ID: uc003bdd.4
GENE: ARFGAP3(4)
chr22:43206901-43207150-


(1)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(8)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGGGCAAGGTTGAACACAGGTACTTGAAAGGCCTTGGAAATGACACACCTCGTGTCTGCTCCTGTCTCATTGGCTAGACCTAGTTATGTGACTGCCATTAACTTCAAGGAGGCATCCCCCACATCTGTGGAAGTGAGAGAGCCCAGGACGAGTGTCAACAAGGACCTCCAAAGTCACTGTTGTACTCTTGCTCCTACAGTTACTTTGACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCTCTAGCTGGG
.................................................................................................................................................((((((((.(((((((..(((.......)))..))))).)).)))).))))......................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR343335SRR038858(GSM458541)
MEL202. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577579(Rovira)
total RNA. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577739(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................CAGGACGAGTGTCAACAAGGAC....................................................................................22145.0045.0039.001.00------2.002.00------------------------1.00--------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGA.....................................................................................21118.0018.008.002.00---2.00----------1.00-----------1.00---------1.001.00-----------------1.00----1.00----
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTACA...................................................2318.008.005.00---2.00---------------------1.00----------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGA.....................................................................................2216.006.001.001.00----------------1.00---------------------1.00-------1.00-----------1.00------
..............................................................................................................................................CCCAGGACGAGTGTCAACAAGG......................................................................................2216.006.006.00------------------------------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGAA....................................................................................2215.0018.00----1.00-2.00------------1.00-1.00---------------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTA.....................................................2314.004.00---------------1.00----1.00----------------1.00----------------1.00------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGACA...................................................................................2314.0045.003.00------------------------1.00-----------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAG.......................................................................................1913.003.00--3.00----------------------------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAG.......................................................................................2013.003.00---3.00---------------------------------------------------------------
.............................................................................................................................................................................................................TTGACGAGCCAGTGGA.............................1612.002.00-------2.00-----------------------------------------------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTAC....................................................2212.002.00--------------1.00----------------------------------1.00-----------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTACA...................................................2412.002.00------------------------------1.00------------------------------1.00-----
........................................................................................................................................................................................................................GTGGAGTTAAGGAGCAGTT...............1911.001.00-------------------------------------------------------1.00-----------
.............................................................................................................................................................................................................TTGACGAGCCAGTGGAGTTA.........................2011.001.00----------------------------------------------------------1.00--------
................................................................................................................................................................................................................ACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCT.........3311.001.00----------------------1.00--------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGAAAG..................................................................................2511.006.00-----------------------1.00-------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGAC....................................................................................2311.001.00----------1.00--------------------------------------------------------
.......................................AATGACACACCTCGTTG..................................................................................................................................................................................................171.000.00--1.00----------------------------------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTACAGG.................................................261.000.00--------------------------------------------------1.00----------------
................................................................................................................................................CAGGACGAGTGTCAACAAGG......................................................................................2011.001.00-----------------------------------1.00-------------------------------
.........................................................................................................................ACATCTGTGGAAGTGTGGT..............................................................................................................191.000.00----------------------------------------------1.00--------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGACT...................................................................................2311.0045.00-----1.00-------------------------------------------------------------
......................................................................................................................................................................................................................CAGTGGAGTTAAGGAGC...................1711.001.00-----------------------------------------------------------1.00-------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTAC....................................................2311.001.00------------------------------------------1.00------------------------
........................................................................................................................................................................CCAAAGTCACTGTTGTACTCTTGCTCCTACAG..................................................3211.001.00-------------1.00-----------------------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTAA....................................................2411.004.00-----------------------------------------------------1.00-------------
.....................................................................................................................................................................CCTCCAAAGTCACTGTTGTA.................................................................2011.001.00---------------------------------------------------1.00---------------
................................................................................................................................................CAGGACGAGTGTCAACAA........................................................................................1811.001.00------------1.00------------------------------------------------------
..........................................................................................................................................................................................................................GGAGTTAAGGAGCAGT................1611.001.00-----------------1.00-------------------------------------------------
.........................................................................................................................................................................................................TACTTTGACGAGCCAGTGGAGTTAA........................2511.001.00------------------------1.00------------------------------------------
...............................................................................................................................................................................................................GACGAGCCAGTGGAGTTA.........................1811.001.00------------------------------------1.00------------------------------
......................................................................................................................................................................................................................CAGTGGAGTTAAGGAGCA..................1811.001.00-----------1.00-------------------------------------------------------
...................................................................................................................................................................................................................................GAGCAGTTCTTTCTCTAG.....1811.001.00-----------------------------------------1.00-------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGG......................................................................................2111.001.00-------------------------------------------1.00-----------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTACAGC.................................................251.000.001.00------------------------------------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTTT....................................................2411.001.00-----------------------------------------------1.00-------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTA.....................................................2211.001.00---------------------------------1.00---------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCT......................................................2111.001.00--------------------------------------------1.00----------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCT......................................................2011.001.00--------------------------------1.00----------------------------------
...................................................CGTGTCTGCTCCTGTCGCC....................................................................................................................................................................................191.000.00---------------------------------------------1.00---------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCT......................................................2211.001.00--------------------------------------------------------1.00----------
................................................................................................................................................................................................................ACGAGCCAGTGGAGTTAAG.......................1911.001.00-------------------------------1.00-----------------------------------
..............................................................................................................................................................ACAAGGACCTCCAAAGTCACTG......................................................................2211.001.00-----------------------------1.00-------------------------------------
...........TGAACACAGGTACTT................................................................................................................................................................................................................................1560.330.33----------------------------------------------------------------0.33--
...............................................................................................................................................................................CACTGTTGTACTCTTG...........................................................1630.330.33---------------------------------------------------------------0.33---
..........TTGAACACAGGTACT.................................................................................................................................................................................................................................1580.120.12-----------------------------------------------------------------0.12-

Antisense strand
CTGGGCAAGGTTGAACACAGGTACTTGAAAGGCCTTGGAAATGACACACCTCGTGTCTGCTCCTGTCTCATTGGCTAGACCTAGTTATGTGACTGCCATTAACTTCAAGGAGGCATCCCCCACATCTGTGGAAGTGAGAGAGCCCAGGACGAGTGTCAACAAGGACCTCCAAAGTCACTGTTGTACTCTTGCTCCTACAGTTACTTTGACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCTCTAGCTGGG
.................................................................................................................................................((((((((.(((((((..(((.......)))..))))).)).)))).))))......................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR343335SRR038858(GSM458541)
MEL202. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577579(Rovira)
total RNA. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577739(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................TCCAAAGTCACTGTTCAG................................................................. 181.000.00----------------------------------------------------1.00--------------
..............................................................................................................AGGCATCCCCCACATTTT.......................................................................................................................... 181.000.00---------------------------1.00---------------------------------------
........................................................CTGCTCCTGTCTCATT.................................................................................................................................................................................. 1690.110.11------------------------------------------------------------------0.11