ID: uc004aub.2
GENE: PHF2(9)
chr9:96421593-96421842+


(2)
AGO2.ip
(1)
B-CELL
(5)
BRAIN
(5)
BREAST
(23)
CELL-LINE
(2)
CERVIX
(6)
HEART
(2)
HELA
(1)
LIVER
(2)
OTHER
(19)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
TCTCTGGTACTTGGTTTGTCCACCTATTGATGGGGGCTCACAGCAGAGACCTCTTGCCAGGGCAGAGTTTGGCTCGGAAGCCCCTCGCCTCATGCTCATCTGAGTGGCTCGGCAGTCAGGCGACAGCCTGCAAGAATGCAGGGGTAAGTCAGGACCACGGGAGGTGTCTGGTGCTGACCCTGGGTCCGGTTGTCCTGCAGGCTTTGGCAGAGCATGAGGACGAGCTCCCGGAGCACTTCAAACCTTCACA
........................................................................................................................................(((((((...((((.(((((.((((.(((.......)))...))))))))))))).)))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189786GSM416733(GSM416733)
HEK293. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR189782SRR553574(SRX182780)
source: Heart. (Heart)
GSM532886(GSM532886)
G850T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGT.................................................21122.009.004.002.00--1.002.00-3.00-----1.00---1.00-2.00-------1.00-1.00---------1.00-----1.00-----1.00--------1.00----------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGA.................................................21116.009.00-3.00---1.001.00-----1.00-------1.001.00-1.00-------1.00------1.00-----------------1.001.00-1.00----1.00----1.00-
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGGGT........................................................................................26112.003.00--5.006.00-------------------------------1.00-----------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAG..................................................2019.009.00-1.00--1.00---1.00-1.00---1.00-1.00-----------------------1.00------------1.00-------------1.00---
...................................................................................................................................................................................CTGGGTCCGGTTGTCCTGCAGT.................................................225.000.00----------1.00-------1.00---------------1.00---------1.00----------------1.00---------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACG...........................................................................................2415.005.00-1.00---1.00-----2.00-----1.00-----------------------------------------------------
...................................................................................................................................................................................CTGGGTCCGGTTGTCCTGCAGA.................................................224.000.00------2.00---1.00-------------------------------------------1.00----------------
..................................................................................................................................................................................CCTGGGTCCGGTTGTCCTGCAGAAA...............................................253.000.00---------3.00-------------------------------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGG..........................................................................................2413.003.00----1.00---------------------------1.00----1.00---------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGTT................................................2213.009.00------1.001.00-----------------1.00---------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGG.........................................................................................2613.003.002.00----------------------------------------------------------------1.00-----
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGGG.........................................................................................2513.003.002.00---------------------------1.00------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGAA................................................2213.009.00----1.00--------------------------------------1.00--1.00------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACT..............................................................................................211.000.00-------------------------------------------------1.00---------------------
..........................................................................................................................................................................................................TTTGGCAGAGCATGAGGACG............................2011.001.00------------------------------------1.00----------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAG..................................................................................................1811.001.00------------------------------------------------------------------1.00----
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCAAAA..........................................................................................251.000.00---------------------------------------------------------------1.00-------
...........................................................................................................................................................................................................TTGGCAGAGCATGAGAC..............................171.000.00----------------------------------------------------------1.00------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAAT.................................................211.000.001.00----------------------------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGAT................................................2211.009.00------------------------------1.00----------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGACCACG...........................................................................................2511.001.00--------------------1.00--------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGTAG...............................................2311.009.00---------------1.00-------------------------------------------------------
..................................................................................................................................................................................CCTGGGTCCGGTTGTCCTGCAGT.................................................231.000.00------------------1.00----------------------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCAAGGG.........................................................................................251.000.00-----------------------------------------------1.00-----------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGGT........................................................................................2711.003.00-----------------------------------------1.00-----------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGACA..............................................................................................221.000.00------------------------1.00----------------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGACCAC............................................................................................2411.001.00----1.00------------------------------------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGA................................................................................................2011.001.00--------------------------------------------------------------------1.00--
...................................................................................................................................................GTCAGGACCACGGGAGG......................................................................................1711.001.00--------1.00--------------------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCGGAA................................................221.000.00------------1.00----------------------------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACG...........................................................................................2311.001.00------------------------------------------------1.00----------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCAA............................................................................................221.000.001.00----------------------------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGGTCT......................................................................................2911.003.00----------------------1.00------------------------------------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGGT.........................................................................................2611.001.00----------------1.00------------------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGC.................................................2111.009.00--------1.00--------------------------------------------------------------
...........................................................................................................................................................................................................................ACGAGCTCCCGGAGCAC..............1711.001.00--------------------------------------------------1.00--------------------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGACCACGG..........................................................................................2511.001.00--------------------------------------------------------------1.00--------
.......................................................................................................................................ATGCAGGGGTAAGTCAGGA................................................................................................1911.001.00------------------------------------------1.00----------------------------
......................................................................................................................................AATGCAGGGGTAAGTCAGGAACAC............................................................................................2411.001.00--------------------------1.00--------------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGAAT...............................................2311.009.001.00----------------------------------------------------------------------
......................................................................................................................................AATGCAGGGGTAAGTCA...................................................................................................1711.001.00----------------------------------------------------1.00------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCAGTTT...............................................2311.009.00--------------1.00--------------------------------------------------------
..........................................................................................................................................CAGGGGTAAGTCAGGACCACGGGT........................................................................................241.000.00---------------1.00-------------------------------------------------------
.....................................................................................................................................................CAGGACCACGGGAGGGGTC..................................................................................191.000.00---------------------------------1.00-------------------------------------
....................................................................................................................................................................................TGGGTCCGGTTGTCCTGCACT.................................................211.000.00-----1.00-----------------------------------------------------------------
...................................................................................................................................AAGAATGCAGGGGTAAGTCAGGACCACGGG.........................................................................................3011.001.00-------------1.00---------------------------------------------------------
........................................................................................................................................TGCAGGGGTAAGTCAGGACCACGGGG........................................................................................2611.003.00--1.00--------------------------------------------------------------------
..................................................................................................................................................................................................................AGCATGAGGACGAGCT........................1620.500.50----------------------------------------------------------------------0.50

Antisense strand
TCTCTGGTACTTGGTTTGTCCACCTATTGATGGGGGCTCACAGCAGAGACCTCTTGCCAGGGCAGAGTTTGGCTCGGAAGCCCCTCGCCTCATGCTCATCTGAGTGGCTCGGCAGTCAGGCGACAGCCTGCAAGAATGCAGGGGTAAGTCAGGACCACGGGAGGTGTCTGGTGCTGACCCTGGGTCCGGTTGTCCTGCAGGCTTTGGCAGAGCATGAGGACGAGCTCCCGGAGCACTTCAAACCTTCACA
........................................................................................................................................(((((((...((((.(((((.((((.(((.......)))...))))))))))))).)))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189786GSM416733(GSM416733)
HEK293. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR189782SRR553574(SRX182780)
source: Heart. (Heart)
GSM532886(GSM532886)
G850T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
...................................GCTCACAGCAGAGACCTCTG................................................................................................................................................................................................... 201.000.00-------------------------------------------------------1.00---------------
..........................................................................................................................................................CCACGGGAGGTGTCT................................................................................. 1520.500.50---------------------0.50-------------------------------------------------