ID: uc003slx.1
GENE: EIF3B(1)
chr7:2402080-2402329+


(3)
AGO2.ip
(19)
B-CELL
(3)
BRAIN
(10)
BREAST
(33)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(4)
LIVER
(2)
OTHER
(13)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTGGTTAGGATTTCCCTGTCACTTAGGAGCTCCCTGGCTGTGGATCTGTCCCCCGTGTGACTGCCTTAGGCTCGAGGCAGGAAGAGCAGCACAGATACTCCTGGCACCGAGGGCTTGTCCGTGGAGAGGGGTGGGGCGGACAGCGCATACCTGCCTAGCCTTACAGTGTGGGTATGTGCCAACGGCCCTCTCTCACTCAGGTATATTTTCCTGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGA
...............................................................................................................................((((.(((.((....((((((((((((((........)).))))))))))))...)).))).)))).........................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189786SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577740(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR189787SRR038863(GSM458546)
MM603. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038860(GSM458543)
MM426. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189782SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCT...............................................................................................24199.0027.006.0010.007.007.002.003.00-3.005.00-3.002.005.004.001.001.004.001.003.00----2.00--1.00--2.002.002.002.00-1.001.00---1.001.001.00-2.001.00--1.00----1.001.00--1.00--1.00-1.001.00------1.00-1.00--1.001.00-1.00-1.00-------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGC................................................................................................23127.0027.003.003.002.002.001.001.00-----1.00---1.00-2.00-3.00-------1.001.00-----1.00-1.00----1.00-------------1.00-----------------1.00------1.00------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTG.................................................................................................22125.0025.005.002.001.00-4.001.00-2.00--2.002.00---1.00-----------1.00--------1.00---------1.00--------------------1.00----------------1.00--------
...................................................................................................................................TGGGGCGGACAGCGCATACCT..................................................................................................2119.009.00------3.00--------------3.00------1.00----------------------------------1.00--------1.00--------------------
............................................................................................................................................................AGCCTTACAGTGTGGGTATGTGCCAACGGCC...............................................................3115.005.00---------5.00-----------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGA................................................................................................2314.0025.001.00------1.00---------------------------1.00-1.00-------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACC...................................................................................................2014.004.00------3.00-------------------------------------------------------------------------------1.00------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCA...............................................................................................2414.0027.00----1.00--------1.00------------------------------1.00---------1.00--------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGT................................................................................................2314.0025.00----1.00---1.00----------------------------1.00-------------1.00-----------------------------------------
................................................................................................................................................................................................................................CCCTGCCCACGCTGTGGATGCT....2213.003.00--------------------3.00------------------------------------------------------------------------
...............................................................................................................................................................................................................TTCCTGGAGTACGCGTCCCCTGCCCACGC..............2912.002.00------------------------2.00--------------------------------------------------------------------
...............................................................................................................................................................................................................TTCCTGGAGTACGCGTCCCCTGCC...................2412.002.00--------------2.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TCCCCTGCCCACGCTGTGGA........2012.002.00-------------------------2.00-------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCCCAG............................................................................................272.000.00----------------------2.00----------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGAA...............................................................................................2412.0025.001.00----1.00---------------------------------------------------------------------------------------
.........................................................................................................ACCGAGGGCTTGTC...................................................................................................................................1441.251.25---0.75--------------------------------------------------------------------------------------0.250.25-
..................................................................................................................................GTGGGGCGGACAGCGCATACCTGCTA..............................................................................................261.000.00-----------------1.00---------------------------------------------------------------------------
.........................................................................................................................................................................GGGTATGTGCCAACGGCCCTCTC..........................................................2311.001.00------------------------------------------------------------1.00--------------------------------
...........................................................................GGCAGGAAGAGCAGCACACCTT.........................................................................................................................................................221.000.00------------------------------------------------------------------1.00--------------------------
...................................................................AGGCTCGAGGCAGGAAGAGCAGCA...............................................................................................................................................................2411.001.00---------------1.00-----------------------------------------------------------------------------
..........................................................................................................CCGAGGGCTTGTCCGCC...............................................................................................................................171.000.00----------------------------------------------------------------------1.00----------------------
...................................................................................................................................TGGGGCGGACAGCGCATACTTG.................................................................................................221.000.001.00--------------------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCTT..............................................................................................2511.0027.00-------------------------------------------------1.00-------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCTA..............................................................................................2511.0027.00----------------------------------------1.00----------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCTTT.............................................................................................2611.0027.00--------------------------------------------------1.00------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCCGCC...............................................................................................2411.004.00----------------------1.00----------------------------------------------------------------------
..............................................................................................................................................................................................................................TCCCCTGCCCACGCTGTGGCTGC.....231.000.00---------------------------------------------------------1.00-----------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCAGCT...............................................................................................2411.004.00-----1.00---------------------------------------------------------------------------------------
