ID: uc002qlt.9
GENE: U2AF2(9)
chr19:56180486-56180859+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(5)
AGO2.ip 		(1)
AGO3.ip 		(10)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(51)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(6)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(22)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AGAAGCTGCTGGTCCAGAGGGCGAGTGTGGGAGCCAAGAATGCCACGCTGGTGAGCCCCCCGGCACGTCATCTTCCATTGGCTTGAGGGACCCTGGGGGTGGGAGGGGCTGGCTAGTAGGGGACAAGTGTTCCTGATCTTTCTCCCAGCTTTCATGGGAAGGCATTTGGGGGGCATTCAGTGCAGTGTTGGGGAGTCGGGCTTTAGGTGTTGGAAGTGGAGAGATGGCCTTTCCCCTGGGGGGGCATGTGAGGGGCCTAGGCTTGAGCAGAGGGAGACTGGGTCTGGGCCCCCTGTGACGCCGCTGCCTCCCCTGGCCCCACAGAGCACCATCAATCAGACGCCTGTGACCCTGCAAGTGCCGGGCTTGATGAG
........................................................................................................................................................................................................................................................((.((((((.(((...((((((.((....))(((((.((....))...))).)).)))).)).))))))))).))...................................................
.......................................................................................................................................................................................................................................................248.........................................................................324................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029127(GSM416756)
A549. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR029128(GSM416757)
H520. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR029129(GSM416758)
SW480. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR038863(GSM458546)
MM603. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040014(GSM532899)
G623N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		GSM532880(GSM532880)
G659T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGG.....................................................................................................23169.0069.0029.00-4.002.00------1.001.00--2.00-1.002.00--3.001.001.00--1.001.00-1.00-3.001.001.00----1.00---1.00-1.00--1.00-1.00----1.00--------1.00----1.00--1.00-----1.001.00-------------1.00--1.00------------------1.00--
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAG......................................................................................................22160.0060.0028.002.00-2.003.00-1.00-1.00-2.00---1.00-1.003.001.003.001.001.00---1.00--------------1.00--1.00------1.00-1.00---------------1.00-----------1.00-1.00------------1.00----1.00---------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGA.......................................................................................................21149.0049.0014.005.003.003.005.00-4.00-3.001.00---1.00--1.00----1.00--1.001.00------1.00----------------------1.00-------------------------1.00--------1.00------------------1.001.00-----
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGT....................................................................................................24126.0069.0019.002.004.00------------------------------------------------------------------------------------------1.00----------------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAGA.......................................................................................................23119.0019.00-2.001.002.00--1.00-1.002.001.00------------2.001.00------1.00-------------------1.00------1.00----------------------------1.00---------------1.00-1.00----------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGA.....................................................................................................23116.0060.007.00-----2.00--1.001.00------------------------------1.00-------------------------------1.001.00------------------------------------1.00---1.00
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAG........................................................................................................20116.0016.001.001.00--1.00----2.00-1.00---2.00--2.00---------1.00------1.00--1.00-------------1.00------------------------------1.00-----------------1.00--------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAG........................................................................................................22111.0011.002.00--2.00-----2.00---2.00-----1.00------1.00-------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGT.....................................................................................................23110.0060.002.00---------1.00--1.001.00-------2.00------1.00------------------------------1.00-----------1.00-------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGG....................................................................................................2419.009.006.00-------------1.00-------1.00--------------------------------------------------------1.00------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGA...................................................................................................2517.007.002.00----------5.00--------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGT...................................................................................................2517.009.003.00-------2.00-------1.00------------------------------------------------1.00--------------------------------------------------
.................AGGGCGAGTGTGGGAGCCA..................................................................................................................................................................................................................................................................................................................................................1915.005.00--5.00-----------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAGAGT.....................................................................................................2515.001.002.00------------1.00-------------------1.00-----------------------------------------1.00----------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGATC...................................................................................................2515.0060.00-------5.00------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAA......................................................................................................2214.0049.00-----------------------1.00-----1.00-----------------------------------------1.00----------------1.00---------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAATC....................................................................................................2414.0049.00-------4.00------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGA....................................................................................................2414.0069.00-1.00----1.00---1.00-------------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGTA..................................................................................................2614.009.004.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGTAT..................................................................................................2614.0069.003.00-------------------------------------------------1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGATT...................................................................................................2513.0060.003.00-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................GCCTGTGACCCTGCAAGTGCCG...........2212.002.00-----------------------------------------------2.00--------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCA.........................................................................................................1912.002.00---1.00------------------------------------1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGC..........................................................................................................1812.002.00---1.00-----------------------------------------------------------1.00----------------------------------------------------
