ID: uc003yzv.2
GENE: NRBP2(9)
chr8:144921223-144921393-


(2)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
BRAIN 		(5)
BREAST 		(20)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(6)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCACTCTTTCTCCCGCCCCTTGGCAGTGTGGCACCGAATCTTCTCCAATGGTAAGTGCGGACTTTGGGGGGACGGGGTCCTGGAGAGGTCCCCGCCCGCTCAGCTCTGCGCCCTCCCACAGCACTTCCAGATGATCTCCGAAGCCCCATCCGCGCTGAGCGAGAGGAACTT
......................................................(((((((..((((((((.(((((.(((....))).)))))))).))))).)))))))............................................................
..................................................51....................................................................121................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038861(GSM458544)
MM466. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577579(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577742(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189783SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...................................................TAAGTGCGGACTTTGGGGGGACGG................................................................................................24114.0014.002.001.002.00--1.003.00----1.001.00-------1.00-1.00-1.00-------------------------------
...................................................TAAGTGCGGACTTTGGGGGGACGGT...............................................................................................2519.0014.002.00-2.00-------1.00-1.00--------------------1.00----1.00---------1.00-------
..................................................GTAAGTGCGGACTTTGGGGGGACGG................................................................................................2516.006.001.001.00--4.00---------------------------------------------------
...................................................TAAGTGCGGACTTTGGGG......................................................................................................1815.005.001.003.00-1.00----------------------------------------------------
.......................................................TGCGGACTTTGGGGGGACGGGGTC............................................................................................2414.004.001.00----------------2.00--1.00-----------------------------------
....................................................AAGTGCGGACTTTGGGGGGACGG................................................................................................2314.004.001.001.00-1.00--------------------------------------1.00-------------
...................................................TAAGTGCGGACTTTGGGGGGACG.................................................................................................2314.004.00----1.00------1.00--1.00---1.00-------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGACGGTT..............................................................................................2614.0014.00-------1.00-----------2.00-------------------------------1.00----
...................................................TAAGTGCGGACTTTGGGGG.....................................................................................................1914.004.001.001.00---------1.00-1.00------------------------------------------
....................................................AAGTGCGGACTTTGGGGGGACGGA...............................................................................................2413.004.00--2.00-----------------------------------------------1.00-----
...................................................TAAGTGCGGACTTTGGGGGGA...................................................................................................2113.003.00-2.00---------------------------------1.00--------------------
...................................................TAAGTGCGGACTTTGGGGGGACGGGG..............................................................................................2613.003.001.001.00----1.00-------------------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGACGT................................................................................................2413.004.00--------------1.00---1.00--------------------------1.00----------
..................................................GTAAGTGCGGACTTTGGGGTAT...................................................................................................2213.001.00------------------------------------1.001.00---------1.00--------
.......................................................TGCGGACTTTGGGGGGACGG................................................................................................2012.002.00----------1.00--------------1.00------------------------------
....................................................AAGTGCGGACTTTGGGGGGACGGT...............................................................................................2412.004.00-----------1.00------------------1.00-------------------------
..................................................GTAAGTGCGGACTTTGGGGGGACG.................................................................................................2412.002.00---------2.00----------------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGACA.................................................................................................2312.001.00--1.00------------1.00----------------------------------------
....................................................AAGTGCGGACTTTGGGGGGA...................................................................................................2012.002.00---1.00-------------------------1.00--------------------------
...................................................TAAGTGCGGACTTTGG........................................................................................................1612.002.001.001.00------------------------------------------------------
.....................................................AGTGCGGACTTTGGGGGGACGGGGTCCTGGAGAGGTCCCCGCCCGCTCAGCTCTGCGCCCTCCCACAG..................................................6812.002.00----------------2.00---------------------------------------
.......................................................TGCGGACTTTGGGGGGACG.................................................................................................1912.002.00--------------1.00-------------------1.00---------------------
...................................................TAAGTGCGGACTTTGGGGGGACGGA...............................................................................................2512.0014.00------------1.00---------------------------------1.00---------
...................................................TAAGTGCGGACTTTGGGGGGACGA................................................................................................2412.004.00--2.00-----------------------------------------------------
..................................................GTAAGTGCGGACTTTGGGGGGACGGGGTCCT..........................................................................................3111.001.00---------1.00----------------------------------------------
.......................................................TGCGGACTTTGGGGGGAC..................................................................................................1811.001.00-------------1.00------------------------------------------
..................................................GTAAGTGCGGACTTTGGGT......................................................................................................191.000.00---1.00----------------------------------------------------
...................................................TAAGTGCGGACTTTGGGAAAA...................................................................................................2111.001.00--------1.00-----------------------------------------------
.........................................................................................................................CACTTCCAGATGATCTCCGAAGCC..........................2411.001.00---------------------------1.00----------------------------
.......................................................TGCGGACTTTGGGGGGACGGGGTAAT..........................................................................................261.000.001.00-------------------------------------------------------
.......................................................TGCGGACTTTGGGGGGAG..................................................................................................181.000.00---1.00----------------------------------------------------
....................................................AAGTGCGGACTTTGGGGGGACGGAA..............................................................................................2511.004.00----------1.00---------------------------------------------
..................................................GTAAGTGCGGACTTTGGGGA.....................................................................................................2011.001.00--------1.00-----------------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGACGTA...............................................................................................2511.004.00----------------------------------------------------1.00---
...................................................TAAGTGCGGACTTTGGGGGGACAG................................................................................................2411.001.00-1.00------------------------------------------------------
....................................................AAGTGCGGACTTTGGGGGGACG.................................................................................................2211.001.00----------1.00---------------------------------------------
