ID: uc003upz.5
GENE: ARPC1B(5)
chr7:98988673-98988850+


(1)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(15)
BREAST 		(48)
CELL-LINE 		(2)
CERVIX 		(3)
FIBROBLAST 		(3)
HEART 		(8)
HELA 		(8)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(35)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGAAGATGGCGTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCA
......................................................................((((.(((((.((((...(((..((((....))))..)))...)))))))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189787SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR038857(GSM458540)
D20. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR189783SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR038861(GSM458544)
MM466. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029127(GSM416756)
A549. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335SRR029128(GSM416757)
H520. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
...................................................................CCAGGGGAGGAGGTGAGTGCAG.........................................................................................22128.0028.005.003.008.00--1.00---1.002.00--1.00---1.00--------1.00--------------------1.00----1.00-1.00--------------------1.00-----------------------------------------------------------1.00---
....................................................................CAGGGGAGGAGGTGAGTGCAG.........................................................................................21117.0017.00-1.00----------------1.001.001.00----1.001.00---1.00---1.00------1.00----1.00---1.00------1.001.00-------------1.00-------1.00--------------1.00----1.00--------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAG..................................................24113.0013.001.00-1.004.00-1.00--1.001.001.00--1.00-------------------------------------------------------------------------------1.00---------------------------1.00-----------------
..................................................GTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAG..................................................78113.0013.00----12.00--------------------------------------------------------------1.00-----------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGC...........................................................................................21113.0013.008.00------------------1.00----1.00-------1.00-----------------------1.00----------------------------1.00-----------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGC...........................................................................................20113.0013.002.00-8.00-----------2.00--------------------------------------------------------------------------------------------------------------------1.00-------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGT.................................................25112.0013.00--1.002.00-1.00-------1.00-----------------------------1.00-----------1.00-1.00---1.00-------------------------------------------1.00-------1.001.00------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGT.................................................21110.003.001.00--1.00-----------------------1.00-2.00--------------------------------1.00--------------1.00-1.00----------------------1.00--------------------------1.00---------
...................................................................CCAGGGGAGGAGGTGAGTGCA..........................................................................................21110.0010.00-2.003.00--1.00-----------1.00-----------------1.00--1.001.00---------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGC...........................................................................................19110.0010.003.00--------2.00----1.00--------1.00-------1.00---------------1.00------------------------------------------------1.00------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGAA................................................288.000.00-8.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGA........................................................................................2317.007.00-----------5.00-----------1.00-------------------------------------------------------------------------------------1.00-----------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGT........................................................................................2216.0017.001.001.00----3.00---------------------------------------------------------------1.00--------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGA...........................................................................................2016.001.00-------6.00-----------------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGA.................................................2516.0013.005.00---------------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGTAA......................................................................................2415.0017.005.00------------------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCA..........................................................................................2015.005.00-----------------1.001.00-------------------------1.00----1.00-------------------------------1.00---------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAG.........................................................................................2315.005.00-4.00------------------------------------------------------------------------------------------------------------1.00----------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCT.....................................................2314.004.00---------1.00------1.00---------------------------------------------------------------------------------------------------1.001.00---------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGA.................................................2114.003.00--------1.00--------------------------------1.00-----------1.00----1.00--------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCA...................................................2314.004.00---2.00-1.00--------------------------------------------------------------------1.00----------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAG..................................................2314.004.00---2.00------------------------------------1.00-1.00------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAG..................................................2013.003.002.00--1.00---------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAT..................................................2613.001.003.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAA.........................................................................................2213.0010.00--2.00-----------------------------------1.00----------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCA...................................................2413.003.00---1.00---------------1.00------------------------------------------------------------------------------1.00----------------------------------------
.........................................................................................AGGAGTGGGACACCGTGACTC....................................................................2113.003.00------3.00------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAG..................................................2513.003.00---------1.001.00-----------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGT........................................................................................2313.0028.00-1.00----1.00-1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCA..........................................................................................2213.003.002.00--------------------------------------1.00---------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAA.........................................................................................2113.005.00------------------------------------------------2.00--------------------------------------------------1.00---------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGA......2313.003.00------------3.00------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................ACTCACAGCTCTCTCCCCTCAGT.................................................233.000.003.00------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................ACACCGTGACTCACAGACAA............................................................202.000.00----------------------2.00--------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCA......................................................202.000.00---------------------------------2.00---------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCC......................................................2212.002.00--------------------------------------------------------1.00-------------------------------------1.00--------------------------------------------
.............GCACCGTCTGCCTGGCTGATGCCGAC...........................................................................................................................................2612.002.00----------------------------------------------------------------1.00-------------------------------------------------------------------1.00------
............................................................................................................TCACAGCTCTCTCCCCTCAGTA................................................2212.003.00---------------------------------------------------------------------1.00-------------------1.00-------------------------------------------------
....................................................................................................................................................AAACACTACCACTGCTGGCGCTG.......2312.002.00----------------------------1.00---------------------------------------------------------------------------------------------1.00----------------