............................GGGAGCCAAGAATGCCACG.......................................................................................................................................................................................................................................................................................................................................1912.002.00--------------------------------------------------------------------------------------------------------1.00--1.00--------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGTA...................................................................................................2512.0069.002.00-------------------------------------------------------------------------------------------------------------------
..AAGCTGCTGGTCCAGAGGGCGAGCG...........................................................................................................................................................................................................................................................................................................................................................252.000.00------------2.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGAT....................................................................................................2412.0060.00-2.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAT......................................................................................................2212.0049.00------------------------------------2.00-------------------------------------------------------------------------------
....GCTGCTGGTCCAGAGGGCG...............................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................CGCTGCCTCCCCTGGCCCCACA...................................................2211.001.00--------------------------------------1.00-----------------------------------------------------------------------------
..AAGCTGCTGGTCCAGAGGGCGAGTGTGGG.......................................................................................................................................................................................................................................................................................................................................................2911.001.00------------1.00-------------------------------------------------------------------------------------------------------
..........................GTGGGAGCCAAGAATGCC..........................................................................................................................................................................................................................................................................................................................................1811.001.00---------------1.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCGGAG......................................................................................................2211.002.00--------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGAG...................................................................................................2511.0069.001.00-------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAGAA......................................................................................................2411.0019.00----------------1.00---------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAGAT......................................................................................................2411.0019.00---------------------1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGAG..................................................................................................2611.001.00-------------------------------------------------------------------------------------------------1.00------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGTT..................................................................................................2611.009.00---1.00----------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................GAGGGAGACTGGGTCTGGG......................................................................................1911.001.00-------------------------------------------------1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGAGA.................................................................................................2711.001.00------------------------------------------------------------------------------------------------------1.00-------------
...AGCTGCTGGTCCAGAGGGCGAGCG...........................................................................................................................................................................................................................................................................................................................................................241.000.00-----1.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................AGCACCATCAATCAGACGC...............................1911.001.00---------------------------------------------------------------------------------------------------1.00----------------
.............................................................................................................TGGCTAGTAGGGGACAAGTGTTC..................................................................................................................................................................................................................................................2311.001.00------------------------------------------1.00-------------------------------------------------------------------------
..AAGCTGCTGGTCCAGAGGG.................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------1.00-------------------------------------
..........GGTCCAGAGGGCGAGTGTGGGAGCC...................................................................................................................................................................................................................................................................................................................................................2511.001.00-----1.00--------------------------------------------------------------------------------------------------------------
.....................CGAGTGTGGGAGCCAAGAATGCCA.........................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------------------------------1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGAT..................................................................................................2611.007.001.00-------------------------------------------------------------------------------------------------------------------
.............CCAGAGGGCGAGTGTGGGA......................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------------------1.00-----------------
....................................................................................................................................................................................................................................................................................................................................AGCACCATCAATCAGACGCCT.............................2111.001.00---------------------------1.00----------------------------------------------------------------------------------------
...............AGAGGGCGAGTGTGGGAG.....................................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------------1.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................GAGGGGCCTAGGCTTGAGC..........................................................................................................1911.001.00--------------------------------------------------------1.00-----------------------------------------------------------
..............................GAGCCAAGAATGCCACGCTGAG..................................................................................................................................................................................................................................................................................................................................221.000.00------------------------------------------------------------------------------------------------------------------1.00-