....................................................AAGTGCGGACTTTGGGGGGACA.................................................................................................2211.001.00-----------------------------------------1.00--------------
...........CCCGCCCCTTGGCAGCCGG.............................................................................................................................................191.000.00-------------------------------1.00------------------------
.......................................................TGCGGACTTTGGGGGGACGGGGTCA...........................................................................................2511.004.00-1.00------------------------------------------------------
.......................................................TGCGGACTTTGGGGGGACGGGTTT............................................................................................241.000.00-------1.00------------------------------------------------
..................................................GTAAGTGCGGACTTTGGGGGGA...................................................................................................2211.001.00---------1.00----------------------------------------------
........................................................GCGGACTTTGGGGGGAC..................................................................................................1711.001.00--------1.00-----------------------------------------------
...................................................TAAGTGCGGACTTTGGGAA.....................................................................................................1911.001.001.00-------------------------------------------------------
...................................................TAAGTGCGGACTTTGGGGA.....................................................................................................1911.005.00-----1.00--------------------------------------------------
...................................................TAAGTGCGGACTTTGGGGGG....................................................................................................2011.001.001.00-------------------------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGATT.................................................................................................2311.003.00----------------------------1.00---------------------------
....................................................AAGTGCGGACTTTGGGGGGACAA................................................................................................2311.001.00--------------------------------------------1.00-----------
...................................................TAAGTGCGGACTTTGGGGGGATGG................................................................................................2411.003.00-1.00------------------------------------------------------
....................................................AAGTGCGGACTTTGGGGGGAC..................................................................................................2111.001.00-------------------------------------------1.00------------
....................................................AAGTGCGGACTTTGGGGGGACGGATAA............................................................................................2711.004.00---------------------1.00----------------------------------
..................................................GTAAGTGCGGACTTTGGGG......................................................................................................1911.001.00---1.00----------------------------------------------------
.......................................................TGCGGACTTTGGGGGGACGGGAAA............................................................................................241.000.00--------------------------------1.00-----------------------
...........CCCGCCCCTTGGCAGTGTGGCACCGAA.....................................................................................................................................2711.001.00--------1.00-----------------------------------------------
..................................................GTAAGTGCGGACTTTGAAAG.....................................................................................................201.000.00----------------------------------------1.00---------------
...................................................TAAGTGCGGACTTTGGGGGGAC..................................................................................................2211.001.00------1.00-------------------------------------------------
..................................................GTAAGTGCGGACTTTGGGGGGACGGGG..............................................................................................2711.001.00---------------------1.00----------------------------------
...................................................TAAGTGCGGACTTTGGGGGTA...................................................................................................2111.004.00-------1.00------------------------------------------------
...................................................TAAGTGCGGACTTTGGG.......................................................................................................1711.001.00-----------------------------------------------------1.00--
..................................................GTAAGTGCGGACTTTGGGGGGAAA.................................................................................................2411.001.00-------1.00------------------------------------------------
.......................................................TGCGGACTTTGGGGGGACGGGTTA............................................................................................241.000.00-------1.00------------------------------------------------
............................................................................................CGCCCGCTCAGCTCTGCGCCCTT........................................................231.000.00------------------------------------------------------1.00-
..........................................................GGACTTTGGGGGGACGGGGTC............................................................................................2111.001.00-----1.00--------------------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGAAA.................................................................................................2311.003.00---------------1.00----------------------------------------
...................................................TAAGTGCGGACTTTGGGGGGACGGTTT.............................................................................................2711.0014.00---------------------------------------1.00----------------
...................................................TAAGTGCGGACTTTGGGGGGACGGG...............................................................................................2511.001.00-------------1.00------------------------------------------
..................................................GTAAGTGCGGACTTTGGGGGGAGG.................................................................................................2411.001.001.00-------------------------------------------------------
.................................................................................................................................GATGATCTCCGAAGC...........................1520.500.50--------0.50-----------------------------------------------
.............................................................................................................................................AGCCCCATCCGCG.................1380.120.12-------------------------------------------------------0.12

Antisense strand
CCACTCTTTCTCCCGCCCCTTGGCAGTGTGGCACCGAATCTTCTCCAATGGTAAGTGCGGACTTTGGGGGGACGGGGTCCTGGAGAGGTCCCCGCCCGCTCAGCTCTGCGCCCTCCCACAGCACTTCCAGATGATCTCCGAAGCCCCATCCGCGCTGAGCGAGAGGAACTT
......................................................(((((((..((((((((.(((((.(((....))).)))))))).))))).)))))))............................................................
..................................................51....................................................................121................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038861(GSM458544)
MM466. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577579(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577742(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189783SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................CCCTCCCACAGCACTTG............................................ 171.000.00-----1.00--------------------------------------------------
......................................................................................................GCTCTGCGCCCTCCCGG.................................................... 171.000.00-------------------------------------------------1.00------
.........................................................................................................................CACTTCCAGATGATCTTATG.............................. 201.000.00-----------------------1.00--------------------------------
........TCTCCCGCCCCTTGGCTCGC............................................................................................................................................... 201.000.00--------------------------1.00-----------------------------
..............................................................................................................CCCTCCCACAGCACTTGT........................................... 181.000.00-----1.00--------------------------------------------------