ID: uc002xro.3
GENE: SLC35C2(3)
chr20:44983555-44983761-


(1)
AGO2.ip
(3)
BRAIN
(8)
BREAST
(17)
CELL-LINE
(4)
CERVIX
(5)
HEART
(4)
HELA
(1)
KIDNEY
(6)
LIVER
(3)
OTHER
(19)
SKIN
(1)
TESTES

Sense strand
TGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCGGTGAGCACGTGCCACTCATCCTCCAGAGAGAGGAACCCCGGCACAGGCAGGGCGGAGGCAGGGCAGGGCCGGACCAGACCTGATGGTGCCTGTCCCCCGCCCTGCAGGCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTC
................................................................................................(((((((((.((((((...((......))..(((....))).)))).)).)))))))))....................................................
............................................................................................93..............................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040031(GSM532916)
G013T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040010(GSM532895)
G529N. (cervix)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038855(GSM458538)
D10. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR189784SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189787SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029126(GSM416755)
143B. (cell line)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGT.................................................23122.0014.00-7.005.00-----2.00-----1.00--2.00---------1.00-1.00-------------------1.001.00-----------------1.00------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAG..................................................22114.0014.005.00---------1.00-1.00-1.00-----1.00--------------1.00------------1.00----1.00-1.00-----------1.00-------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGC....................................................2015.005.00----------1.00-------------------1.00----------1.001.00----1.00---------------------------
.............................................................................................CAGGCAGGGCGGAGGCAGGGCAGGGCCGGACCAGACCTGATGGTGCCTGTCCCCCGCCCTGCAGT.................................................654.000.00---4.00-----------------------------------------------------------------------
..............CCCTCACCCAGATGCTCCTGCAGAAG.......................................................................................................................................................................2613.003.003.00--------------------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGC.................................................2313.0014.00---------------------------------------1.00-------------------1.00------1.00--------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGA.................................................2313.0014.00----------------------------------1.00----------------1.00---------1.00-------------
...................................AGAAGGCTGAACTCGGTGAG........................................................................................................................................................2012.002.00-------------2.00-------------------------------------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGC........................................................................................2212.002.00---------2.00-----------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCATT.................................................232.000.00-----------1.00----------------------------1.00----------------------------------
............................CTCCTGCAGAAGGCTGAACTCGGC...........................................................................................................................................................242.000.00----2.00----------------------------------------------------------------------
.....................CCAGATGCTCCTGCAGAAGGCTG...................................................................................................................................................................2312.002.00-------2.00-------------------------------------------------------------------
.....................CCAGATGCTCCTGCAGAAGGCTGAACT...............................................................................................................................................................2711.001.00---------------------------------------------------------------1.00-----------
..................CACCCAGATGCTCCTGCAGAAGGC.....................................................................................................................................................................2411.001.00------------------------------------------------------------1.00--------------
.................................................................................................................................................................................ACCATGTTCCACCTGCAGCC..........2011.001.00---------------------------------------------------------1.00-----------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGAC...................................................................................2711.001.00--1.00------------------------------------------------------------------------
..................CACCCAGATGCTCCTGCAGAAGGCTG...................................................................................................................................................................2611.001.00----------------------------------------------------------1.00----------------
...................................................................................................GGGCGGAGGCAGGGCTGG..........................................................................................181.000.00------------------------------------------------------1.00--------------------
.......................AGATGCTCCTGCAGAAGGCTGAACT...............................................................................................................................................................2511.001.00-------------------------------------------1.00-------------------------------
...........................................................................GAGAGAGGAACCCCGCCC..................................................................................................................181.000.00---------------1.00-----------------------------------------------------------
.GGCATTCGCTGGACCCTCAC..........................................................................................................................................................................................2011.001.00-----------------------1.00---------------------------------------------------
..........................TGCTCCTGCAGAAGGCTGAACTCGGC...........................................................................................................................................................261.000.00----------------1.00----------------------------------------------------------
.............ACCCTCACCCAGATGCTCCTGCAG..........................................................................................................................................................................2411.001.00---------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................CTGCAGCCACTCATGTTTTG201.000.00-----1.00---------------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTAT...............................................2511.0014.00-----------1.00---------------------------------------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGACC..................................................................................2811.001.00------------------1.00--------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTG................................................2411.0014.00-----------------------------------------------------------------1.00---------
..................................CAGAAGGCTGAACTCGGTGAGC.......................................................................................................................................................2211.001.00---------------------1.00-----------------------------------------------------
...............................................TCGGTGAGCACGTGCTTG..............................................................................................................................................181.000.00--------------------------1.00------------------------------------------------
.......................AGATGCTCCTGCAGAAGGC.....................................................................................................................................................................1911.001.00------------------------------------1.00--------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAAT.................................................231.000.00--------------------------------------------------------------1.00------------
..................................CAGAAGGCTGAACTCG.............................................................................................................................................................1611.001.00--------------------------------------1.00------------------------------------
...............................................................................................................................................CCCCCGCCCTGCAGGCCCTG............................................201.000.00-----1.00---------------------------------------------------------------------
.....................CCAGATGCTCCTGCAGAAGG......................................................................................................................................................................2011.001.00--------------------------------------------1.00------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGACCA.................................................................................2911.001.00-------------------------------1.00-------------------------------------------
..............................................................................................AGGCAGGGCGGAGGCAGGGCAGGGCCGGGTT..................................................................................311.000.00-------------------------------------1.00-------------------------------------
.................................GCAGAAGGCTGAACTCTG............................................................................................................................................................181.000.00--------------------------------------------------------1.00------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCC...................................................2111.005.00----------------------1.00----------------------------------------------------
......................................................................................................................................................................ATCCCATCGACACCACCA.......................181.000.00----------------------------------------------1.00----------------------------
...........................................................................................................................................................................ATCGACACCATGTTCCACAGT...............211.000.00------------------------1.00--------------------------------------------------
.................................GCAGAAGGCTGAACTCGGTGAGCACGTGC.................................................................................................................................................2911.001.00---------------------------------------------1.00-----------------------------
...........................GCTCCTGCAGAAGGCTGAACTCGGCC..........................................................................................................................................................261.000.00----1.00----------------------------------------------------------------------
............................................................................................ACAGGCAGGGCGGAGTCT.................................................................................................181.000.00---------------1.00-----------------------------------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGAAC..................................................................................281.000.00------------------1.00--------------------------------------------------------
...........................GCTCCTGCAGAAGGCTGAACTCGGC...........................................................................................................................................................251.000.00----------------------------------------------------------------------1.00----
..............CCCTCACCCAGATGCTCCTGCAGAAGGCTG...................................................................................................................................................................3011.001.00----------------1.00----------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGCT................................................2411.0014.00---------------------------------------------------------------------1.00-----
................................TGCAGAAGGCTGAACTCGG............................................................................................................................................................1911.001.00------------1.00--------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTAC...............................................2511.0014.00--------1.00------------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTA................................................2411.0014.00-------------------1.00-------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGA....................................................201.000.00----------------------------1.00----------------------------------------------
..................................................GTGAGCACGTGCCACTCATCCTC......................................................................................................................................2311.001.00----------------------------------------------------1.00----------------------
........................GATGCTCCTGCAGAAGGCTGAACTCGG............................................................................................................................................................2711.001.00----1.00----------------------------------------------------------------------
...................................AGAAGGCTGAACTCGAATC.........................................................................................................................................................191.000.00----------------------------------------------------------------1.00----------
..........................................................................................................................................................................CATCGACACCATGTTCCACCTGCAGCCACT.......3011.001.00-------1.00-------------------------------------------------------------------
.........................ATGCTCCTGCAGAAGGCTGAACTCG.............................................................................................................................................................2511.001.00-------------------------1.00-------------------------------------------------
..............................................................................................................................GACCTGATGGTGCCTGTCCCCCGCCCTGCAGT.................................................321.000.00--1.00------------------------------------------------------------------------
..................................................................................................AGGGCGGAGGCAGGGC.............................................................................................1640.250.25-------------------0.25-------------------------------------------------------
..............................................................................................AGGCAGGGCGGAGGCTCC...............................................................................................1880.120.12--------------------------------------------------------------------------0.12
..............................................................................................AGGCAGGGCGGAGGC..................................................................................................1580.120.12--------------------0.12------------------------------------------------------

