ID: uc002thw.2
GENE: POLR1B(11)
chr2:113326123-113326372+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(11)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTTAGAGTGAGATACGTAAAGCAAGTGGTATTTCTAACTGGTCGCTTCCCTGTGCTTCCCAGTTGATCCCTTCAGCACTCATGATGCTGGGTGGGGATGGTTTTCTCTTGAGTCTTTGAGTACTGAACTCTGAGAAATGGTAAGAGTAAATGTGTAACCAGTTGCAGTTATTTTGTGCCTTGGACATCTGCTCTTCCAGATCTTCATGAATGTCGCTATCTTTGAGGATGAAGTTTTTGCTGGAGTTAC
..........................................................................................................................................(((.(((((((.((((....((((..((((.....))))..)).)))))).))))))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR343334SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189783SRR037936(GSM510474)
293cand1. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343336SRR037935(GSM510473)
293cand3. (cell line)		SRR189787SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189786SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040042(GSM532927)
G428N. (cervix)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189785SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................TGGTAAGAGTAAATGTGTAAGCA.........................................................................................23121.001.00-12.00--8.00-------------------------------------1.00------------
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCAGT.................................................23112.009.00--------1.003.00-2.00---1.00--2.00-----1.00---1.00-----------1.00--------------
...................................................................................................................................................................................CTTGGACATCTGCTCTTCCAGT.................................................2219.004.00--8.00------------------------------------------------1.00---
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCAG..................................................2219.009.00---1.00-2.00-1.00----1.00-------------1.001.00----------------1.00---1.00------
..........................................................................................................................................TGGTAAGAGTAAATGTGTAAGC..........................................................................................2217.001.00----------2.00--------2.00---1.00---------1.001.00--------------------
.........................................................................................................................................ATGGTAAGAGTAAATGTGTAAGCA.........................................................................................246.000.00-5.00-------------------------------------1.00---------------
.....................................................................................................................................................................................TGGACATCTGCTCTTCCAG..................................................1914.004.00---4.00---------------------------------------------------
...................................................................................................................................................................................CTTGGACATCTGCTCTTCCAG..................................................2114.004.00--4.00----------------------------------------------------
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCAGA.................................................2313.003.00--------1.00-------1.00------------1.00-------------------------
....................................................................................................................................................................................TTGGACATCTGCTCTTCCAGTT................................................2212.002.00---1.00-------------1.00-------------------------------------
....................................................................................................................................................................................TTGGACATCTGCTCTTCCAG..................................................2012.002.00----------------------------------------------1.001.00-------
..........................................................................................................................................................................................................................ATCTTTGAGGATGAAGTTTTTGCTGGAG....2812.002.00--------------------2.00----------------------------------
..........................................................................................................................................TGGTAAGAGTAAATGTGTAAG...........................................................................................2112.001.002.00------------------------------------------------------
.........................................................................................................................................ATGGTAAGAGTAAATGTGTAAGC..........................................................................................232.000.00----------------1.00-------------1.00------------------------
....................................................................................................................................................................................TTGGACATCTGCTCTTCCAGT.................................................2112.002.00------1.00--------------1.00---------------------------------
.....................................................................................................................TGAGTACTGAACTCTG.....................................................................................................................1621.001.00----------------------------------------------------0.500.50-
..........................................................................................................................................TGGTAAGAGTAAATGTGTAA............................................................................................2011.001.00--------------------------------1.00----------------------
...............................................................................................................................................................................................................................TGAGGATGAAGTTTTTGATGT......211.000.00-------------------------------------------1.00-----------
.......................AAGTGGTATTTCTAATTAG................................................................................................................................................................................................................191.000.001.00------------------------------------------------------
.............................................................................................GGGGATGGTTTTCTCTTC...........................................................................................................................................181.000.00-----------------------------------1.00-------------------
.....................................................................................................................................................................................TGGACATCTGCTCTTCCAGTT................................................2111.004.00---------------------------------------------1.00---------
........................................................................................................................................................................................ACATCTGCTCTTCCATACG...............................................191.000.00-------------------------------------------------1.00-----
..................................................................................................................................................................................CCTTGGACATCTGCTTTTC.....................................................191.000.00---1.00---------------------------------------------------
