ID: uc002vit.2
GENE: RNF25(3)
chr2:219530733-219530931-


(3)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(7)
HELA 		(1)
LIVER 		(2)
OTHER 		(11)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATAACAACATCCCTCATGGCCAGTGTGTCATCTGCCTCTATGGTTTCCAGGTGGGTTTCTCTCTTGGGACCTGGCATTCTGTTTGGGACCAGCAGATGAGGGCTGTGAGAGAGCTCTGACTTAGTGCCCTACATCTGCCTTCCCTCTAGGAGAAGGAGGCCTTTACCAAAACACCCTGTTACCACTACTTCCACTGCCA
....................................................................................((((...((((((((((((.((.(((....))).)).....))))).)))))))..)))).......................................................
............................................................................77......................................................................149................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR038863(GSM458546)
MM603. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................TTTGGGACCAGCAGATGAGG..................................................................................................20131.0031.004.008.002.003.005.001.00----------2.002.00---------------------1.00-1.00------1.00----1.00-----
..................................................................................TTGGGACCAGCAGATGAGGG.................................................................................................20110.0010.00-1.001.00-2.001.00----1.00-----------------1.00--1.00---------------1.00-------1.00---
.................................................................................TTTGGGACCAGCAGATGAGGG.................................................................................................21110.0010.003.002.00---2.00--------3.00--------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAG...................................................................................................1919.009.002.001.002.001.00-1.00-1.00---------------1.00-----------------------------------
..................................................................................TTGGGACCAGCAGATGAGG..................................................................................................1919.009.00-2.002.001.00---2.00-----1.00-----------------------------1.00---------------
.................................................................................TTTGGGACCAGCAGATGAGGGA................................................................................................2216.0010.00--4.00------------------1.001.00------------------------------------
........................................................TTCTCTCTTGGGACCTGGCATTCTGTTTGGGACCAGCAGATGAGGGCTGTGAGAGAGCTCTGACTTAGTGCCCTACATCTGCCTTCCCTCTA...................................................9214.004.00--------4.00--------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGGCT...............................................................................................2314.004.00---1.00---1.00-----1.00--------1.00------------------------------------
..................................................GTGGGTTTCTCTCTTGGGACCTGGCATTCTGTTTGGGACCAGCAGATGAGGGCTGTGAGAGAGCTCTGACTTAGTGCCCTACATCTGCCTTCCCTCTAG..................................................9914.004.00------4.00----------------------------------------------------
...................................................................................................................................................AGGAGAAGGAGGCCTTTACCA...............................2113.003.00---------------3.00-------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGCT...............................................................................................2213.003.00-1.00---------------------------1.00--------------1.00--------------
..................................................................................TTGGGACCAGCAGATGAGGGCTT..............................................................................................2313.003.00------------2.00--------1.00-------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGGC................................................................................................2213.003.00--1.00--1.00--------------1.00--------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGA................................................................................................2112.0010.001.00------------------1.00---------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGGAT...............................................................................................2312.0010.00--1.00---------------------------------------1.00----------------
.................................................................................TTTGGGACCAGCAGATGAGGGT................................................................................................2212.0010.002.00----------------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAG...................................................................................................1812.002.00------------1.00--------------------------------1.00-------------
.................................................................................TTTGGGACCAGCAGATGAGGGCAT..............................................................................................2412.003.00-1.00--------------------------------------------------1.00------
..................................................................................TTGGGACCAGCAGATGAGGGAT...............................................................................................2212.0010.00-------------------1.00-------------1.00-------------------------
..........................................................................................AGCAGATGAGGGCTGTGAGAGA.......................................................................................2212.002.00-------------------------2.00---------------------------------
...................................................................................TGGGACCAGCAGATGAGGGCTGTGAGAGAGCTCTGACTTAGTGCCCTACATCTGCCTTC.........................................................5912.002.00------2.00----------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGAA................................................................................................2212.0031.001.00-1.00--------------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGGCATC.............................................................................................2512.003.00-----------2.00-----------------------------------------------
...................................................................................TGGGACCAGCAGATGAGGGC................................................................................................2012.002.001.00--------------------------------------------------1.00-------
.............................................................................................................................GCCCTACATCTGCCTTCCCTCTAG..................................................2411.001.00--------------------------------1.00--------------------------
...................................................................................TGGGACCAGCAGATGAGGGCTT..............................................................................................2211.001.00--------------------------1.00--------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGCTTTT............................................................................................2511.003.00--------------------------------------------------------1.00--
..................................................................................TTGGGACCAGCAGATGAGGGCTTA.............................................................................................2411.003.00-------------1.00---------------------------------------------
...................................................................................TGGGACCAGCAGATGAGGGCTTTA............................................................................................2411.001.00-------1.00---------------------------------------------------
...................................................................................TGGGACCAGCAGATGAGG..................................................................................................1811.001.00--------------------------1.00--------------------------------
..........................................................................................AGCAGATGAGGGCTGAT............................................................................................171.000.00---------1.00-------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGCAAT.............................................................................................2411.001.00------------------1.00----------------------------------------
...................................................................................TGGGACCAGCAGATGAGGGCATA.............................................................................................2311.002.00--------------------------------------1.00--------------------
................................................................................GTTTGGGACCAGCAGATGAGG..................................................................................................2111.001.00---1.00-------------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGCTAA.............................................................................................2411.003.00--------------------------------------------------1.00--------