..................................................................................................................................GTGGGGCGGACAGCGCATA.....................................................................................................1911.001.00-----------------------1.00---------------------------------------------------------------------
............................................................................................................................................................................................................ATTTTCCTGGAGTACG..............................1621.001.00----------------------------------------------------------------------------1.00----------------
...................................................................................................................................TGGGGCGGACAGCGCATACCCGCT...............................................................................................2411.004.00--------------1.00------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCAT......................................................................................................1711.001.00---------------------------------------------------------------------------------------1.00-----
...................................................................................................................................TGGGGCGGACAGCGCATACCTTA................................................................................................2311.009.00------------------------------------------------1.00--------------------------------------------
....................................................................................................................................GGGGCGGACAGCGCATACCTGCT...............................................................................................2311.001.00--1.00------------------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCCGC................................................................................................2311.004.00---------------------------------------------1.00-----------------------------------------------
....................................................................................................................................GGGGCGGACAGCGCATACCTGC................................................................................................2211.001.00--------------1.00------------------------------------------------------------------------------
......................................................................................................................................................................................................................AGTACGCGTCCCCTGCCCACGCTGCGG.........271.000.00------------------------------------------------------------------------------1.00--------------
..........................................................................................................CCGAGGGCTTGTCC..................................................................................................................................1430.330.33-----------------------------------------------------------------------------------------0.33---
...................................................................................................................................................................CAGTGTGGGTATGTG........................................................................1590.110.11--------------------------------------------------------------------------------------------0.11

Antisense strand
CTGGTTAGGATTTCCCTGTCACTTAGGAGCTCCCTGGCTGTGGATCTGTCCCCCGTGTGACTGCCTTAGGCTCGAGGCAGGAAGAGCAGCACAGATACTCCTGGCACCGAGGGCTTGTCCGTGGAGAGGGGTGGGGCGGACAGCGCATACCTGCCTAGCCTTACAGTGTGGGTATGTGCCAACGGCCCTCTCTCACTCAGGTATATTTTCCTGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGA
...............................................................................................................................((((.(((.((....((((((((((((((........)).))))))))))))...)).))).)))).........................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189786SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577740(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR189787SRR038863(GSM458546)
MM603. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038860(GSM458543)
MM426. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189782SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................GCCTAGCCTTACAGTGTTT............................................................................... 192.000.00---------------------------------2.00-----------------------------------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGAGGT.............................................................................. 192.000.00--------------------------1.00-----------1.00------------------------------------------------------
........................................................................................................................................................GCCTAGCCTTACAGTGGAGC.............................................................................. 201.000.00----------------------------------------------------------1.00----------------------------------
...........................................................................................................................GAGAGGGGTGGGGCGGGCG............................................................................................................ 191.000.00---------------------------------------------------------------------------------1.00-----------
.........................................................................................................................................................CCTAGCCTTACAGTGTGTC.............................................................................. 191.000.00----------------------------------------------------------------1.00----------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGAGA............................................................................... 181.000.00------------------------------------------1.00--------------------------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGGGC............................................................................... 181.000.00------------------------------------------1.00--------------------------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGAGG............................................................................... 181.000.00--------------------------------------1.00------------------------------------------------------
.............................................CTGTCCCCCGTGTGAGGGG.......................................................................................................................................................................................... 191.000.00-----------------------------------------------------------------1.00---------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGGG................................................................................ 171.000.00--------------------------------------------------------------------1.00------------------------
...........................................................................................................................GAGAGGGGTGGGGCGGTCT............................................................................................................ 191.000.00----------------------------------------------------------------------------------1.00----------
.........................................................................................................................................................CCTAGCCTTACAGTGGA................................................................................ 171.000.00---------------------------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................................................CCCCTGCCCACGCTGTGGCCT...... 211.000.00-------------------------------------------------------------------------------------1.00-------
........................................................................................................................................................GCCTAGCCTTACAGTGGA................................................................................ 181.000.00-----------------------------------------------------------------------------------1.00---------
................................................................................................................GCTTGTCCGTGGAGA........................................................................................................................... 1530.330.33----------------------------------------------------------------------------------------0.33----