ID: uc003afq.9
GENE: THOC5(9)
chr22:29924117-29924312-


(1)
AGO1.ip
(2)
AGO2.ip
(9)
B-CELL
(2)
BRAIN
(2)
BREAST
(20)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(1)
HELA
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(9)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AAGGTGCTGCTGGGAGGGGAGTCTGACAACCCAGCTAGCTGAAGCAGCAGGTGCCAGGCAGTAGGGCTGAGGCCTGGCTGGTTGGGAGAGGGAAGGGGAGATTGCTATGACTGATGCTCATCAGCTTGGCACTTTCCTTTGTCCAGAAGCGCCGGAGACCCACACTGGGGGTTCAGTTGGACGACAAACGCAAGGA
.........................................................................................((..((((((((.(((((...(((((....)))))..))))).))))))))..))....................................................
....................................................................................85...........................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR038863(GSM458546)
MM603. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR038856(GSM458539)
D11. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.........................................................................................GGGAAGGGGAGATTGCTATGACT....................................................................................23117.0017.001.00---1.00--1.002.001.00--1.00-------1.00--1.00----1.00----1.00-1.00---1.00-1.00----1.00-1.00--------1.00----
........................................................................................AGGGAAGGGGAGATTGCTATGACT....................................................................................2415.005.00-----1.001.00----------1.00------------------1.00-----------------1.00-------
........................................................................................AGGGAAGGGGAGATTGCTAT........................................................................................2015.005.003.002.00------------------------------------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGA......................................................................................2214.004.00----1.00---------------------1.00-----1.00----------------1.00------------
.........................................................................................GGGAAGGGGAGATTGCTATGAC.....................................................................................2214.004.00-----1.00--------------------------------------1.00--1.00---1.00----------
............................................................................................................................CTTGGCACTTTCCTTTGTCCAG..................................................2213.003.00----------1.00--2.00------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATG.......................................................................................2013.003.00-3.00------------------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGACA....................................................................................2312.004.00------------1.00---------1.00---------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGA......................................................................................2112.002.00------1.00-------------------------------------------------1.00-----
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGACA..........2812.002.00-----------2.00--------------------------------------------------
............................................................................................................................CTTGGCACTTTCCTTTGTCCAGT.................................................2312.003.00----------------1.00-----------------------1.00---------------------
.................................GCTAGCTGAAGCAGCAG..................................................................................................................................................1711.001.00-------------------------------1.00------------------------------
.......................................................AGGCAGTAGGGCTGAGGCCTGG.......................................................................................................................2211.001.00--------------------------------------------------1.00-----------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGACAAACGC.....3311.001.00-------------------1.00------------------------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGA...............2311.001.00-----------------------------1.00--------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGAC.....................................................................................2311.001.00------------------------------------------------------------1.00-
.......................TGACAACCCAGCTAGCTGAAGCAGCAGA.................................................................................................................................................281.000.00--------------1.00-----------------------------------------------
................................................................................................................................................................CACACTGGGGGTTCAGTTGG................2011.001.00------------------1.00-------------------------------------------
...................................................................................................................................................AGCGCCGGAGACCCAGGC...............................181.000.00--------------------------------------1.00-----------------------
..................................................................................................................................................AAGCGCCGGAGACCCACACTGGGGGC........................261.000.00----------------------------------------------------1.00---------
............................................................................................................................CTTGGCACTTTCCTTTGTCCATT.................................................231.000.00-------------------------------------1.00------------------------
.........................................................................................................................................................................GGTTCAGTTGGACGACAA.........1811.001.00---1.00----------------------------------------------------------
............................................................................................................................................................................TCAGTTGGACGACAAACG......1811.001.00---1.00----------------------------------------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTTGGACGAC...........2311.001.00---------1.00----------------------------------------------------
.................................................................................................................................................................ACACTGGGGGTTCAGTTGGACGA............2311.001.00-----------------------------------------------------1.00--------
..........................................AGCAGCAGGTGCCAGGCAGAGGG...................................................................................................................................231.000.00-------------------------------------------1.00------------------
......................................................................................................................................................................GGGGGTTCAGTTGGACGA............1811.001.00-------1.00------------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTAT........................................................................................1911.001.001.00-------------------------------------------------------------
....................................................................................................................................................................CTGGGGGTTCAGTTGGACGACAAACGC.....2711.001.00--------------1.00-----------------------------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTGG.................171.000.00-------------------------------------------------------1.00------
............................................CAGCAGGTGCCAGGCCATG.....................................................................................................................................191.000.00------------------------------------------1.00-------------------
........................................................................................AGGGAAGGGGAGATTGCTATGAGT....................................................................................2411.004.00----------------------------------1.00---------------------------
....................................................................................................................................................................CTGGGGGTTCAGTTGGAC..............1811.001.00---------------------------------------------1.00----------------
.........................................................................................GGGAAGGGGAGATTGCTATGACAA...................................................................................2411.004.00---------------------------1.00----------------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTTGGACGACAAACGCAAGGA3411.001.00----------1.00---------------------------------------------------
...........................................................................................................................................................................TTCAGTTGGACGACAAACTCTG...221.000.00------------------------1.00-------------------------------------
............................................................................................................................CTTGGCACTTTCCTTTG.......................................................1711.001.00--1.00-----------------------------------------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGAC...........2711.001.00-------------------------1.00------------------------------------
..........................................................................................................................................................................GTTCAGTTGGACGACAAACGCAAGGA2611.001.00---------------1.00----------------------------------------------

Antisense strand
AAGGTGCTGCTGGGAGGGGAGTCTGACAACCCAGCTAGCTGAAGCAGCAGGTGCCAGGCAGTAGGGCTGAGGCCTGGCTGGTTGGGAGAGGGAAGGGGAGATTGCTATGACTGATGCTCATCAGCTTGGCACTTTCCTTTGTCCAGAAGCGCCGGAGACCCACACTGGGGGTTCAGTTGGACGACAAACGCAAGGA
.........................................................................................((..((((((((.(((((...(((((....)))))..))))).))))))))..))....................................................
....................................................................................85...........................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR038863(GSM458546)
MM603. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR038856(GSM458539)
D11. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...............................................................................................................................................................................GTTGGACGACAAACGCGGTT. 201.000.00----------------------------------------------------------1.00---
...........GGGAGGGGAGTCTGAGTT....................................................................................................................................................................... 181.000.00--1.00-----------------------------------------------------------
.............................................AGCAGGTGCCAGGCAGTCAC................................................................................................................................... 201.000.00---------------------1.00----------------------------------------
................................................................................................................................................................................TTGGACGACAAACGC..... 1511.001.00-----------------------------------------------------------1.00--
...........................AACCCAGCTAGCTGATGTA...................................................................................................................................................... 191.000.00------------------------------1.00-------------------------------
..................................................................................................................................................................................GGACGACAAACG...... 1270.290.29-------------------------------------------------------------0.29
..........TGGGAGGGGAGTCTGA.......................................................................................................................................................................... 1640.250.25--0.25-----------------------------------------------------------
.............................................................................................................................................................................CAGTTGGACGACA.......... 1380.120.12---------------0.12----------------------------------------------