ID: uc003bmk.3
GENE: CPT1B(1)
chr22:51007801-51008054-


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(4)
AGO2.ip
(4)
B-CELL
(3)
BRAIN
(7)
BREAST
(17)
CELL-LINE
(2)
CERVIX
(7)
HEART
(4)
HELA
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(20)
SKIN
(1)
TESTES

Sense strand
AGAACACGATCTTCTTCCACATCTCCAGCAAGTTCTCAAGCTCAGAGACGGTGAGTCTCCTGCCACAGCTCAGGCCTGAGGAAGGGGTGCCACCTGGGGCTGCCCAGGAACACAGGTGTCTTTGGCTGGGGAGGCATCCTTGCTTGTGGGAACAGAGGGGTGGGTACATATCTGAAGGTGCATCTGAACTCTTGGCTCCCACAGAACGCCCAGCGCTTTGGAAACCACATCCGCAAAGCCCTGCTGGACATTGC
....................................................................((((....))))..(((((((((.((((((....))))))....(((.((....)).)))....)))))))))...(((((((...(((((..((((.(((........))).))))...)))))...)))))))...................................................
....................................................................69.....................................................................................................................................204................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR029129(GSM416758)
SW480. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038860(GSM458543)
MM426. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACAGT.................................................23132.006.008.003.005.00-2.00------1.00--------1.00----1.00--1.00-1.00---1.00----------------1.00-----1.00-1.00-1.001.00-1.00-1.001.00----
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACAGT.................................................22114.004.006.001.00--------1.00--------1.00------------1.00--1.001.00-------1.00-------------1.00-------------
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACAGA.................................................2318.008.00-----1.00-----1.002.001.00-------1.00-----------1.00------------1.00-------------------------
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACAG..................................................2216.006.00-------------1.00---------1.00---------------1.00-1.00-------1.00----1.00-----------------
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACA...................................................2115.005.00-------3.00-1.00-----------------------------------------------------1.00--------
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACAGA.................................................2214.004.00--------1.00-----1.00------------1.00----------------------1.00---------------------
.....................................................................................................................................................................................ATCTGAACTCTTGGCTCCCACAG..................................................2314.004.00---4.00--------------------------------------------------------------------
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACAG..................................................2114.004.00-1.00--1.00-1.00------------------------1.00----------------------------------------
......CGATCTTCTTCCACATCTCCAGC.................................................................................................................................................................................................................................2311.001.00-----1.00------------------------------------------------------------------
.................................................................................................................................................................................................................CCAGCGCTTTGGAAAAAA...........................181.000.00--------1.00---------------------------------------------------------------
..................................................................................................................................................................GGTACATATCTGAAGGTGCATCTGAA..................................................................2611.001.00-------------------------------------1.00----------------------------------
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACAGTTT...............................................2411.004.001.00-----------------------------------------------------------------------
.........................................................................GCCTGAGGAAGGGGTGCTGGA................................................................................................................................................................211.000.00--------------------------------------------------------1.00---------------
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACCGT.................................................231.000.00--1.00---------------------------------------------------------------------
.......................................................................................................................................................................................................................CTTTGGAAACCACATCCGCAAAGC...............2411.001.00---------------1.00--------------------------------------------------------
...............................................................................................................................................TTGTGGGAACAGAGGGGTGGAA.........................................................................................221.000.00------------------------------------------------------------1.00-----------
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACAGTTA...............................................2511.006.00-1.00----------------------------------------------------------------------
...........................................................................................................................................................................................................GAACGCCCAGCGCTTTGGAAACC............................2311.001.00---------1.00--------------------------------------------------------------
......................................................................................................................................................................................................................................CCGCAAAGCCCTGCTATT......181.000.00-----------------------------------------------------1.00------------------
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACT...................................................201.000.00----------------------------------------1.00-------------------------------
...........................................................................................................................................................................................ACTCTTGGCTCCCACAGC.................................................181.000.00-----------------------------------------------1.00------------------------
.............................................................................................................................................................................................................................AAACCACATCCGCAAAGC...............1811.001.00---------1.00--------------------------------------------------------------
................................................................................................................................................................................GGTGCATCTGAACTCTG.............................................................171.000.00-----------------1.00------------------------------------------------------
...................................................................................................................................................................................................................AGCGCTTTGGAAACCACATCCCCAA..................251.000.00--------------------------1.00---------------------------------------------
.............................................................................................................................................................................................................................AAACCACATCCGCAATCG...............181.000.00------1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................ACATCCGCAAAGCCCTGCTG........2011.001.00-----1.00------------------------------------------------------------------
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACAGTT................................................2311.004.00------------------------------------------1.00-----------------------------
...........................GCAAGTTCTCAAGCTCAGAGACGAACG........................................................................................................................................................................................................271.000.00---------------1.00--------------------------------------------------------
...........................................................................................................................................................................................................GAACGCCCAGCGCTTTG..................................1711.001.00----------------1.00-------------------------------------------------------
.......................................................................................................................CTTTGGCTGGGGAGGCGGTC...................................................................................................................201.000.00------1.00-----------------------------------------------------------------
......................................................................................................................................................................................TCTGAACTCTTGGCTCCCACAGC.................................................2311.006.00----------1.00-------------------------------------------------------------
........................................................................................................................................................................................TGAACTCTTGGCTCCCACAGT.................................................211.000.00----------------1.00-------------------------------------------------------
...............................................................................................................................................TTGTGGGAACAGAGGGGTGGT..........................................................................................211.000.00--------------1.00---------------------------------------------------------
...............................................................................................................................................TTGTGGGAACAGAGGGGTGGGTAT.......................................................................................241.000.00-------------------------------------------------------1.00----------------
.......................................................................................................................................................................................CTGAACTCTTGGCTCCCACAGAA................................................2311.001.00------------------------------------------------1.00-----------------------
..AACACGATCTTCTTCC............................................................................................................................................................................................................................................1620.500.50----------------------------------------------------------------------0.50-
....................................................................................................................................................................TACATATCTGAAGGTG..........................................................................1630.330.33------------------0.33-----------------------------------------------------

