ID: uc003skn.2
GENE: INTS1(9)
chr7:1538140-1538392-


(3)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(6)
BREAST 		(28)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(7)
HEART 		(7)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(1)
XRN.ip

Sense strand
ATCCGCCTCAAGCCCAAGGTCCTCCTCAACCACTTCATGCTGTGCATCAGGTGCGTGGCGAGCCGGGGCAGAGCGGGGGTGCGGGTGGAGTGGGGGTGTGGGTGGGGGTGTGGGCGGAGCGGGGGTGCGGGCGGAGTGGGGGCACAGGCGGAGTGGGGGCACAGGCGTAGCGGGGACAGGGTCTGTACCCTCACCTCACCCAGGGAGCTGCTGAGCGCGCACAAGGACAACCTGGGCACCACCATCAAGTTGG
..........................................................................................................................(((((.....((.(((((((.((((((...(((....)))..((...)).........)))))).))))))))))))))....................................................
..........................................................................................................................123.............................................................................203................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189786SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577589(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		GSM532872(GSM532872)
G652T. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037931(GSM510469)
293GFP. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCAG..................................................22133.0033.008.00--1.00-3.001.002.003.001.002.00-3.00--1.001.00-1.00-2.00-------1.00----------------------------1.00---------1.00---1.00-------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCAGT.................................................23126.0033.005.00-4.002.001.00----1.001.00---1.00--------1.00---1.00-1.00--1.00---1.001.00--------1.00--1.00-----1.00------1.00------1.00---------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCA...................................................21117.0017.001.008.00-----1.002.00----1.00----------2.00-----------------------------------1.00---1.00--------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCAGA.................................................23111.0033.00---3.00--------1.00-1.002.001.00-1.00-------1.00-----------------------1.00----------------------------
......................................................................................................................................................................................CTGTACCCTCACCTCACCCAGT.................................................228.000.00--2.00--1.00----1.00-----1.00--------------1.00---------1.00-------------------1.00-----------------
...............................................................................................................................CGGGCGGAGTGGGGGCACAGGC........................................................................................................2215.005.00---------1.00-3.00-----------1.00-------------------------------------------------------
........................................................................................................................................................................................GTACCCTCACCTCACCCAGA.................................................204.000.00----4.00--------------------------------------------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCC....................................................2013.003.00-------------1.00-------------------------------1.00-1.00-------------------------------
.............................................................................................................................TGCGGGCGGAGTGGGGGCACAGGC........................................................................................................2412.002.00----1.00------------------------------------------------------------1.00-------------
...............................................................................................................................CGGGCGGAGTGGGGGCACAGGT........................................................................................................222.000.00---------------------------------1.00------------------------------------1.00--------
..............................................................................................................................................................................................................................AAGGACAACCTGGGCAC..............1712.002.00-------1.00--------------------------------------------1.00--------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCAGTT................................................2412.0033.00---------------------2.00---------------------------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCA.......................................................1712.002.001.00--------------------------------------1.00---------------------------------------
.............................................................................................................................TGCGGGCGGAGTGGGGGCAC............................................................................................................2011.001.00----------------------1.00--------------------------------------------------------
........................................................................................................................................................................................................CAGGGAGCTGCTGAGCGCGCACAAGG...........................2611.001.00-----------------------------------1.00-------------------------------------------
...................................CATGCTGTGCATCAGGGAGC......................................................................................................................................................................................................201.000.00---------------------------------------------------------------------------1.00---
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCTAG..................................................2211.001.001.00------------------------------------------------------------------------------
...................................................................................................................GGAGCGGGGGTGCGGGCGCTC.....................................................................................................................211.000.00---------------------------------------------------1.00---------------------------
................................................................................................................................................................................................................................GGACAACCTGGGCACCGTTC.........201.000.00-------------------------1.00-----------------------------------------------------
....................................................................................................................................................................................GTCTGTACCCTCACCTCCC......................................................191.000.00------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCATT.................................................2311.0017.00-----------1.00-------------------------------------------------------------------
...............................................................................................................................CGGGCGGAGTGGGGGCAG............................................................................................................181.000.00-----------------1.00-------------------------------------------------------------
................................................................................................................................................CAGGCGGAGTGGGGGCACACGCG......................................................................................231.000.00--------------------------------------1.00----------------------------------------
.........................................................................................................................................................................................................AGGGAGCTGCTGAGCGCGCACAA.............................2311.001.00-------------------1.00-----------------------------------------------------------
.........................................................................................................................................................................................................AGGGAGCTGCTGAGCGCGCACAAGGACCA.......................291.000.00-----1.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................AGGGAGCTGCTGAGCGGGG.................................191.000.00----------------------------------1.00--------------------------------------------
..........................................................................GGGGGTGCGGGTGGAAA..................................................................................................................................................................171.000.00-------------------------1.00-----------------------------------------------------
.......................................................................................................................................................................................TGTACCCTCACCTCACCCAGT.................................................211.000.00-----------------------------------------------------1.00-------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCCGT.................................................2311.003.00----------------------------------------------------------1.00--------------------
.................................................................................................................................................AGGCGGAGTGGGGGCACAGGCGA.....................................................................................2311.001.00-----------------------------------------------------------1.00-------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCAGC.................................................2311.0033.00-------------1.00-----------------------------------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACC.....................................................1911.001.00----------------------1.00--------------------------------------------------------
....................................................................................................................................................................................GTCTGTACCCTCACCG.........................................................161.000.00------1.00------------------------------------------------------------------------
....................................................................................................................................................................................................................GAGCGCGCACAAGGACAACCTGGGCACC.............2811.001.00-------------------1.00-----------------------------------------------------------
.................................................................................................................................................AGGCGGAGTGGGGGCACAGGCG......................................................................................2211.001.00--------------------------------------------1.00----------------------------------
...................................................................................................................................................................................................................................CAACCTGGGCACCACCATCAAGT...2311.001.00--------------------------------------------------------------------------1.00----
.........................................................................................................................................................................................................AGGGAGCTGCTGAGCGCGCACAAGGA..........................2611.001.00--1.00----------------------------------------------------------------------------
.......................................................................................................................................................................................TGTACCCTCACCTCACCCAGAT................................................221.000.00------------------------------------------------1.00------------------------------
...............................................................................................................................CGGGCGGAGTGGGGGCACAGGAT.......................................................................................................231.000.00----------------------------------------1.00--------------------------------------
...............................................................................................................................CGGGCGGAGTGGGGGCACAGGCT.......................................................................................................2311.005.00---------1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................AGGGAGCTGCTGAGCGC...................................1711.001.00-------------------------------------------------------------------------1.00-----
...............................................................................................................................................................CACAGGCGTAGCGGGTTT............................................................................181.000.001.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................................AAGGACAACCTGGGCACCACC..........2111.001.00-------1.00-----------------------------------------------------------------------
................................................................................................................................................CAGGCGGAGTGGGGGCCCAG.........................................................................................201.000.00--------------------------------------------------------1.00----------------------
...............................................................................................................................CGGGCGGAGTGGGGGCACAGGCATC.....................................................................................................2511.005.00------------------------------------------1.00------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCAA..................................................2211.0017.00--------------1.00----------------------------------------------------------------
.................................................................................................................................................AGGCGGAGTGGGGGCACAG.........................................................................................1911.001.00------------------------------1.00------------------------------------------------
.........................................................................................................GGGTGTGGGCGGAGCAG...................................................................................................................................171.000.00--------------------------------------------------------------------1.00----------
....................................................................................................................................................................................GTCTGTACCCTCACCT.........................................................1611.001.00------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCACCCG...................................................2111.003.00-----1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................TCTGTACCCTCACCTCATCCA...................................................2111.002.00------------------------------------------------------------------1.00------------
....................................................................................................................................................................................GTCTGTACCCTCACCTTT.......................................................1811.001.00------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................GCACAAGGACAACCTGG..................1720.500.50----------------------------------------------------------------------------0.50--
...........................................................................................................................................................................................CCCTCACCTCACCCAG..................................................1690.330.33---------------------------0.33---------------------------------------------------
.................................................................................................................................................................CAGGCGTAGCGGG...............................................................................1330.330.33--------------------------0.33----------------------------------------------------
.......................................................................................GAGTGGGGGTGTGGGTG.....................................................................................................................................................1790.110.11-----------------------------------------------------------------------------0.11-
.....................................................................................................................................................................................TCTGTACCCTCACCT.........................................................15110.090.09------0.09------------------------------------------------------------------------

