ID: uc002saj.2
GENE: PAPOLG(8)
chr2:61008820-61009069+


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
OTHER 		(17)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCAGTATTTCCTTTGACTTTGACTATCAGACATATCCAACTTCAGAAATAAATGCAGTTGGGGAGGGAAAATGTACTTCTTAAACTTGAGGAAATGTAGTATTAAATTTATATTTCATATTCTTCAGACTTTTGGGGAAATGAAGTGAGAACAACTGAAATAGGAGAATAGATCAGTTATTCTGCTTCTAATTTCACAGGTAAATCCATCAGATAGGTATCATCTCATGCCCATAATCACCCCTGCCTA
.....................................................................................................................................((..((((((((((.((((.((((((..((......))..)))))).)))))))))..))))).))...................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189785SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040024(GSM532909)
G613N. (cervix)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................TGGGGAAATGAAGTGAGAACAACT.............................................................................................24117.0017.00-4.008.00------------1.00---------1.00---1.00------1.00---------1.00-------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACTGTT..........................................................................................26112.001.0012.00-----------------------------------------------------
....................................................................................................................................TTGGGGAAATGAAGTGAGAACA................................................................................................2218.008.00-6.00-----1.00-------------------1.00--------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGT.................................................2417.001.003.00----1.00--1.00---------------------1.001.00----------------------
....................................................................................................................................TTGGGGAAATGAAGTGAGAAC.................................................................................................2116.006.00------2.00-------2.00-1.00--------------------------1.00----------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACA...................................................2216.006.00-----2.00----------------1.001.00---------------1.00---------1.00----
.......................................................................................................................................GGGAAATGAAGTGAGAACAACTG............................................................................................2313.003.00-------1.00--1.00----------1.00--------------------------------
.....................................................................................................................................TGGGGAAATGAAGTGAGAAC.................................................................................................2013.003.00--1.00-----------------------1.00-----1.00---------------------
....................................................................................................TATTAAATTTATATTTCATATTCTTCAG..........................................................................................................................2813.003.00----3.00-------------------------------------------------
..............................................................................................................................................................AAATAGGAGAATAGATCA..........................................................................1813.003.00-----------1.00-1.00----1.00-----------------------------------
........................................................................................................................................GGAAATGAAGTGAGAACAACTGA...........................................................................................2313.003.00------1.00-------------------------------------1.00--1.00------
....................................................................................................................................TTGGGGAAATGAAGTGAGAACAACT.............................................................................................2512.002.00-------1.00--------1.00-------------------------------------
.....................................................................................................................................TGGGGAAATGAAGTGAGAACAA...............................................................................................2212.002.00-----------------1.00------------------------------1.00-----
..................................................................................................................................................................................TATTCTGCTTCTAATTTCACAGT.................................................2312.001.00----------------------------------1.00--1.00----------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAA..................................................2312.006.00---------2.00--------------------------------------------
.......................................................................................................................................GGGAAATGAAGTGAGAACAACTGAAA.........................................................................................2612.002.00------------2.00-----------------------------------------
...................................................................................................................................................GAGAACAACTGAAATAGGAGA..................................................................................2111.001.00--------------------1.00---------------------------------
........................................................................................................................................GGAAATGAAGTGAGAACAACTGAAA.........................................................................................2511.001.00-------------1.00----------------------------------------
....................................................................................................................................................................................................................GATAGGTATCATCTCATGCCC.................2111.001.00------------------------------------------1.00-----------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACTG............................................................................................2411.001.00--------1.00---------------------------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGTAA...............................................2611.001.00---------------------------------1.00--------------------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACT.............................................................................................2311.001.00--------------------------------------1.00---------------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACTGA...........................................................................................2511.001.00----------------------------------------1.00-------------
.....................................................................................................................................TGGGGAAATGAAGTGAGAACAAC..............................................................................................2311.001.00-----------------------------------1.00------------------
..................................................................................................................................................................................TATTCTGCTTCTAATTTCACAG..................................................2211.001.00-----------------------------------------1.00------------
....................................................................................................................................................................................TTCTGCTTCTAATTTAG.....................................................171.000.00----1.00-------------------------------------------------
......................................................................................................................................................AACAACTGAAATAGGGTA..................................................................................181.000.00------------------------1.00-----------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGTT................................................2511.001.00-------------------1.00----------------------------------
.................................................TAAATGCAGTTGGGGTAT.......................................................................................................................................................................................181.000.00----------------------------1.00-------------------------
.........................................................GTTGGGGAGGGAAAA..................................................................................................................................................................................1501.001.00----------1.00-------------------------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGA.................................................2411.001.00---------------------------------------------1.00--------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAG..................................................2311.001.00-----1.00------------------------------------------------
........................................................................................................................................GGAAATGAAGTGAGAACAACTG............................................................................................2211.001.00---------------1.00--------------------------------------
........................................................................................GAGGAAATGTAGTATT..................................................................................................................................................1630.330.33---------------------------------------------------0.33--
...............................................................................................................................................................AATAGGAGAATAGATC...........................................................................1650.200.20----------------------------------------------------0.20-

Antisense strand
TGCAGTATTTCCTTTGACTTTGACTATCAGACATATCCAACTTCAGAAATAAATGCAGTTGGGGAGGGAAAATGTACTTCTTAAACTTGAGGAAATGTAGTATTAAATTTATATTTCATATTCTTCAGACTTTTGGGGAAATGAAGTGAGAACAACTGAAATAGGAGAATAGATCAGTTATTCTGCTTCTAATTTCACAGGTAAATCCATCAGATAGGTATCATCTCATGCCCATAATCACCCCTGCCTA
.....................................................................................................................................((..((((((((((.((((.((((((..((......))..)))))).)))))))))..))))).))...................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189785SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040024(GSM532909)
G613N. (cervix)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................ATATTCTTCAGACTTTTTGA................................................................................................................. 203.000.00---3.00--------------------------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTTG.................................................................................................................. 192.000.00---2.00--------------------------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTT................................................................................................................... 181.000.00---1.00--------------------------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTG................................................................................................................... 181.000.00-----------------1.00------------------------------------
.....................................................................AAATGTACTTCTTAAACGT.................................................................................................................................................................. 191.000.00--------------------------------------------------1.00---
....................................................................................................................................................................................................................GATAGGTATCATCTCAGTTT.................. 201.000.00-----------1.00------------------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTTGAA................................................................................................................ 211.000.00---1.00--------------------------------------------------
....................................................................................................................CATATTCTTCAGACT....................................................................................................................... 15100.100.10-----------------------------------------------------0.10