ID: uc003mhh.2
GENE: DOK3(2)
chr5:176932062-176932311-


(1)
AGO1.ip
(4)
AGO2.ip
(2)
AGO3.ip
(6)
B-CELL
(2)
BRAIN
(6)
BREAST
(22)
CELL-LINE
(1)
FIBROBLAST
(2)
HEART
(3)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(17)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GCCCAGCACTCTCAGTGGGGAGCCAGGTGGGAGAACAGGCTCGGAAGGGGACCTAGGCTTATGCAGCGAGCCGGGCAAAGCTGGAACTGGAGCCCAGGCCCCTGGATGCCCCCTGGCTTGTGGAGTTCTGGGATACTGAGGGGAGGGGACAGGGCATGGGAGTGCGGTGCTCTCACCTTTGACTTGAACTCATTCCCCAGGGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAG
............................................................................................................................................(((((((..((((.((.(((((.((...)).))).))..)).))))..)))..)))).....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGT.................................................24142.0014.004.001.002.004.001.00-3.002.002.002.00-3.001.00-1.001.002.00--1.00--1.00-------1.00--1.00-1.00-1.00-1.00----1.00---1.001.00---1.00-1.00--1.00------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGT.................................................23116.0010.00-1.004.00-1.00------1.00--1.00----1.00--------------1.00-------1.00--1.00-1.00--1.00----------1.00---1.00-----
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAG..................................................23114.0014.00-2.003.00---1.00-----2.00---1.001.00-----1.00-------1.00--------1.00-------------------1.00----------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAG..................................................22110.0010.007.003.00---------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGA.................................................2318.0010.00----1.001.00---1.00--1.00--1.00-1.00-------------------------1.00----------1.00----------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGGCTA.................................208.000.00-----3.00-------------------1.00----------1.00----1.00---------1.00--------------1.00----
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGA.................................................2415.0014.00---1.00--------------1.00-------------1.00-----------------------1.00-----------1.00--
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGAA................................................2415.0010.00-------------2.00-1.00-----2.00-------------------------------------------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGGC...................................184.000.00----1.00-------------------1.00-1.00-------------------------------------1.00------
..............................GAGAACAGGCTCGGAAG...........................................................................................................................................................................................................1714.004.00----------4.00------------------------------------------------------------
......................................GCTCGGAAGGGGACCTAGGCTTATGCA.........................................................................................................................................................................................2713.003.00-------3.00---------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAT..................................................2312.001.00---------------------------1.00-----------------------------------1.00-------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGG.................................................2312.002.00-1.001.00--------------------------------------------------------------------
............................................................................................................................................................................TCACCTTTGACTTGATCC............................................................182.000.002.00----------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGTA................................................2412.0010.00---1.00-----1.00-------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGAAC...............................................2611.0014.00-----------------------------1.00-----------------------------------------
.................................................................................................................................................................GTGCGGTGCTCTCACATTA......................................................................191.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAA..................................................2211.001.00------1.00----------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCA...................................................2111.001.00----------------------------------------------1.00------------------------
..........................................................................................................................................AGGGGAGGGGACAGGGCATGGG..........................................................................................2211.001.00-------------1.00---------------------------------------------------------
...................................................................................................................GCTTGTGGAGTTCTGCGG.....................................................................................................................181.000.00----------------------------------------------------1.00------------------
...................................................................................................................................................................................TGACTTGAACTCATTCCCCAGAGAA..............................................251.000.00----------------------------1.00------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAAT.................................................2311.001.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCC....................................................2111.001.00--------------------------------------------------------------1.00--------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAA..................................................2311.001.00------------------1.00----------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGTA................................................2511.0014.00--------------------------------------1.00--------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCTAA..................................................231.000.00--------1.00--------------------------------------------------------------
.........................................................................................................................................GAGGGGAGGGGACAGGGCAGGGG..........................................................................................231.000.00-----1.00-----------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCA...................................................2211.001.00--------------1.00--------------------------------------------------------
.................................................................................................................................................GGGACAGGGCATGGGAGGCAG....................................................................................211.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................TGCGGTGCTCTCACCGCCG.....................................................................191.000.00-------------------------------------------------------------------1.00---
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGTAG...............................................2511.0010.00--------------------1.00--------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCC....................................................2011.001.00----1.00------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAT..................................................2211.001.00--------------------1.00--------------------------------------------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGCCTA.................................201.000.00----1.00------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAAG.................................................2311.001.00---1.00-------------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGC.................................................2411.0014.00--------1.00--------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCATT.................................................2311.001.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGAGT...............................................2511.0010.00--1.00--------------------------------------------------------------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGC....................................1760.670.67---------------------------------------------------------------------0.500.17

Antisense strand
GCCCAGCACTCTCAGTGGGGAGCCAGGTGGGAGAACAGGCTCGGAAGGGGACCTAGGCTTATGCAGCGAGCCGGGCAAAGCTGGAACTGGAGCCCAGGCCCCTGGATGCCCCCTGGCTTGTGGAGTTCTGGGATACTGAGGGGAGGGGACAGGGCATGGGAGTGCGGTGCTCTCACCTTTGACTTGAACTCATTCCCCAGGGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAG
............................................................................................................................................(((((((..((((.((.(((((.((...)).))).))..)).))))..)))..)))).....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................GAGTTCTGGGATACTGTG.............................................................................................................. 181.000.00---------------------------------------------------------1.00-------------
.........................................................................................................................................................................................GAACTCATTCCCCAGTGAT.............................................. 191.000.00-----------------------------------------------------------1.00-----------
............................GGGAGAACAGGCTCGGATCTT......................................................................................................................................................................................................... 211.000.00--------1.00--------------------------------------------------------------