ID: uc002oxj.4
GENE: SMG9(4)
chr19:44238598-44238847-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(22)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TACAGTTGGTAAGTCCATGGGTTGGTATCTGAGAGGATTATCTCTGAATTCTCTGAAATTGTGAGAAACATGGTGTGTATATGGTATTTTTCTGAGCATGGCTGTAGCTTTCATCAGAATCTCAAAGGAAGCCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTGCAAGAGCAACAGCCACTCACCCCAAACCCCAAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCC
...................................................................................................................................................((((...(((((((..((((.....((....)))))))))))))...))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189787SRR189786SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040032(GSM532917)
G603N. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR343335
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGC..................................................................................23116.0016.003.00---2.00-2.00---1.00-1.001.001.00---------1.00---------1.00-1.00------------1.00---------1.00---
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTG...................................................................................22113.0013.00-6.00--2.00--1.00--1.00----1.00----1.00--------1.00---------------------------------
..................................................................................................................................................................................GCCACTCACCCCAAACCCCAAG..................................................22112.0012.00----1.004.00-----1.00---------------1.00-----------1.00--1.00----1.00--------1.00---1.00--
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTGCA.................................................................................23111.0011.00-3.00-------3.00--------2.00-------1.001.00-----------------1.00-----------------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTGC..................................................................................2218.008.001.00---------1.00------1.00--1.00-------1.00--1.00--------1.00--------------1.00-------
...................................................................................................................................CCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTGCAAGAGCAACAGCCACTCACCCCAAACCCC.....................................................6618.008.00--8.00------------------------------------------------------------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTG...................................................................................2116.006.004.00-----2.00--------------------------------------------------------
.................................................................................................................................................................................AGCCACTCACCCCAAACCCCAAG..................................................2314.004.00-----------------------1.00----1.00----------------------1.00-----1.00-----
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAGA.................................................2214.001.00--------------1.00--1.00---2.00-----------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGCA.................................................................................2413.003.003.00--------------------------------------------------------------
..........................................................................................................................................................................GAGCAACAGCCACTCACCCCAAACCCCAAG..................................................3012.002.00-----------------------1.00--------------1.00------------------------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGCGC..................................................................................222.000.00------------1.00--------------------1.00-----------------------------
...............................................................................................................................................................................ACAGCCACTCACCCCAAACCCCAAGGTTCCGC...........................................322.000.00--------2.00------------------------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCTAAG..................................................212.000.00---2.00-----------------------------------------------------------
....................................................................................................................................................................................CACTCACCCCAAACCCCAAGAT................................................222.000.00-------------------2.00-------------------------------------------
..................................................................................................................................................................................GCCACTCACCCCAAACCCCAAGA.................................................2312.0012.00-------2.00-------------------------------------------------------
..............CCATGGGTTGGTATCTGAGAG.......................................................................................................................................................................................................................2111.001.00-------------------------------------1.00-------------------------
..................................................................................................TGGCTGTAGCTTTCATCAGAATCTCAAAG...........................................................................................................................2911.001.00----------------------------------------------------1.00----------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAG.....................................................................................2011.001.00---1.00-----------------------------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTAA..................................................................................2311.001.00----------------------1.00----------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAGT.................................................2211.001.00-----------------------------------1.00---------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAT..................................................211.000.00-------------1.00-------------------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTAG..................................................................................2311.001.00--------------------------------------------1.00------------------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTGA..................................................................................2211.006.00---------------1.00-----------------------------------------------
................................................................................................................................................................................CAGCCACTCACCCCAAACCCCAAG..................................................2411.001.00-----------1.00---------------------------------------------------
.................................................................................................ATGGCTGTAGCTTTCATCAGAATCTCA..............................................................................................................................2711.001.00----------------1.00----------------------------------------------
...................................................................................GTATTTTTCTGAGCATGGCTGTAGCTTTCATCAGAATCTCAAAGGAAGCCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTG...................................................................................8411.001.00-------------------------------------------1.00-------------------
.....................................................................................................................................................................................ACTCACCCCAAACCCCAAGTT................................................211.000.00-----------------------------------------1.00---------------------
......................................................................................................................................................................................CTCACCCCAAACCCCAAGATT...............................................211.000.00-------------------------1.00-------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGT....................................................................................2111.001.00------------------------1.00--------------------------------------
....................GTTGGTATCTGAGAGTAGA...................................................................................................................................................................................................................191.000.00-----------------------------------------------------1.00---------
.......................................................................................................................................................ACCTGGGGTGCAAGTGCAAGAGCA...........................................................................2411.001.00----------------------1.00----------------------------------------
....................................................................................................................................................................................CACTCACCCCAAACCCCCCGA.................................................211.000.00----------------------------------------------------------1.00----
.......GGTAAGTCCATGGGTTGGTATCT............................................................................................................................................................................................................................2311.001.00--------------------------------1.00------------------------------
...AGTTGGTAAGTCCATGGGC....................................................................................................................................................................................................................................191.000.00--------1.00------------------------------------------------------
................................................................................................................................................CTGTGGGACCTGGGGTGCAAGTGCC.................................................................................251.000.00------------1.00--------------------------------------------------
.......................................................AAATTGTGAGAAACATGGTGTGTATA.........................................................................................................................................................................2611.001.00------------------------------------------------------1.00--------
..............................................................................................AGCATGGCTGTAGCTTTCATCAG.....................................................................................................................................2311.001.00--------------------------------------------------1.00------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGCAT................................................................................2511.003.00-----------1.00---------------------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAG..................................................2111.001.00--------------------------1.00------------------------------------
.................................................................................TGGTATTTTTCTGAGCATGGC....................................................................................................................................................2111.001.00----------------1.00----------------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGT..................................................................................2311.0013.00------------------------------------------------1.00--------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAGC.................................................2211.001.00------------------------------1.00--------------------------------

Antisense strand
TACAGTTGGTAAGTCCATGGGTTGGTATCTGAGAGGATTATCTCTGAATTCTCTGAAATTGTGAGAAACATGGTGTGTATATGGTATTTTTCTGAGCATGGCTGTAGCTTTCATCAGAATCTCAAAGGAAGCCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTGCAAGAGCAACAGCCACTCACCCCAAACCCCAAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCC
...................................................................................................................................................((((...(((((((..((((.....((....)))))))))))))...))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189787SRR189786SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040032(GSM532917)
G603N. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR343335
.............................................................................................................................................................GGTGCAAGTGCAAGATGCG.......................................................................... 191.000.00---1.00-----------------------------------------------------------
......................................................................................................................................................................GCAAGAGCAACAGCCAGG.................................................................. 181.000.00-------------------------1.00-------------------------------------
..................................................................................................................................................................AAGTGCAAGAGCAACATT...................................................................... 181.000.00---1.00-----------------------------------------------------------
.....................................................................................................CTGTAGCTTTCATCAGAGTA................................................................................................................................. 201.000.00----------------------------------------------1.00----------------
.............................................................................................................................................................GGTGCAAGTGCAAGATTCC.......................................................................... 191.000.00---1.00-----------------------------------------------------------
................................................................................................CATGGCTGTAGCTTT........................................................................................................................................... 1550.400.40-------------------------------------------------------------0.200.20