Antisense strand
AGAACACGATCTTCTTCCACATCTCCAGCAAGTTCTCAAGCTCAGAGACGGTGAGTCTCCTGCCACAGCTCAGGCCTGAGGAAGGGGTGCCACCTGGGGCTGCCCAGGAACACAGGTGTCTTTGGCTGGGGAGGCATCCTTGCTTGTGGGAACAGAGGGGTGGGTACATATCTGAAGGTGCATCTGAACTCTTGGCTCCCACAGAACGCCCAGCGCTTTGGAAACCACATCCGCAAAGCCCTGCTGGACATTGC
....................................................................((((....))))..(((((((((.((((((....))))))....(((.((....)).)))....)))))))))...(((((((...(((((..((((.(((........))).))))...)))))...)))))))...................................................
....................................................................69.....................................................................................................................................204................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR029129(GSM416758)
SW480. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038860(GSM458543)
MM426. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................GGGCTGCCCAGGAACACAGG.......................................................................................................................................... 2011.001.00--------1.00---------------------------------------------------------------
..AACACGATCTTCTTCCACATCTCCAG.................................................................................................................................................................................................................................. 2611.001.00--------------------------------------1.00---------------------------------
.............................................................................................................................................................................................................ACGCCCAGCGCTTTGGC................................ 171.000.00-----------------1.00------------------------------------------------------
...ACACGATCTTCTTCCACAAGCT..................................................................................................................................................................................................................................... 221.000.00---------------------------------------------1.00--------------------------
.............CTTCCACATCTCCAGCAAGTTCTCA........................................................................................................................................................................................................................ 2511.001.00------------------1.00-----------------------------------------------------
.....ACGATCTTCTTCCACAATAA..................................................................................................................................................................................................................................... 201.000.00-1.00----------------------------------------------------------------------
.......................................................................................................................................................ACAGAGGGGTGGGTACAC..................................................................................... 181.000.00-----------------------------------------------------------------1.00------
.....................TCTCCAGCAAGTTCTCCCAT..................................................................................................................................................................................................................... 201.000.00-----------------------------1.00------------------------------------------
......CGATCTTCTTCCACATCTCCAGCGG............................................................................................................................................................................................................................... 2511.000.00----------------------1.00-------------------------------------------------
....CACGATCTTCTTCCACATCTCCAGCAA............................................................................................................................................................................................................................... 2711.001.00-------------------------------------------1.00----------------------------
..................................................................................................................................................................................................................CAGCGCTTTGGAAACTTAT......................... 191.000.00------------------------1.00-----------------------------------------------
..........CTTCTTCCACATCTCCAGCAAGTTCTCAAGCTC................................................................................................................................................................................................................... 3311.001.00----------------------------------------------------1.00-------------------
.................................................................................................................................................................................................................CCAGCGCTTTGGAAAC............................. 1620.500.50--------------------------------------------------------------------0.50---
.......GATCTTCTTCCACATCT...................................................................................................................................................................................................................................... 1720.500.50---------------------------------------------------------------------0.50--
............TCTTCCACATCTCCAG.................................................................................................................................................................................................................................. 1680.250.25-------------------0.12---------------------------------------------------0.12