................................................................................................................................................................................................................................................................................................................................................CAGACGCCTGTGACCCTG....................1811.001.00------------------------------------------------------------------1.00-------------------------------------------------
.............CCAGAGGGCGAGTGTGGGAGCCAAGAATGCCACG.......................................................................................................................................................................................................................................................................................................................................3411.001.00------------------------------------------------------------------------------------1.00-------------------------------
...AGCTGCTGGTCCAGAGGGCGAGTGTGGGAGCC...................................................................................................................................................................................................................................................................................................................................................3211.001.00------------1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TTAGGTGTTGGAAGTGGAGAGATGGCCT................................................................................................................................................2811.001.00---------------1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................AATCAGACGCCTGTGACCCTG....................2111.001.00----------------------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAAAA....................................................................................................2411.0049.00---------------------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TGGGTCTGGGCCCCCCAAG.............................................................................191.000.00---------------------------------------1.00----------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................CAGACGCCTGTGACCCTGCAAGTGCCGGGC........3011.001.00----------------------------------------------------------------------------------------------------------------1.00---
............TCCAGAGGGCGAGTGTGGGATT....................................................................................................................................................................................................................................................................................................................................................221.000.00---------------------------------------------------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................................................................................CTTGAGCAGAGGGAGACTGGGT...........................................................................................2211.001.00---------------------------------1.00----------------------------------------------------------------------------------
..AAGCTGCTGGTCCAGAGGGCGAGTGCGGG.......................................................................................................................................................................................................................................................................................................................................................291.000.00-----1.00--------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGGA..................................................................................................2611.009.001.00-------------------------------------------------------------------------------------------------------------------
...............................AGCCAAGAATGCCACGCTGAGCA................................................................................................................................................................................................................................................................................................................................231.000.00-----------------------------------------------------------1.00--------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGAA...................................................................................................2511.0069.00-1.00------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................GGGGCATTCAGTGCAGAT...........................................................................................................................................................................................181.000.00--------------------------------------------1.00-----------------------------------------------------------------------
............TCCAGAGGGCGAGTGTGGGAG.....................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGTTAT..................................................................................................2611.0060.00-1.00------------------------------------------------------------------------------------------------------------------
......TGCTGGTCCAGAGGGCGAGTGCGGG.......................................................................................................................................................................................................................................................................................................................................................251.000.00-----1.00--------------------------------------------------------------------------------------------------------------
..AAGCTGCTGGTCCAGAGGGCGAGTGGGG........................................................................................................................................................................................................................................................................................................................................................281.000.00-----1.00--------------------------------------------------------------------------------------------------------------
................GAGGGCGAGTGTGGGAGCCAA.................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------1.00------------------------------------------------------
...............................................................................................................................................................................TTCAGTGCAGTGTTGATGT....................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------------------1.00---------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGAA..................................................................................................2611.007.001.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGAA....................................................................................................2411.0060.001.00-------------------------------------------------------------------------------------------------------------------
..........GGTCCAGAGGGCGAGTGTGGGAG.....................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------------------------------------------------1.00----------------------------------------------
..AAGCTGCTGGTCCAGAGGGCGAGC............................................................................................................................................................................................................................................................................................................................................................241.000.00------------1.00-------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................GAGCACCATCAATCAGACGCCTGTGACCCTG....................3111.001.00---------------------------------------1.00----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................AGCACCATCAATCAGACGCCTGTGACCCCGC...................311.000.00-----1.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................GGAGGGGCTGGCTAGTAGAG.............................................................................................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------------------1.00--------------------------
