ID: uc003bmk.7
GENE: CPT1B(7)
chr22:51010502-51010681-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(23)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(9)
HEART 		(3)
HELA 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
ATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGGTAATAGCCTTGCAGAGGGAACCTGCAGGGCAGGCTGTAGGGGATGAGGCCAGCCTCTCAGTCTCATCCTCTCCCTGCAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCA
........................................................................((((((((........((((((((((((..........))))))))))))))))))))..................................................
.......................................................................72..............................................................136..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189782SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR038860(GSM458543)
MM426. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189786SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040014(GSM532899)
G623N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
...............................................................................................................TCTCATCCTCTCCCTGCAGTT................................................21140.0040.0011.004.004.002.00-2.002.002.001.00-1.00---2.00---1.001.00--1.00-1.00--------------------1.001.00------1.001.001.00----------
............................................................................AGGGCAGGCTGTAGGGGATGAGGC................................................................................24118.0018.002.001.003.002.001.00---2.002.00-----------1.00-1.00----1.00---1.00------------------------1.00--------
...............................................................................................................TCTCATCCTCTCCCTGCAGT.................................................20211.0011.00-1.501.000.50---1.50--0.500.50-1.50---2.000.50---------------------------------------0.50-0.50-0.50---
...............................................................................................................TCTCATCCTCTCCCTGCAGTTT...............................................22110.0010.002.00-3.001.00-1.001.00---1.00------------------1.00------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCC...............................................................................2515.005.00----2.00----------2.00---------1.00----------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTAT...............................................2225.0011.003.500.500.500.50--------------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGG.................................................................................2314.004.00----1.00---------------------1.00--------1.00-----1.00------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCC...............................................................................2313.003.00-----------1.00---------------------1.00------------------1.00-------------
............................................................................AGGGCAGGCTGTAGGGGATGAG..................................................................................2212.002.00---------1.00--------------------------------1.00-----------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGC................................................................................2212.002.00-1.00---------1.00------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTTAT..............................................2312.0040.00-1.00---1.00------------------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGC................................................................................2312.002.00-----------1.00------------------1.00-----------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGA.................................................................................2312.002.00-1.00-1.00--------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGG.................................................................................2112.002.00----1.00-------1.00-----------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAG..................................................................................2112.002.00------1.00---1.00-------------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAAA.................................................................................221.000.00--------1.00---------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCAAT.............................................................................2511.002.00-------1.00----------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAG..................................................1921.001.00-------------0.50---------------------------------------------------0.50
...............................................................................GCAGGCTGTAGGGGATGAGGC................................................................................2111.001.00-----------------------------------------------1.00------------------
.................................................................................................................TCATCCTCTCCCTGCAGTT................................................1911.001.00--1.00---------------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCT...............................................................................2511.0018.00-1.00----------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCTAT.............................................................................2511.002.00------------------------------------1.00-----------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGATT..............................................................................2611.004.00--------------------------------------------------------1.00---------
.........................................................................TGCAGGGCAGGCTGTAGGGGATGA...................................................................................2411.001.00------------1.00-----------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGAAT...............................................................................2511.002.00--------------------1.00---------------------------------------------
.................................................................................................................................GTTTGTCCTGGGCACAGACAGC.............................2211.001.00----------------------------------------1.00-------------------------
......................................................................................GTAGGGGATGAGGCCAGCCTCAA.......................................................................231.000.00----------------1.00-------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGCC...............................................................................2411.001.00---------------------------1.00--------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATAA...................................................................................211.000.00--------------------------------------------------1.00---------------
.....................................................................AACCTGCAGGGCAGGCTGTAGGGGATGAA..................................................................................291.000.00------------1.00-----------------------------------------------------
...............................................................................GCAGGCTGTAGGGGATGAGGCCAGCC...........................................................................2611.001.00--------------------------------------1.00---------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCAA..............................................................................2411.002.00----1.00-------------------------------------------------------------
..........................................................CTTGCAGAGGGAACCTGAA.......................................................................................................191.000.00---------------------------------------------------1.00--------------
.................................TTGGGCACCTCTGGGAG..................................................................................................................................1711.001.00----------------------------------1.00-------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCCGTT................................................211.000.00----------------1.00-------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGCA...............................................................................2511.0018.00-1.00----------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGGCA...............................................................................2311.002.00-------------------------------------------1.00----------------------
................................................................................CAGGCTGTAGGGGATGAGACTC..............................................................................221.000.00-------------------------------1.00----------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTTAA..............................................2311.0040.00-1.00----------------------------------------------------------------
.............................................................................GGGCAGGCTGTAGGGGATGAGGCCA..............................................................................2511.001.00---------1.00--------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTA................................................2121.0011.00-0.50----0.50-----------------------------------------------------------
............................................................................AGGGCAGGCTGTAGGGGATGAGGA................................................................................2411.004.00-----1.00------------------------------------------------------------
..............................................................................GGCAGGCTGTAGGGGATGAGA.................................................................................211.000.00-1.00----------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGAATT..............................................2320.501.00---------------------------------------------------------------0.50--
....AGAGCATGCGTGGGC.................................................................................................................................................................1520.500.50-------------0.50----------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTGAA..............................................2320.5011.00-------------------------------------------------------------0.50----
...............................................................................................................TCTCATCCTCTCCCTGCATTT................................................2120.500.50--0.50---------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGTAA...............................................2220.5011.00----------------------------------------------------------------0.50-
...............................................................................................................TCTCATCCTCTCCCTGCAGAT................................................2120.501.00---0.50--------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGGTA...............................................2220.501.00-0.50----------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCA...................................................1820.500.50---0.50--------------------------------------------------------------
...............................................................................................................TCTCATCCTCTCCCTGCAGCT................................................2120.501.00-----------------------------------------------------------0.50------
...............................................................................................................TCTCATCCTCTCCCTGCAAA.................................................2020.500.50-------------0.50----------------------------------------------------

Antisense strand
ATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGGTAATAGCCTTGCAGAGGGAACCTGCAGGGCAGGCTGTAGGGGATGAGGCCAGCCTCTCAGTCTCATCCTCTCCCTGCAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCA
........................................................................((((((((........((((((((((((..........))))))))))))))))))))..................................................
.......................................................................72..............................................................136..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189782SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR038860(GSM458543)
MM426. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189786SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040014(GSM532899)
G623N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
..............................................................CAGAGGGAACCTGCAGTAT................................................................................................... 192.000.00-------------------------------------1.00------1.00---------------------
...............................................................................................................................................CAGACAGCTTCCACCTGG................... 1811.001.00---------------------------------------1.00--------------------------
..................................................................................................GCCAGCCTCTCAGTCTCAT............................................................... 1911.001.00-----1.00------------------------------------------------------------
..........................................................................................GGGATGAGGCCAGCCTCTGGCT.................................................................... 221.000.00------------------------------------------------1.00-----------------
...............................................................................................................TCTCATCCTCTCCCTGCC................................................... 181.000.00-------------------------------------------------1.00----------------
..................................................................................GGCTGTAGGGGATGAG.................................................................................. 1650.200.20---0.20--------------------------------------------------------------