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCAGAA................................................2411.003.00--------------------------------------1.00----------------
.............................................................................................................................................TAAGAGTAAATGTGTAAG...........................................................................................181.000.00---1.00---------------------------------------------------
........................................................................................................................................AATGGTAAGAGTAAATGT................................................................................................1811.001.00--------------1.00----------------------------------------
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCA...................................................2111.001.00------------1.00------------------------------------------
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCCGT.................................................231.000.00-------------------------------------1.00-----------------
...................................................................................................GGTTTTCTCTTGAGTTCC.....................................................................................................................................181.000.00----1.00--------------------------------------------------
........................................................................................................TCTCTTGAGTCTTTGTA.................................................................................................................................171.000.00-----------------1.00-------------------------------------
..........................................................................................................................................TGGTAAGAGTAAATGTGTAAGCAT........................................................................................2411.001.00--------------1.00----------------------------------------
.......................................................................................................................AGTACTGAACTCTGAGAAATGGTAAGA........................................................................................................2711.001.00----------------------1.00--------------------------------
..........................................................................................................................................TGGTAAGAGTAAATGTGTAAGA..........................................................................................2211.001.00-----------------------------------------1.00-------------
.................................................................GATCCCTTCAGCACTCCGA......................................................................................................................................................................191.000.00---1.00---------------------------------------------------
..................................................................................................................................................................................CCTTGGACATCTGCTCTTCCATA.................................................2311.001.00--------1.00----------------------------------------------
....................................................................................................................................................................................TTGGACATCTGCTCTTCCAGA.................................................2111.001.00-------------------------------1.00-----------------------
............................................................................................................................................GTAAGAGTAAATGTGTAAGCA.........................................................................................211.000.00---------------1.00---------------------------------------
.............................................................................................................................................................................................................................TTTGAGGATGAAGTTTTTGCT........2111.001.00------------------------------------1.00------------------
...................................................................................................................................................................................CTTGGACATCTGCTCTTCCAGA.................................................2211.001.00--------------------------------------------------1.00----
.................................................................................................................................................................................................................................AGGATGAAGTTTTTGCTG.......1830.330.33---------------------0.33---------------------------------

Antisense strand
TTTTAGAGTGAGATACGTAAAGCAAGTGGTATTTCTAACTGGTCGCTTCCCTGTGCTTCCCAGTTGATCCCTTCAGCACTCATGATGCTGGGTGGGGATGGTTTTCTCTTGAGTCTTTGAGTACTGAACTCTGAGAAATGGTAAGAGTAAATGTGTAACCAGTTGCAGTTATTTTGTGCCTTGGACATCTGCTCTTCCAGATCTTCATGAATGTCGCTATCTTTGAGGATGAAGTTTTTGCTGGAGTTAC
..........................................................................................................................................(((.(((((((.((((....((((..((((.....))))..)).)))))).))))))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR343334SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189783SRR037936(GSM510474)
293cand1. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343336SRR037935(GSM510473)
293cand3. (cell line)		SRR189787SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189786SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040042(GSM532927)
G428N. (cervix)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189785SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................................................................................TGAGGATGAAGTTTTTGGAA....... 2022.000.0017.00----2.00-3.00-----------------------------------------------
..................................................................................................TGGTTTTCTCTTGAGTCTTT.................................................................................................................................... 2013.003.00------3.00------------------------------------------------
..........................................................................................................................................................................................................................................TTTTTGCTGGAGTTAGTA 182.000.00-------------2.00-----------------------------------------
...............................................................................................................................................................................................................................TGAGGATGAAGTTTTTGGA........ 192.000.002.00------------------------------------------------------
.......................................TGGTCGCTTCCCTGT.................................................................................................................................................................................................... 1511.001.00-----1.00-------------------------------------------------
......................................................................................................................................................................................................AGATCTTCATGAATGTACG................................. 191.000.00-------------------------1.00-----------------------------
.................TAAAGCAAGTGGTAT.......................................................................................................................................................................................................................... 15100.100.10------------------------------------------------------0.10