ID: uc002pkp.4
GENE: BCAT2(4)
chr19:49300230-49300497-


(3)
AGO2.ip
(2)
AGO3.ip
(3)
B-CELL
(2)
BRAIN
(9)
BREAST
(13)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(1)
KIDNEY
(4)
LIVER
(1)
OTHER
(21)
SKIN

Sense strand
CGAGGTGGGAACCATGAACATCTTTGTCTACTGGACCCACGAAGATGGGGGTAAGCCCACCCATGACCCAGCCCGAACCCTGGTGGAAGTGGGTGGCACCATCATTCCTGGCAGGTTACAGGCCCCAGGGATTCTGGGATGGGGGAAGGGGGTGGCTCTTAAGACGGCGGTGCTAGGGGGTGAGAGGTAACATCTTCCACCCCTTACACCTGCCCTAGTGCTGGAGCTGGTGACGCCCCCGCTGAATGGTGTTATCCTGCCTGGAGTG
.....................................................................................................................................................................(((((((.(((((((((.((((......))))))))))))))))).)))......................................................
.............................................................................................................................................................158.........................................................218................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189784SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
TAX577744(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR040010(GSM532895)
G529N. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577588(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR189787RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
TAX577741(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR343335SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAG..................................................23121.0021.003.002.00-1.001.00-1.001.00-1.00-2.00--1.00--1.00--1.00----------------------1.00--1.00--1.00--1.00----1.00-------1.00-----
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTA...................................................22115.0015.00--1.00-1.00-----2.00------1.00-------1.00-------1.00--1.00---1.00-------1.00-1.00-----1.00--1.00-1.00----1.00----
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAA..................................................2317.0015.00-----3.00---1.00------1.00----------------------------1.00-------1.00-----------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTT...................................................2215.001.00---1.00----------1.00--------1.00-------1.00------1.00--------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAGT.................................................2415.005.001.00-1.00---------------------------1.00--------------------1.00-----------------1.00-
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAT..................................................2315.0015.002.00-----------------1.00-------1.00----------------------------1.00---------------
.......................................................................................................................................................................CGGTGCTAGGGGGTGA.....................................................................................1613.003.00-3.00---------------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAGA.................................................2413.0021.00---------------------------------------1.00--1.00-------------------1.00--------
......................TTTGTCTACTGGACCCACGAAGATGG............................................................................................................................................................................................................................2612.002.00-------------2.00---------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCC.....................................................2012.002.00----------------------------1.00------1.00-----------------------------------
.....................................................................................................................................................................................................CACCCCTTACACCTGCCCTATA.................................................222.000.00------2.00----------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCCA...................................................2212.002.00-------------------2.00---------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCT....................................................2111.001.00-----------------------------------------1.00-----------------------------
....................TCTTTGTCTACTGGACCCATT...................................................................................................................................................................................................................................211.000.00----1.00------------------------------------------------------------------
............................................................................................................................................................................................................................CTGGAGCTGGTGACGCCCCCGCTGAATGGTGC................321.000.00---------------1.00-------------------------------------------------------
........................................................................................................................................GGATGGGGGAAGGGGACC..................................................................................................................181.000.00-------------------------------------------------------------------1.00---
............................................................................................................................................GGGGGAAGGGGGTGGAAAA.............................................................................................................191.000.001.00----------------------------------------------------------------------
....GTGGGAACCATGAACTCTG.....................................................................................................................................................................................................................................................191.000.00--------------------------------1.00--------------------------------------
..............TGAACATCTTTGTCTACTGG..........................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------1.00------
...........................................................................................................................................................................................TAACATCTTCCACCCCTTACACCTGCCCCAG..................................................311.000.001.00----------------------------------------------------------------------
............................................................................................................................................................................................................................CTGGAGCTGGTGACGCCCCCGC..........................2211.001.00---------------------------1.00-------------------------------------------
..........................................................................................................................................ATGGGGGAAGGGGGTGTTTC..............................................................................................................201.000.00---------------1.00-------------------------------------------------------
.......................TTGTCTACTGGACCCACGAAGATGGGG..........................................................................................................................................................................................................................2711.001.00------------------------1.00----------------------------------------------
...........................................................................AACCCTGGTGGAAGTGGG...............................................................................................................................................................................1811.001.00----------------------------------1.00------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTACA.................................................2411.0015.00---------------------1.00-------------------------------------------------
