ID: uc003xat.2
GENE: HR(1)
chr8:21973892-21974141-


(1)
AGO1.ip
(1)
AGO2.ip
(2)
BREAST
(12)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(22)
SKIN
(1)
UTERUS

Sense strand
ACTTTAGGGTCTCTCCAGCAGTTCTGAGTCCCGGTTTTGGCCACAGGCTTTGAGGTGTCCAGTGGTGCATCCAGGAATCTGCTCTCTGAGAGCCAGGGGTCGGGGGTGGTTGTCATTAGAGGAAGCGAACCTCAGGGACCAGGGGGACAGGGAGAGGATGTGTGATCTTGAGCCTCACTGTCCATGTCCCCCCGACACAGGTGCAGGGCCTGGTGAGCACAGTCAGCGTCACTCAGCACTTCCTCTCCCC
.............................................................................................................................................((((((((.(((.((((.((..........)).)).)).))).))))))))..........................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR038856(GSM458539)
D11. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................TCACTGTCCATGTCCCCCCGAC......................................................2219.009.00--3.00------2.001.00----------1.00----1.00--------------1.00----
..........................................................................................................................................CCAGGGGGACAGGGAGAGGATG..........................................................................................2216.006.00----2.001.00-----1.00------------------------1.001.00--------
..............................................................................................................................................................................TCACTGTCCATGTCCCCCCGAT......................................................2214.003.00---2.00--2.00---------------------------------------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGATTAA........................................................................................2413.001.003.00---------------------------------------------
...........................................................................................................................................CAGGGGGACAGGGAGAGGATGTGT.......................................................................................2413.003.001.00---------------1.00----------------1.00------------
..............................................................................................................................................................................TCACTGTCCATGTCCCCCCGA.......................................................2113.003.00---1.00------------------1.00-------1.00---------------
.........................................................................................................................................ACCAGGGGGACAGGGAGAGGAT...........................................................................................2212.002.00---------------------------1.00------------1.00-----
...........................................................................................................................................CAGGGGGACAGGGAGAGGATG..........................................................................................2112.002.00---------------1.00-1.00----------------------------
..............................................................................................................................................................................TCACTGTCCATGTCCCCCCGACA.....................................................2312.002.00----1.00------------------------------1.00----------
..............................................................................................................................................................................TCACTGTCCATGTCCCCCCGACT.....................................................2312.009.00-----1.00--------------------------------1.00-------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGAAT..........................................................................................2221.000.50-------------------------1.00--------------------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGATGAA........................................................................................2411.006.00----------------------------1.00-----------------
.........................................................................................................................................ACCAGGGGGACAGGGAGAGG.............................................................................................2011.001.00--------------------------------1.00-------------
...................................................................................................................................................................................GTCCATGTCCCCCCGACACAGGTGCAGGGC.........................................3011.001.00-----------------------------1.00----------------
.........................................................................................................................................ACCAGGGGGACAGGGAGAGGA............................................................................................2111.001.00-------------------1.00--------------------------
.....................................................................................................................................................................................................................TGAGCACAGTCAGCGTC....................1711.001.00------------------1.00---------------------------
.........................................................................................................................................ACCAGGGGGACAGGGAGAGGAAA..........................................................................................2311.001.00-----------1.00----------------------------------
.........................................................................................................................................ACCAGGGGGACAGGGAGA...............................................................................................1811.001.00------------------------------------------1.00---
...............................................................GGTGCATCCAGGAATCTGCTCTCTGAG................................................................................................................................................................2711.001.00-------------1.00--------------------------------
..........................................................................................AGCCAGGGGTCGGGGGGGG.............................................................................................................................................191.000.00----------------------------------1.00-----------
...................................................................CATCCAGGAATCTGCTCTCTGAA................................................................................................................................................................231.000.00-----------------------1.00----------------------
..................................................................................................................................CTCAGGGACCAGGGGGACA.....................................................................................................1911.001.00--------1.00-------------------------------------
...........................................................................................................................................CAGGGGGACAGGGAGAGGATGTGAA......................................................................................251.000.00----------1.00-----------------------------------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGATGAGA.......................................................................................2511.006.00------------------------1.00---------------------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGATGA.........................................................................................2311.006.00-----1.00----------------------------------------
.........................................................................................................................................ACCAGGGGGACAGGGAGAGGATT..........................................................................................2311.002.00-1.00--------------------------------------------
...........................................................................................................................................CAGGGGGACAGGGAGAGGATGTAT.......................................................................................241.000.00--------------1.00-------------------------------
......................................................................................................................................................................................................................................ACTCAGCACTTCCTCTCCCC2011.001.00-------1.00--------------------------------------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGAT...........................................................................................2111.001.00---------------------------------------1.00------
.........................................................................................................................................ACCAGGGGGACAGGGAGAGGATG..........................................................................................2311.001.00-1.00--------------------------------------------
................................................................................................................................................................................ACTGTCCATGTCCCCC..........................................................1620.500.50-------------0.50--------------------------------
..........................................................................................................................................CCAGGGGGACAGGGAGAGGA............................................................................................2020.500.50-0.50--------------------------------------------
............................................................................................................................................AGGGGGACAGGGAGAGGA............................................................................................1850.200.20--------------------------------------------0.20-

Antisense strand
ACTTTAGGGTCTCTCCAGCAGTTCTGAGTCCCGGTTTTGGCCACAGGCTTTGAGGTGTCCAGTGGTGCATCCAGGAATCTGCTCTCTGAGAGCCAGGGGTCGGGGGTGGTTGTCATTAGAGGAAGCGAACCTCAGGGACCAGGGGGACAGGGAGAGGATGTGTGATCTTGAGCCTCACTGTCCATGTCCCCCCGACACAGGTGCAGGGCCTGGTGAGCACAGTCAGCGTCACTCAGCACTTCCTCTCCCC
.............................................................................................................................................((((((((.(((.((((.((..........)).)).)).))).))))))))..........................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR038856(GSM458539)
D11. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................GGACAGGGAGAGGATGTGTGATCTTGA............................................................................... 2711.001.00-------1.00--------------------------------------
.............................................................................................................................................................................CTCACTGTCCATGTCCTA........................................................... 181.000.00------------1.00---------------------------------
..............................................................................................................................................GGGGACAGGGAGAGGGGGT......................................................................................... 191.000.00-------------------------------1.00--------------
.........................................................................................GAGCCAGGGGTCGGGGCCA.............................................................................................................................................. 191.000.00--------1.00-------------------------------------
..............................................................................................................................................................................................CCCGACACAGGTGCAGCTGA........................................ 201.000.00--------------------1.00-------------------------
...................AGTTCTGAGTCCCGGCTG..................................................................................................................................................................................................................... 181.000.00-1.00--------------------------------------------
..........................................................................................................................................................................................................................................AGCACTTCCTCTCCCCTAT 191.000.00------------1.00---------------------------------
..........CTCTCCAGCAGTTCTG................................................................................................................................................................................................................................ 1640.500.50-------------------------------------------0.50--
................................................................................................GGGTCGGGGGTGGTTG.......................................................................................................................................... 1660.170.17---------------------------------------------0.17