ID: uc002oxj.3
GENE: SMG9(3)
chr19:44237836-44238085-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(5)
B-CELL 		(4)
BRAIN 		(8)
BREAST 		(29)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GGCAGAAATCAGACCTGACTCACTTCTGGGTCCCCAGCATTGCCCTACACAGAGCCTGGTGCTAAAGTGAAGTGAAGTTATATAAATATTTACACAGTGATCTGAACTCAGGGGTAACAACAGGTCTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTG
................................................................................................................................(((((((.((((((((.((((.....((...))..((((.....)))))))))).))).))).))))).))...................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR038863(GSM458546)
MM603. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189782SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189787SRR029130(GSM416759)
DLD2. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029126(GSM416755)
143B. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGT.......................................................................................................21134.0034.0021.005.00-------1.001.00-1.001.00-1.00----1.00-----1.00----------------------1.00-------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCT.....................................................................................................22121.0012.0018.00------------------------------------1.00---------1.00----1.00----------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCT.....................................................................................................23114.009.009.00--1.001.001.001.00------------------------------------1.00-------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTC......................................................................................................21112.0012.00-7.00--2.002.00----------1.00----------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTC......................................................................................................2219.009.001.00----1.00----1.00------2.001.001.00----1.00-----------------------1.00--------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCA.....................................................................................................2218.0012.003.00--2.00-----------1.00--1.00---1.00----------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAG........................................................................................................2028.008.003.00-----0.50--1.00---------------------------------------------0.50--0.500.500.50-0.50-0.50--0.50-
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCA.....................................................................................................2318.009.005.00--1.00------1.00---------------------------------1.00------------------------
.............................................................................................................................CTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAG..................................................7517.007.00--7.00------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAA....................................................................................................2316.0012.006.00--------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAG........................................................................................................1926.006.004.00----------0.50---------------1.00----------------------------0.50------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAT....................................................................................................2415.009.00---2.00------------------------------1.00----1.00-----1.00-----------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGT.......................................................................................................2015.005.003.00------------1.00----------------1.00--------------------------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGTCCAT...................................................................................................2315.005.005.00--------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAT....................................................................................................2313.0012.00--------------2.00------1.00-----------------------------------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGTCCATGT.................................................................................................252.000.002.00--------------------------------------------------------------------
..............................................................................................................................................................................CAGGGCCCGTCTCTTCCCACCC......................................................2212.002.002.00--------------------------------------------------------------------
.......................................................................................................................ACAGGTCTTTGGGGTGAGAAAGGG...........................................................................................................2412.002.00--------2.00------------------------------------------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAGT.................................................2212.002.00---------------------------------------------------1.00-1.00---------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCTTT...................................................................................................2412.0012.00------1.00----------------------------------1.00---------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGA.........................................................................................................1921.501.50-------------------0.50---------------------------------------------0.500.50--
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCTAA...................................................................................................2511.009.00--------------------------------------1.00------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCTCT...................................................................................................2511.009.00-----------1.00---------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCCTC...................................................................................................241.000.00-------1.00-------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTAA.....................................................................................................2311.0034.00---------1.00-----------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCTT....................................................................................................2311.0012.00-----------------------1.00---------------------------------------------
........TCAGACCTGACTCACTATA...............................................................................................................................................................................................................................191.000.00-------------------------------1.00-------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAACC..................................................................................................2611.009.00-------1.00-------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAAG...................................................................................................2411.0012.00----------------------------------------------1.00----------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCCATA..................................................................................................251.000.00----------------1.00----------------------------------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAG..................................................2111.001.00--------------------------------------------------1.00------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGT.......................................................................................................1911.001.00----------------------------------------1.00----------------------------
..................................................................................................GATCTGAACTCAGGGTACG.....................................................................................................................................191.000.00-----------------------------1.00---------------------------------------
......................................................................................................................................................................CTGCCTGACAGGGCCCGTCTCTTCCC..........................................................2611.001.00--------------------------------1.00------------------------------------
..............................................................................TATATAAATATTTACGTAA.........................................................................................................................................................191.000.00------1.00--------------------------------------------------------------
.........CAGACCTGACTCACTGGC...............................................................................................................................................................................................................................181.000.00-------------------------1.00-------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGA.........................................................................................................1821.001.00--------1.00------------------------------------------------------------
.....................................................................................................CTGAACTCAGGGGTAACAACA................................................................................................................................2111.001.00------------------------------------------1.00--------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAGC.................................................2211.001.00-----------1.00---------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCATA...................................................................................................2511.009.00----1.00----------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAAA.......................................................................................................2021.001.001.00--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAAC...................................................................................................2511.009.00----1.00----------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTAG.....................................................................................................2211.005.00------------------------------------------------------1.00--------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAA....................................................................................................2411.009.00-----------------------------------1.00---------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAAAA..................................................................................................2511.0012.00------------1.00--------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGAAT........................................................................................................2020.500.50-------------------------------------------------------------0.50-------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGACC.....................................................................................................2320.508.00-------0.50-------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGC.......................................................................................................2120.508.00-------0.50-------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGCC......................................................................................................2220.508.00--------------------0.50------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGACT.....................................................................................................2220.506.000.50--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGG...........................................................................................................1720.500.50---------------------------------------------------------0.50-----------
...............................................................................................................................TTGGGGTGAGAAAGGGG..........................................................................................................1740.250.25--------------------------------------------------------------------0.25
...............................................................................................................................TTGGGGTGAGAAAGGG...........................................................................................................1660.170.17------------0.17--------------------------------------------------------

Antisense strand
GGCAGAAATCAGACCTGACTCACTTCTGGGTCCCCAGCATTGCCCTACACAGAGCCTGGTGCTAAAGTGAAGTGAAGTTATATAAATATTTACACAGTGATCTGAACTCAGGGGTAACAACAGGTCTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTG
................................................................................................................................(((((((.((((((((.((((.....((...))..((((.....)))))))))).))).))).))))).))...................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR038863(GSM458546)
MM603. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189782SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189787SRR029130(GSM416759)
DLD2. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029126(GSM416755)
143B. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)
................................................................................................GTGATCTGAACTCAGGCCA....................................................................................................................................... 191.000.00---------------------------------1.00-----------------------------------
.................................................................................................................................................................................GGCCCGTCTCTTCCCAC........................................................ 1711.001.00----------------------------1.00----------------------------------------
...........................GGGTCCCCAGCATTGCCGTGG.......................................................................................................................................................................................................... 211.000.00------------------------------------1.00--------------------------------
...........................GGGTCCCCAGCATTGCCCTACACAG...................................................................................................................................................................................................... 2520.500.50---------------------------------------------------------------0.50-----