Antisense strand
TGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCGGTGAGCACGTGCCACTCATCCTCCAGAGAGAGGAACCCCGGCACAGGCAGGGCGGAGGCAGGGCAGGGCCGGACCAGACCTGATGGTGCCTGTCCCCCGCCCTGCAGGCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTC
................................................................................................(((((((((.((((((...((......))..(((....))).)))).)).)))))))))....................................................
............................................................................................93..............................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040031(GSM532916)
G013T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040010(GSM532895)
G529N. (cervix)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038855(GSM458538)
D10. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR189784SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189787SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029126(GSM416755)
143B. (cell line)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
........................................................................................................................................................................................TCCACCTGCAGCCACTCCTG... 203.000.00------3.00--------------------------------------------------------------------
.................................GCAGAAGGCTGAACTCGGT........................................................................................................................................................... 191.000.00-----1.00---------------------------------------------------------------------
........................................................................................................................................................TGCAGGCCTCCAGAAATC..................................... 181.000.00--------------------------------1.00------------------------------------------
.........................................................................................................................................GCCTGTCCCCCGCCCTG..................................................... 1730.330.33------------------------------------------------------------------------0.33--
..................................................................................................................................TGATGGTGCCTGTCC.............................................................. 1580.250.25-----------------------------------------------------------------------0.25---
...........................................................................................CACAGGCAGGGCGGAG.................................................................................................... 1640.250.25-------------------------------------------------------------------------0.25-
..................................................................................................................................TGATGGTGCCTGTCCAT............................................................ 170.120.00-----------------------------------------------------------------------0.12---