ID: uc002rji.2
GENE: CAD(19)
chr2:27456355-27456543+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(7)
HELA 		(1)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
ACACCATTGGTATCAGCCAGCCTCAGTGGAGGGAGCTCAGTGACCTCGAGGTGGGCTGGGACCTGGTGGGTTACCCGGAGGCTGGATGATGCTTGGGGGAAAGTGTGAACAACTCAGCTAAGCTCCCTGCCTCCTGTAGTCTGCTCGCCAATTCTGCCAGACCGTGGGGTACCCCTGTGTGGTGCGCCC
...................................................................((....)).((((((.((..((.((((((..((...((....))..))..)))))))))).)))))).......................................................
..................................................................67......................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189787SRR029125(GSM416754)
U2OS. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR040040(GSM532925)
G612N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR189785SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
......................................................................................................................TAAGCTCCCTGCCTCCTGTAGT.................................................22119.0019.003.00--1.00---2.00--2.001.002.00--2.00-----1.00--1.00-1.00---------1.00-1.001.00--------------
.......................................................................TACCCGGAGGCTGGATGATGCT................................................................................................22113.0013.003.00----1.00--1.00--3.00-------1.00--1.00----------1.00-------1.00-------1.00----
.................................AGCTCAGTGACCTCGAG...........................................................................................................................................17112.0012.00--9.00-----------------2.00-------------------1.00-------------
..................................................GTGGGCTGGGACCTGGTGGGTTACCCGGAGGCTGGATGATGCTTGGGGGAAAGTGTGAACAACTCAGCTAAGCTCCCTGCCTCCTGTAG..................................................8918.008.00-8.00----------------------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGC.................................................................................................2118.008.00----5.00---1.00----1.00--------------------------------1.00-------
......................................................................................................................TAAGCTCCCTGCCTCCTGTAGA.................................................2216.002.006.00-----------------------------------------------------
.......................................................................................................................AAGCTCCCTGCCTCCTGTAGT.................................................2115.005.001.00---------1.00-------2.00-----------------------1.00-----------
.......................................................................TACCCGGAGGCTGGATGATGCTTGGT............................................................................................2614.003.00---4.00--------------------------------------------------
..................................................GTGGGCTGGGACCTGGTGGGTTACCCGGAGGCTGGATGATGCTTGGGGGAAAGTGTGAACAACTCAGCTAAGCTCCCTGCCTCCTGTAGTTCT..............................................934.000.00-4.00----------------------------------------------------
.....................................................................................................................CTAAGCTCCCTGCCTCCTGTAGT.................................................2314.004.003.00----------------------1.00------------------------------
......................................................................................................................TAAGCTCCCTGCCTCCTGTAGAA................................................2314.002.003.00------------------------------1.00----------------------
.....................CTCAGTGGAGGGAGCTCTTTT...................................................................................................................................................213.000.00---------3.00--------------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGCTTGG.............................................................................................2513.003.001.00----1.00----1.00-------------------------------------------
..................................................GTGGGCTGGGACCTGGTGGGTTACCCGGAGGCTGGATGATGCTTGGGGGAAAGTGTGAACAACTCAGCTAAGTT.................................................................742.000.00-2.00----------------------------------------------------
........................................................................ACCCGGAGGCTGGATGATGCTAAT.............................................................................................242.000.00---2.00--------------------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGCTT...............................................................................................2312.002.00-------------------------1.00-1.00--------------------------
........................................................................ACCCGGAGGCTGGATGATGCTTGG.............................................................................................2412.002.001.00----------------------------1.00------------------------
........................................................................ACCCGGAGGCTGGATGATGCTT...............................................................................................2212.002.00-------------2.00----------------------------------------
.......................CAGTGGAGGGAGCTCAGTGACCTCGAGTCT........................................................................................................................................302.000.00--------2.00---------------------------------------------
........................................................................ACCCGGAGGCTGGATGATGCCTGG.............................................................................................242.000.00------2.00-----------------------------------------------
.......................................................................................................................AAGCTCCCTGCCTCCTGTAGA.................................................212.000.002.00-----------------------------------------------------
......................................................................................................................TAAGCTCCCTGCCTCCTGTAG..................................................2112.002.00--------------------------------1.00--------------1.00------
........................................................................ACCCGGAGGCTGGATGATGCTCGGG............................................................................................252.000.00-----------------2.00------------------------------------
........................................................................ACCCGGAGGCTGGATGATG..................................................................................................1911.001.00-------1.00----------------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGCTTG..............................................................................................2411.001.00-----1.00------------------------------------------------