....................................................................................................................................................................CGGCGGTGCTAGGGGGTGAGAGTT................................................................................241.000.00---------------------------------------------------------------1.00-------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCATT..................................................2311.002.00--1.00--------------------------------------------------------------------
.............................................................................................................................................................................TAGGGGGTGAGAGGTACC.............................................................................181.000.00-------------------------------------1.00---------------------------------
.GAGGTGGGAACCATGAA..........................................................................................................................................................................................................................................................1711.001.00-----------------------------1.00-----------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTTA..................................................2311.001.00---1.00-------------------------------------------------------------------
...................ATCTTTGTCTACTGGACCCACGAAG................................................................................................................................................................................................................................2511.001.00--------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................CACCCCTTACACCTGCCCCA...................................................201.000.00----------------------------------------------------------1.00------------
...................ATCTTTGTCTACTGGACCCACGAAGATGGGG..........................................................................................................................................................................................................................3111.001.00----------------------1.00------------------------------------------------
................................................................................................................................................................................................TCTTCCACCCCTTACACCTGC.......................................................2111.001.00--1.00--------------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTTT..................................................2311.001.00------------------1.00----------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCGA...................................................2211.002.001.00----------------------------------------------------------------------
.............................ACTGGACCCACGAAGAT..............................................................................................................................................................................................................................1711.001.00--------1.00--------------------------------------------------------------
....................................................................................................................................................................................................CCACCCCTTACACCTGCCCCTT..................................................221.000.001.00----------------------------------------------------------------------
..................................................................................................................................................................GACGGCGGTGCTAGGGGGTGA.....................................................................................2111.001.00-------1.00---------------------------------------------------------------
.......................TTGTCTACTGGACCCACGAAGATGG............................................................................................................................................................................................................................2511.001.00--------------------------------------------1.00--------------------------
.....................CTTTGTCTACTGGACCCACGAAGATG.............................................................................................................................................................................................................................2611.001.00----------------1.00------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCCAG..................................................2311.002.00-----------------------------------------------1.00-----------------------
....................................................................................................................................................................................................CCACCCCTTACACCTGCCCTAG..................................................2211.001.001.00----------------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCATA..................................................2311.002.00------------------------------------------------------------1.00----------
...........................CTACTGGACCCACGAAGATGG............................................................................................................................................................................................................................2111.001.00------------------------------------------------------1.00----------------
....................................CCACGAAGATGGGGGT........................................................................................................................................................................................................................1620.500.50--------------------0.50--------------------------------------------------
.................................................................................................................................................................................................................................................CTGAATGGTGTTATC............1570.140.14--0.14--------------------------------------------------------------------
......................................ACGAAGATGGGGGT........................................................................................................................................................................................................................1490.110.11----------------------------------------------------------------------0.11

Antisense strand
CGAGGTGGGAACCATGAACATCTTTGTCTACTGGACCCACGAAGATGGGGGTAAGCCCACCCATGACCCAGCCCGAACCCTGGTGGAAGTGGGTGGCACCATCATTCCTGGCAGGTTACAGGCCCCAGGGATTCTGGGATGGGGGAAGGGGGTGGCTCTTAAGACGGCGGTGCTAGGGGGTGAGAGGTAACATCTTCCACCCCTTACACCTGCCCTAGTGCTGGAGCTGGTGACGCCCCCGCTGAATGGTGTTATCCTGCCTGGAGTG
.....................................................................................................................................................................(((((((.(((((((((.((((......))))))))))))))))).)))......................................................
.............................................................................................................................................................158.........................................................218................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189784SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
TAX577744(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR040010(GSM532895)
G529N. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577588(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR189787RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
TAX577741(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR343335SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................TTCCTGGCAGGTTACACGGC................................................................................................................................................ 203.000.00------------2.00-------------------------------------------------------1.00--
.........................................................................................................................................................................................GGTAACATCTTCCAC.................................................................... 1570.140.14--0.14--------------------------------------------------------------------