ID: uc002xqy.2
GENE: ZNF335(0)
chr20:44596224-44596422-


(2)
AGO1.ip
(3)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(2)
BRAIN
(6)
BREAST
(11)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(18)
SKIN
(1)
XRN.ip

Sense strand
CACCAAGGCCACACTGCTGCGCCACATGCGGGAACGCCACTTCCGTCCAGGTGCGTCAGTAGCAGCCTACCTGCTTGGACTGCATGGGTAGGGGTGGGGTGCTGGGAGCCAGACATGGCAAGCTTGTCTTACCCTCCCTCCACTTCCAGTAGCAGCAGCCGCAGCAGCAGCTGGTAAAAAAGGACGTCTACGGAAGTGG
..........................................................................................(((((((((....(((....(((((.((....)))))))..)))...))))))))).....................................................
........................................................................................89..........................................................149................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577580(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189785DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343335SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040030(GSM532915)
G013N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532882(GSM532882)
G696T. (cervix)
..............................................................................................................................TCTTACCCTCCCTCCACTTCCAGT.................................................24115.0015.003.001.00--1.002.00-----2.00---------------1.00-1.00----1.00----1.00---1.00------1.00------
..............................................................................................................................TCTTACCCTCCCTCCACTTCCAG..................................................23113.0013.00-6.00-1.00----1.00-----1.00-------1.00---1.00--------------1.00----1.00----------
.............................................................................................GTGGGGTGCTGGGAGCCAGA......................................................................................2018.008.00--6.00---------2.00--------------------------------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTCCA...................................................2216.006.00-------2.00-1.00---------------------1.00----------1.00-----1.00--------
.............................................................................................GTGGGGTGCTGGGAGCCAGACA....................................................................................2216.006.002.00---3.00-------------------1.00--------------------------------
.......................................................................................GTAGGGGTGGGGTGCTGGGAGCCAGA......................................................................................2615.005.005.00--------------------------------------------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTCC....................................................2114.004.00-----1.00---1.00------1.00---------------------------1.00------------
................................................................................................................................TTACCCTCCCTCCACTTCCAGT.................................................2214.004.00-------------------1.00-------------1.00-----------1.00-------1.00---
................................................................................................................................TTACCCTCCCTCCACTTCCAGA.................................................2212.002.00-1.00-----------------------------------1.00-------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTC.....................................................2012.002.00---------------1.00--1.00--------------------------------------
................................................................................................................................TTACCCTCCCTCCACTTCCAG..................................................2112.002.00-2.00-------------------------------------------------------
.............................................................................................GTGGGGTGCTGGGAGCCAGAAG....................................................................................2212.008.00---------------------1.00------------------------------1.00----
................................................................................................................................TTACCCTCCCTCCACTTTCAG..................................................212.000.00---2.00-----------------------------------------------------
..............................................................................................TGGGGTGCTGGGAGCCAGA......................................................................................1912.002.002.00--------------------------------------------------------
................................AACGCCACTTCCGTCCAG.....................................................................................................................................................1811.001.00--------------------------------------1.00------------------
...............................................................................................................................................................................AAAAAAGGACGTCTACGGAAGT..2211.001.00---------------------------------------------------1.00-----
........................................................................................................................................................CAGCAGCCGCAGCAGCAGCAAC.........................221.000.00----------1.00----------------------------------------------
.....................................................................................................................................CTCCCTCCACTTCCAGGG................................................181.000.00-------------------------------------------------1.00-------
..........................................................................................................AGCCAGACATGGCAACGA...........................................................................181.000.00----------------------------------------1.00----------------
................................................................................................................................................TCCAGTAGCAGCAGCCCCAG...................................201.000.00--------------------1.00------------------------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTCCAC..................................................2311.006.00-----------------------1.00---------------------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTCCAGC.................................................2411.0013.00--------1.00------------------------------------------------
...............................................................................................................................................................................AAAAAAGGACGTCTACGGAAGTGG2411.001.00-------------------------1.00-------------------------------
..............................................................................................TGGGGTGCTGGGAGCCAGACATAG.................................................................................241.000.00-------------1.00-------------------------------------------
................................................................................................................................................................GCAGCAGCAGCTGGTAAAAAAGGACGTCTACGGA.....3411.001.00------------------------------------1.00--------------------
...................................................................................................................................................................................AAGGACGTCTACGGAAGT..1811.001.00----------------------------1.00----------------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTCCAGA.................................................2411.0013.00----------1.00----------------------------------------------
............................................................................................GGTGGGGTGCTGGGAGCCAG.......................................................................................2011.001.00-1.00-------------------------------------------------------
.................................................................................................................................................................................AAAAGGACGTCTACGGAAGTG.2111.001.00-----------------1.00---------------------------------------
..............................................................................................................................TCTTACCCTCCCTCCACTTCCAT..................................................2311.006.00-----------------------------------------------1.00---------
....................................................................................................................................................................CAGCAGCTGGTAAAAACTG................191.000.00---1.00-----------------------------------------------------
...........................................................................................................................................................CAGCCGCAGCAGCAGTCGT.........................191.000.00--------------------------------1.00------------------------
......................................................................................................................................................................GCAGCTGGTAAAAAAGGACGTCTACGG......2711.001.00------------------------------------------------------1.00--
.......................................................................TGCTTGGACTGCATGG................................................................................................................1630.330.33-------------0.33-------------------------------------------
..........................................................................................GGGGTGGGGTGCTGGGA............................................................................................1790.110.11--------------------------------------------------------0.11

Antisense strand
CACCAAGGCCACACTGCTGCGCCACATGCGGGAACGCCACTTCCGTCCAGGTGCGTCAGTAGCAGCCTACCTGCTTGGACTGCATGGGTAGGGGTGGGGTGCTGGGAGCCAGACATGGCAAGCTTGTCTTACCCTCCCTCCACTTCCAGTAGCAGCAGCCGCAGCAGCAGCTGGTAAAAAAGGACGTCTACGGAAGTGG
..........................................................................................(((((((((....(((....(((((.((....)))))))..)))...))))))))).....................................................
........................................................................................89..........................................................149................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577580(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189785DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343335SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040030(GSM532915)
G013N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532882(GSM532882)
G696T. (cervix)
........................................................................................................................................................CAGCAGCCGCAGCAGCAGAAC.......................... 212.000.00------2.00--------------------------------------------------
...................................................................................................................................CCCTCCCTCCACTTCCAAGTG............................................... 211.000.00-----------------------------------1.00---------------------
.....................................................................................................................................CTCCCTCCACTTCCAGTAGTG............................................. 211.000.00------------------------------1.00--------------------------
....................................................................................................................................................................................AGGACGTCTACG....... 1280.120.12-------------------------------------------------------0.12-