.........................................................................CCCGGAGGCTGGATGATGCTTGGGGGAT........................................................................................281.000.00--------------------------------------------------1.00---
..........................................................................CCGGAGGCTGGATGATGCTTGG.............................................................................................2211.001.00-------1.00----------------------------------------------
......................................................................................................................TAAGCTCCCTGCCTCCTGTCA..................................................211.000.00----------------1.00-------------------------------------
........................................................................ACCCGGAGGCTGGATGATGCTTGGC............................................................................................2511.002.00------1.00-----------------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGCTTGGG............................................................................................2611.001.00-------------------------------------------1.00----------
.......................................................................TACCCGGAGGCTGGATGAAT..................................................................................................201.000.00-------------------1.00----------------------------------
........................................................................ACCCGGAGGCTGGATGATGCTTGGA............................................................................................2511.002.00-1.00----------------------------------------------------
.....................................................GGCTGGGACCTGGTGGCGGA....................................................................................................................201.000.00--------------------------------------------1.00---------
..............................................................................................GGGGGAAAGTGTGAACTAC............................................................................191.000.00-------------------------------------1.00----------------
...................................................................................................................AGCTAAGCTCCCTGCCTCCTG.....................................................2111.001.00---------------------------------------------1.00--------
......................................................................................................................TAAGCTCCCTGCCTCCTGTAA..................................................211.000.00----------------1.00-------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGCTTA..............................................................................................2411.002.001.00-----------------------------------------------------
.......................CAGTGGAGGGAGCTCAGTG...................................................................................................................................................1911.001.00--------------1.00---------------------------------------
..........TATCAGCCAGCCTCAGTGGAGGGAGCCCAG.....................................................................................................................................................301.000.00----------------------------1.00-------------------------
............................................................................................................................................................CCAGACCGTGGGGTACCCCTGTGTGGTGCGC..3111.001.00--------------1.00---------------------------------------
........................................................................ACCCGGAGGCTGGATGATGCTTGGG............................................................................................2511.001.00-----------------------------------1.00------------------
.......................................................................TACCCGGAGGCTGGATGATGCTCGG.............................................................................................2511.0013.00------1.00-----------------------------------------------
.......................................................................TACCCGGAGGCTGGATGATGA.................................................................................................211.000.00---------1.00--------------------------------------------
......................................................................................................................TAAGCTCCCTGCCTCCTGCAG..................................................211.000.00------------1.00-----------------------------------------
.........................................................................CCCGGAGGCTGGATGATGCTTGGGGGT.........................................................................................271.000.00-----1.00------------------------------------------------
..................................................GTGGGCTGGGACCTGGTGGGTTACCCGGAGGCTGGATGATGCTTGGGGGAAAGTGTGAACAACTCAGCTAAGCTCCCTGC...........................................................8011.001.00------------------------------------------------1.00-----
..............................................CGAGGTGGGCTGGGAC...............................................................................................................................1620.500.50---------------------0.50--------------------------------
...................................CTCAGTGACCTCGAG...........................................................................................................................................1540.500.50----------------------------------------------------0.250.25
............TCAGCCAGCCTCAGTGG................................................................................................................................................................1730.330.33---------------------------------------------------0.33--

Antisense strand
ACACCATTGGTATCAGCCAGCCTCAGTGGAGGGAGCTCAGTGACCTCGAGGTGGGCTGGGACCTGGTGGGTTACCCGGAGGCTGGATGATGCTTGGGGGAAAGTGTGAACAACTCAGCTAAGCTCCCTGCCTCCTGTAGTCTGCTCGCCAATTCTGCCAGACCGTGGGGTACCCCTGTGTGGTGCGCCC
...................................................................((....)).((((((.((..((.((((((..((...((....))..))..)))))))))).)))))).......................................................
..................................................................67......................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189787SRR029125(GSM416754)
U2OS. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR040040(GSM532925)
G612N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR189785SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
...............................................................................GGCTGGATGATGCTTGGGGGAA........................................................................................ 2211.001.00----------------------------------1.00-------------------
...................................................................................GGATGATGCTTGGGGGT......................................................................................... 171.000.00------------------------------1.00-----------------------