Antisense strand
ATCCGCCTCAAGCCCAAGGTCCTCCTCAACCACTTCATGCTGTGCATCAGGTGCGTGGCGAGCCGGGGCAGAGCGGGGGTGCGGGTGGAGTGGGGGTGTGGGTGGGGGTGTGGGCGGAGCGGGGGTGCGGGCGGAGTGGGGGCACAGGCGGAGTGGGGGCACAGGCGTAGCGGGGACAGGGTCTGTACCCTCACCTCACCCAGGGAGCTGCTGAGCGCGCACAAGGACAACCTGGGCACCACCATCAAGTTGG
..........................................................................................................................(((((.....((.(((((((.((((((...(((....)))..((...)).........)))))).))))))))))))))....................................................
..........................................................................................................................123.............................................................................203................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189786SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577589(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		GSM532872(GSM532872)
G652T. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037931(GSM510469)
293GFP. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335
..........AGCCCAAGGTCCTCCTGG................................................................................................................................................................................................................................. 181.000.00-----------------1.00-------------------------------------------------------------
.................................................................GGGCAGAGCGGGGGTGCG.......................................................................................................................................................................... 1811.001.00------------------------------------------------------------------------1.00------
..........................................................................................TGGGGGTGTGGGTGGGGGTGGT............................................................................................................................................. 221.000.00------------------------------------------------------1.00------------------------
.............................................................................................................................................................GGCACAGGCGTAGCGACC.............................................................................. 181.000.00---------------------------------------------------------------1.00---------------
.................................................................................................GTGGGTGGGGGTGTGGGGCAA....................................................................................................................................... 211.000.00-------------------------------------------1.00-----------------------------------
....................................................................................................................................................................................GTCTGTACCCTCACC.......................................................... 1530.330.33------0.33------------------------------------------------------------------------
.................................................GGTGCGTGGCGAG............................................................................................................................................................................................... 1390.110.11------------------------------------------------------------------------------0.11
.......................................................TGGCGAGCCGGGG......................................................................................................................................................................................... 1390.110.11----------------------------0.11--------------------------------------------------