......................................................................................................................................................................CAAAACACCCTGTTACCACT.............2011.001.00-----------------------1.00-----------------------------------
.......................................................................................................................................................................................ACTACTTCCACTGCCATG181.000.00------------------------1.00----------------------------------
..........................................................................................AGCAGATGAGGGCTGGACT..........................................................................................191.000.00---------1.00-------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGGAA...............................................................................................2311.0010.001.00----------------------------------------------------------
..................................................................................................................................................................................TTACCACTACTTCCACTGA..191.000.00-------------------------------------1.00---------------------
...................................................................................TGGGACCAGCAGATGAGGGCCGT.............................................................................................2311.002.00--------------------1.00--------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGATC...............................................................................................2311.0031.00-----------1.00-----------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGAA.................................................................................................2011.002.00----------------------------------1.00------------------------
...................................................................................TGGGACCAGCAGATGAGGGCT...............................................................................................2111.001.001.00----------------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGGCAAA.............................................................................................2511.003.00----------1.00------------------------------------------------
..............................................................................................................................CCCTACATCTGCCTTCCCTCT....................................................2111.001.00-------------------------------------------------1.00---------
..................................................................................TTGGGACCAGCAGATGAGGGAA...............................................................................................2211.0010.001.00----------------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGCA................................................................................................2211.0031.001.00----------------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGTAT..............................................................................................2311.0010.001.00----------------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGC................................................................................................2111.001.00-1.00---------------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGA.................................................................................................2011.009.00------------------------------------------------------1.00----
.................................................................................TTTGGGACCAGCAGATGTTGG.................................................................................................211.000.00------------------------1.00----------------------------------
................................................................................................TGAGGGCTGTGAGAGAGCTCTGA................................................................................2311.001.00------------------------------------1.00----------------------
.................................................................................TTTGGGACCAGCAGATGAGGGCTTAT............................................................................................2611.004.00------------------------------1.00----------------------------
........................................................................................CCAGCAGATGAGGGCTGTGAGAGAGCTCTGA................................................................................3111.001.00----------------------------------------1.00------------------
..................................................................................TTGGGACCAGCAGATGAGGGCTTT.............................................................................................2411.003.00-----1.00-----------------------------------------------------
.........................................................................................................................................................................AACACCCTGTTACCACTACT..........2011.001.00---------1.00-------------------------------------------------
..................................................................................TTGGGACCAGCAGATGAGGGT................................................................................................2111.0010.00-----------------------------------1.00-----------------------
....................................................................................GGGACCAGCAGATGAGGGCTT..............................................................................................211.000.00------------------1.00----------------------------------------
........................................................................................................GTGAGAGAGCTCTGACTT.............................................................................1811.001.00----------------------------------------------1.00------------
..................................................................................TTGGGACCAGCAGATGAGGGCTGT.............................................................................................2411.001.00---1.00-------------------------------------------------------
.................................................................................TTTGGGACCAGCAGATGAGGAAT...............................................................................................2311.0031.00---------------------------1.00-------------------------------
.................................................................................TTTGGGACCAGCAGATGA....................................................................................................1820.500.50--0.50--------------------------------------------------------
..................................................................................TTGGGACCAGCAGATGA....................................................................................................1720.500.50---------------------------------------------------------0.50-
............................................................................................CAGATGAGGGCTGTGA...........................................................................................1640.250.25----------------------------------------------------------0.25
................................................................................................................................................TCTAGGAGAAGGAGGC.......................................1640.250.25----------0.25------------------------------------------------
....................................................................................GGGACCAGCAGATGA....................................................................................................15100.100.10---------------------------0.10-------------------------------

Antisense strand
ATAACAACATCCCTCATGGCCAGTGTGTCATCTGCCTCTATGGTTTCCAGGTGGGTTTCTCTCTTGGGACCTGGCATTCTGTTTGGGACCAGCAGATGAGGGCTGTGAGAGAGCTCTGACTTAGTGCCCTACATCTGCCTTCCCTCTAGGAGAAGGAGGCCTTTACCAAAACACCCTGTTACCACTACTTCCACTGCCA
....................................................................................((((...((((((((((((.((.(((....))).)).....))))).)))))))..)))).......................................................
............................................................................77......................................................................149................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR038863(GSM458546)
MM603. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................GCCCTACATCTGCCTTCCCTCTAGG................................................. 2511.001.00----------1.00------------------------------------------------
.........TCCCTCATGGCCAGTGTGTGCAG....................................................................................................................................................................... 231.000.00---------1.00-------------------------------------------------