....................................................................CAGGGGAGGAGGTGAGTGCAGA........................................................................................2212.002.00-1.00---------------------1.00-------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGA........................................................................................2412.002.00-1.00--------------------------------------------------------------------------------------1.00--------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAT.......................................................................................2312.002.00----------------------------------1.00-1.00------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAAA......................................................................................2512.007.00-1.00------1.00----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAATCCA........................192.000.00-------1.00---------------------------------------------------------------------------------------------------1.00-------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTC....................................................2212.002.001.00-------------1.00----------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGAA..........................................................................................202.000.00--------------------------------------------1.00--------------------------------------------------------1.00-------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGTT.......................................................................................2412.0028.00-2.00-----------------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGA...........................................................................................192.000.00------------------------2.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CACTACCACTGCTGGCGCTGACCT...2412.002.00------------2.00------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGTAT......................................................................................2612.005.00-2.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAT.........................................................................................2312.003.00----------------------------------------------------1.00------------------1.00-------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAA................................................2612.0013.00---------------------2.00---------------------------------------------------------------------------------------------------------------------
..............................GATGCCGACAAGAAGATGGCC...............................................................................................................................211.000.00------------------------------------------------------------------------------------------------------------------------------1.00------------
.....................................................................AGGGGAGGAGGTGAGTGCAG.........................................................................................2011.001.00---------------------------------------------------------------1.00---------------------------------------------------------------------------
......CACGACAGCACCGTCTGCCTGGC.....................................................................................................................................................2311.001.00----------------------------1.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................GTCGCGACTCTGGCC..................................1511.001.00--------------------------------------------------------------------------------------------1.00----------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTTT...................................................2511.004.00---------------------------------------------------1.00---------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGT........................................................................................2411.005.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGTAA...............................................2311.003.00------------------------------------------------------------------------------1.00------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAA..................................................2611.001.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................TGAAACACTACCACTGCTGGCGCTGACC....2811.001.00----------------------------1.00--------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAAAT.......................................................................................2411.0010.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAACCC.........................181.000.00----------------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTGT...................................................2511.004.00---------1.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGAAAG..............................................2411.003.00------------------------------------------------------------------------------------------1.00------------------------------------------------
...................................................................................GTGCAGAGGAGTGGGACA.............................................................................1811.001.00----------------------------------------------------------------------------------------------------------------------1.00--------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGTAA...............................................2611.004.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCCT..................................................2611.001.00--------1.00----------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAATT.......................................................................................2311.005.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCT...................................................2511.001.00---------------------------------------------------1.00---------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAAA......................................................................................2411.002.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTC....................................................2411.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGATA...............................................2611.004.00-----------------------------------------------------------------1.00-------------------------------------------------------------------------
.................................................................................................................................GTCGCGACTCTGGC...................................1411.001.00------------------------------------------------------------------------------------------------------------1.00------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGTT.......................................................................................2511.005.00--------1.00----------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCCG.........................................................................................2211.0013.00------------------------------------------------------------------1.00------------------------------------------------------------------------
............AGCACCGTCTGCCTGGCTGA..................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------------1.00-----------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCCG..................................................2411.002.00---------------------------------------------------------------------------------------1.00---------------------------------------------------
..............................GATGCCGACAAGAAGCTCA.................................................................................................................................191.000.00----------------------------------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCT...................................................2311.002.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................ACTCACAGCTCTCTCCCCTCAGA.................................................231.000.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
.............................TGATGCCGACAAGAAGATGGC................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------------------------------------1.00-----------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGATAG..............................................2911.003.00-----------------------------------------------------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................CTGGCCTCTGAAACACTACC....................2011.001.00-----------------------------------------------------------------------------------1.00-------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTG............................................................................................1911.001.00--------------------------------------------------1.00----------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAAA........................................................................................2411.003.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCATT.................................................211.000.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCTGGCTGA..................................................................................................................................................2211.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCC........................................................2011.001.00--------------------------------------------------------------------------------------------------------1.00----------------------------------
............................................................................................................TCACAGCTCTCTCCCCGCAG..................................................201.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
.TAAGCCACGACAGCACCGTCTGCCTGGCTGA..................................................................................................................................................3111.001.00-------------------------1.00-----------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAATA.......................................................................................2511.003.00---------------------------1.00---------------------------------------------------------------------------------------------------------------
..............................GATGCCGACAAGAAGATG..................................................................................................................................1811.001.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGTTC......................................................................................2511.0028.00--------------------1.00----------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGAA..........................................................................................221.000.00------------------------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................CTACCACTGCTGGCGCTGACCTTC.2411.001.00-------------------------1.00-----------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAT.......................................................................................2411.007.00-------------------------------------------------------------------------1.00-----------------------------------------------------------------
.................................................................................................................................................CTGAAACACTACCACTGCTGG............2111.001.00---------------------------1.00---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGACCTTCACC311.000.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAAT........................................................................................2311.0010.00--------------------------1.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................GCGACTCTGGCCTCTGAA............................1811.001.00----------------------------------------------------------------------------------------------------------------------------------1.00--------