....................GCGAGTGTGGGAGCCAAGAATGC...........................................................................................................................................................................................................................................................................................................................................2311.001.00---------------1.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGTTAT.................................................................................................2711.0069.001.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGC.....................................................................................................2311.0060.00------------------------------------------------1.00-------------------------------------------------------------------
.................................................................................................................................................................................CAGTGCAGTGTTGGGCGGG..................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------------1.00-----------------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAGAGGTA...................................................................................................271.000.00-----------------------------1.00--------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGGAGA.......................................................................................................2111.001.00---1.00----------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................TAGGCTTGAGCAGAGGGAGACTGT.............................................................................................241.000.00------------------------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................CATCAATCAGACGCCTGTG..........................1911.001.00----------------------------------------------------------------1.00---------------------------------------------------
....................................................................................................................................................................................................CGGGCTTTAGGTGTTGGAAGTGGAGAG.......................................................................................................................................................2711.001.00-------------------------------------------------------------------------------------1.00------------------------------
............................................................................................................................................................................................................................................................................................................CCGCTGCCTCCCCTGGCC........................................................1811.001.00--------------------------------------------------------------------------------------1.00-----------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGGGAGACTGG.............................................................................................3111.001.00------------------1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................AAGTGCCGGGCTTGATGAGCAA221.000.00-------------------------------------1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAAA.....................................................................................................2311.0049.00------------------------------------------------------------------------------------------------------------1.00-------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAGCAGAGTTT...................................................................................................2511.0060.00-1.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................AGGGGCCTAGGCTTGAG...........................................................................................................1711.001.00----------------------------1.00---------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................TGAGGGGCCTAGGCTTGAGCAGAG......................................................................................................2411.001.00------------------------------------------------------1.00-------------------------------------------------------------
.............................................................................................................................................................................................................GGTGTTGGAAGTGGA..........................................................................................................................................................1590.110.11------------------0.11-------------------------------------------------------------------------------------------------

Antisense strand
AGAAGCTGCTGGTCCAGAGGGCGAGTGTGGGAGCCAAGAATGCCACGCTGGTGAGCCCCCCGGCACGTCATCTTCCATTGGCTTGAGGGACCCTGGGGGTGGGAGGGGCTGGCTAGTAGGGGACAAGTGTTCCTGATCTTTCTCCCAGCTTTCATGGGAAGGCATTTGGGGGGCATTCAGTGCAGTGTTGGGGAGTCGGGCTTTAGGTGTTGGAAGTGGAGAGATGGCCTTTCCCCTGGGGGGGCATGTGAGGGGCCTAGGCTTGAGCAGAGGGAGACTGGGTCTGGGCCCCCTGTGACGCCGCTGCCTCCCCTGGCCCCACAGAGCACCATCAATCAGACGCCTGTGACCCTGCAAGTGCCGGGCTTGATGAG
........................................................................................................................................................................................................................................................((.((((((.(((...((((((.((....))(((((.((....))...))).)).)))).)).))))))))).))...................................................
.......................................................................................................................................................................................................................................................248.........................................................................324................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029127(GSM416756)
A549. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR029128(GSM416757)
H520. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR029129(GSM416758)
SW480. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR038863(GSM458546)
MM603. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040014(GSM532899)
G623N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		GSM532880(GSM532880)
G659T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
.......................................................................CTTCCATTGGCTTGAGTAC............................................................................................................................................................................................................................................................................................ 192.000.00--------------------------1.00--------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................GCTGCCTCCCCTGGCCCCATCA.................................................. 221.000.00------------1.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................CCCCTGGGGGGGCATGCC............................................................................................................................ 181.000.00----1.00---------------------------------------------------------------------------------------------------------------
.......................................................................CTTCCATTGGCTTGAGTACG........................................................................................................................................................................................................................................................................................... 201.000.00----------------------------------------------1.00---------------------------------------------------------------------
................................................................................................................................GTTCCTGATCTTTCTCAT.................................................................................................................................................................................................................................... 181.000.00---------------------------1.00----------------------------------------------------------------------------------------