGGCTATAAT....................................................................................................2513.008.00--3.00------------------------------------
...................................................TGTGGAGGGAATGGGGGCTAT.......................................................................................................2112.002.00------------1.00--------1.00-----------------
..................................................GTGTGGAGGGAATGGGGGCTA........................................................................................................2112.002.00--1.00-------------------1.00----------------
...................................................TGTGGAGGGAATGGGGGCTATG......................................................................................................2212.002.00--1.00--1.00---------------------------------
...................................................TGTGGAGGGAATGGGGGCTATGTT....................................................................................................2412.005.00-----2.00---------------------------------
...................................................TGTGGAGGGAATGGGGGCTATGA.....................................................................................................2312.002.00--1.00----------1.00-------------------------
.........................................................................................................................................TGAGGGCTTCGCAGATGAAC..................2012.002.00---------------2.00-----------------------
..................................................GTGTGGAGGGAATGGGGGCTATGA.....................................................................................................2412.003.00--2.00------------------------------------
................................TCTTCTCTAAACGCAGAG.............................................................................................................................1812.002.00-------------------------1.00-----1.00-------
............................................................................GAGGGAGCAGGGCTGGGGTC...............................................................................2021.501.50-----------------1.50---------------------
...............................................................................................................................CAGGACTTCCTGAGGGCTTC............................2011.001.00----------1.00----------------------------
...................................................TGTGGAGGGAATGGGGGCTATAA.....................................................................................................2311.002.00--1.00------------------------------------
......................................................................................................CTAAGCTCCCCCTTTTCTCCCAGT.................................................241.000.00--1.00------------------------------------
................................................................................................................................AGGACTTCCTGAGGGCTG.............................181.000.00---------1.00-----------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCC....................................................2011.001.00-1.00-------------------------------------
................................................................................................................................AGGACTTCCTGAGGGCTTCG...........................2011.001.00--1.00------------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAGC.................................................2311.008.00------------------------------1.00--------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCA...................................................2111.001.00-----1.00---------------------------------
..................................................GTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCCGT.................................................761.000.00---1.00-----------------------------------
...................................................TGTGGAGGGAATGGGGGCTATGTAT...................................................................................................2511.005.00-----------------------------1.00---------
.......................................................................................................TAAGCTCCCCCTTTTCACAC....................................................201.000.00-1.00-------------------------------------
............................................GCAGAGGTGTGGAGGGTC.................................................................................................................181.000.00--------------------1.00------------------
...................................................TGTGGAGGGAATGGGGGCTATGAT....................................................................................................2411.002.00------------1.00--------------------------
.........................GAACGCATCTTCTCTAAACGCAGAG.............................................................................................................................2511.001.00---------------------------1.00-----------
.............................................................................................................CCCCCTTTTCTCCCAGAC................................................181.000.00----------------------------1.00----------
..................................TTCTCTAAACGCAGAG.............................................................................................................................1621.001.00----1.00----------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAGA.................................................2311.008.00-1.00-------------------------------------
.........CCGGCTGCAGAGGCAGGA....................................................................................................................................................1811.001.00----------1.00----------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCC.....................................................1911.001.00-----1.00---------------------------------
..................................................GTGTGGAGGGAATGGGGGCT.........................................................................................................2011.001.00-------1.00-------------------------------
...................................................TGTGGAGGGAATGGGGGCT.........................................................................................................1911.001.00-------1.00-------------------------------
....CGGCCCCGGCTGCAGTGC.........................................................................................................................................................181.000.00------1.00--------------------------------
................................................................................................................................AGGACTTCCTGAGGGCTT.............................1830.670.67------0.67--------------------------------
...........................................................................TGAGGGAGCAGGGCTGGGGT................................................................................2020.500.50------------------------------------0.50--
...........GGCTGCAGAGGCAGGAAC..................................................................................................................................................1820.500.50-------------------------------------0.50-

Antisense strand
GAGGCGGCCCCGGCTGCAGAGGCAGGAACGCATCTTCTCTAAACGCAGAGGTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCAGGCCAGGACTTCCTGAGGGCTTCGCAGATGAACCTCGGCATGGCGGCCTGG
...................................................((.((((..((.(((((.....(((......))).((((..((((....)))).)))))))))))..))))))...................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189784SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189783SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR343334SRR553574(SRX182780)
source: Heart. (Heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................AGGGCTTCGCAGATGGC................... 171.000.00------------------------1.00--------------
......................................................................................................................CTCCCAGGCCAGGACTT........................................ 1730.330.33------------------0.33--------------------
............................................................................GAGGGAGCAGGGCTGGGG................................................................................. 1860.170.17-------------------0.17-------------------
........................................................................................................................CCCAGGCCAGGACTTC....................................... 1680.120.12--------------------------------------0.12