................................................................................................................................................TCTGAAACACTACCACTGCTGGC...........2311.001.00-------------------------------------------------------------------------------------------------1.00-----------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCGG....................................................2411.002.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCCGA.................................................211.000.00----------------------------------------------------------------------------------------------------------------1.00--------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAG.......................................................................................2311.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGTTT......................................................................................2411.0017.00-------------------------------------------------------------------------------------------------------1.00-----------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGT...........................................................................................2011.001.00-------------------------------------------------------------------------------------------------------------------------------------1.00-----
........................................................................................................................................................ACTACCACTGCTGGCGCTG.......1911.001.00------------------------------------------------------------1.00------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCCGGC.....................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------------------1.00--------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGACCTTC.2811.001.00------------------------------------1.00------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAT................................................2611.0013.00----------------------------------------------------------------------------------------------------------------------------1.00--------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGCA................................................281.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAT..................................................2411.004.00---------------------------------------------------------------------------------------------------------------1.00---------------------------
.....................................................................................GCAGAGGAGTGGGACACCGTGAC......................................................................2311.001.00--------------------------------------------------------------------------------------------------------------------------------------1.00----
..................................................................CCCAGGGGAGGAGGTGAGTGCAAC........................................................................................2411.003.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................CGACTCTGGCCTCTGAAACACTACCACTGCTG.............3211.001.00--------------------------------------------------------------------------------------1.00----------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGT.................................................271.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAT..................................................2511.003.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCGA.....................................................2311.001.00----------------1.00--------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGA.................................................271.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------
............AGCACCGTCTGCCTGGCTGATGCCGATA..........................................................................................................................................281.000.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................CGCGACTCTGGCCTC................................1511.001.00------------------------------------------------------------------------------------------------------------------------1.00------------------
...AGCCACGACAGCACCGTCTGC..........................................................................................................................................................2111.001.00--------------------------------------------------------------------1.00----------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAGGA.....................................................................................2511.001.00-----------------------------------------------------------------------------------------------------------------------1.00-------------------
......................................................................................................CGTGACTCACAGCTCTCTCCC.......................................................2111.001.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAA.......................................................................................2411.007.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAGA...............................................2711.0013.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
..........................................................................AGGAGGTGAGTGCAGAGACG....................................................................................201.000.00---------------------------------------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................CCTCTGAAACACTACCACTGCT..............2211.001.00----------------------------------------------------------------------------1.00--------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGA.................................................2611.003.00--------1.00----------------------------------------------------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCTGGCTGATG................................................................................................................................................2411.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCA...................................................2511.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGAA................................................2711.003.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGT.................................................2411.004.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTT....................................................2411.004.00----------------------------------------------------------------------------------1.00--------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCATTA................................................2611.004.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................TCGCGACTCTGGCCTCTGAAACACTAC.....................2711.001.00------------------------------------------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAATCC.........................181.000.00-------------------------------------------------------------------------------------------------------------------1.00-----------------------
....................................................................................................................................GCGACTCTGGCCTCTGAAACAC........................2211.001.00------------------------------------------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................CACTACCACTGCTGGCGCTG.......2011.001.00---------------------------------------------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................CGCGACTCTGGCC..................................1330.670.67----------------------------------------------------------------------------------------------------------------------------------------0.330.33-
....................................................................CAGGGGAGGAGGTGAGT.............................................................................................1720.500.50--0.50----------------------------------------------------------------------------------------------------------------------------------------
.............................................................CCATCCCCAGGGGAGG.....................................................................................................1640.250.25------------------------------------------------------------------------------------------------------------------------------------------0.25
............................................................................................................TCACAGCTCTCTCCCCT.....................................................1740.250.25-----------------------------0.25-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GAAACACTACCACTG................1550.200.20------------------------------------------------------------0.20------------------------------------------------------------------------------

Antisense strand
GTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGAAGATGGCGTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCA
......................................................................((((.(((((.((((...(((..((((....))))..)))...)))))))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189787SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR038857(GSM458540)
D20. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR189783SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR038861(GSM458544)
MM466. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029127(GSM416756)
A549. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335SRR029128(GSM416757)
H520. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
..AAGCCACGACAGCACCGTCTGCCT........................................................................................................................................................ 2411.001.00--------------------------------------------------------------------------------------------------------------------------------1.00----------
...........................................................................................................CTCACAGCTCTCTCCCCTCAGCGTCC............................................. 261.000.00---------------------------------------------1.00---------------------------------------------------------------------------------------------
...............................................................................................................CAGCTCTCTCCCCTCAGCGTCGAG........................................... 241.000.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------
.............................TGATGCCGACAAGAAGAT................................................................................................................................... 1811.001.00-------------------------------1.00-----------------------------------------------------------------------------------------------------------
......CACGACAGCACCGTCTGC.......................................................................................................................................................... 1811.001.00------------------1.00------------------------------------------------------------------------------------------------------------------------