ID: uc002oam.6
GENE: HAUS5(6)
chr19:36108046-36108238+


(2)
AGO1.ip
(4)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(2)
BRAIN
(5)
BREAST
(33)
CELL-LINE
(1)
CERVIX
(3)
FIBROBLAST
(2)
HEART
(3)
HELA
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(16)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CCTTTGGATCCCTCACGTCGGCAGCTCTGGGCCTGGAGCCCGTGGTCCTGGTAAGAGTCCTGGTCATGGGAGAAGGGGCAGGGAGCCTGGAGTCAGGCAGATGCTAGGGTCCCCCTCAGGTCCCTTCCTCCTCTTCTCCCTAGCGTGATGTCCGAACAGCCTGCACCCTCCGGGCCCAGTTCCTGCAGAACCT
...................................................................(((((((((((.((((.(((((....))))).......((((.((......)).))))))))))))))))))).....................................................
............................................................61................................................................................143................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189787SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189785SRR037935(GSM510473)
293cand3. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR189783SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
GSM956925AGO2Paz8(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGT.................................................21135.0013.00-2.002.001.00-4.001.002.002.003.00-2.001.00-2.00-2.00---2.00------1.001.001.00--1.00----1.001.00-------1.00--1.00-----1.00-----------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAG..................................................20113.0013.00-2.001.002.00--3.00-----------1.00---------------1.001.00----1.001.00-------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGC...........................................................................................................2126.006.00---1.00------2.50------------------------------------------0.50------0.500.500.50------------0.50---
.................................................................ATGGGAGAAGGGGCAGGGAGCC..........................................................................................................2215.005.00---1.001.00--------------1.00-----------1.00-1.00---------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCT.........................................................................................................2313.003.00-----------------------------------------------1.00--1.00-------1.00--------------------
...........................................................................................................................CTTCCTCCTCTTCTCCTTAG..................................................203.000.00-3.00-----------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCCT........................................................................................................2412.005.002.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTACT......................................................................................................2612.003.002.00------------------------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGTAA...............................................2312.0013.00-----------------1.00---------------------1.00---------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCCTT.......................................................................................................262.000.002.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTTT.......................................................................................................2512.003.00-1.00----------------------------------------------1.00------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGA.................................................2112.0013.00-------------1.00----------------------------------------1.00------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTCT.......................................................................................................2512.003.002.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGA...........................................................................................................2122.001.50------------------------------------------0.50--------------------0.50---0.500.50----------
.................................................................ATGGGAGAAGGGGCAGGG..............................................................................................................1821.501.50-0.50--------------------0.50-------------------------------------0.50------------------
.................................................................ATGGGAGAAGGGGCAGGGAG............................................................................................................2021.501.50-----------------------------------------------------0.50------------0.50-------0.50----
................................................................CATGGGAGAAGGGGCAGGGAAAA..........................................................................................................231.000.00------------------------------1.00------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTAC.......................................................................................................2511.003.001.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCC.........................................................................................................2311.005.001.00------------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAAT...........................................................................................................221.000.00----------------------1.00--------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCAT........................................................................................................251.000.00----1.00--------------------------------------------------------------------------
...............................................................TCATGGGAGAAGGGGCAGGGAGCAGA........................................................................................................261.000.00---------------1.00---------------------------------------------------------------
...........................................................................................................................................................ACAGCCTGCACCCTCCGGGCCCAGTTCCTGCAG.....3311.001.00-----------------------------------------------------------1.00-------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTA........................................................................................................2411.003.00--------1.00----------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCAT.........................................................................................................2321.006.00-----------------0.50-----------------------------------------------0.50-------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCAAAT......................................................................................................2611.005.00-----------------------1.00-------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGTT................................................2211.0013.00---------------------------------------------------1.00---------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGCT................................................221.000.00----1.00--------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCAAA.......................................................................................................261.000.00--1.00----------------------------------------------------------------------------
........................................................................................................................TCCCTTCCTCCTCTTCTCCCTAGC.................................................2411.001.001.00------------------------------------------------------------------------------
..........................................................................................................................CCTTCCTCCTCTTCTCCCTAGTCA...............................................241.000.00------------------------------------1.00------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAAA...........................................................................................................2121.001.00-----------------0.50----------------------------------------------------0.50--------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGG.................................................2111.0013.00--1.00----------------------------------------------------------------------------
..........................................................................................................................................................AACAGCCTGCACCCTCCG.....................1811.001.00------------------1.00------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGTA................................................2211.0013.00-------------1.00-----------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCA.........................................................................................................2311.005.00---------------1.00---------------------------------------------------------------
........................................................................................................................TCCCTTCCTCCTCTTCTCCCTAG..................................................2311.001.00-1.00-----------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCAAT.......................................................................................................2511.005.00---------------------------------------------1.00---------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTTGT......................................................................................................2611.003.00-1.00-----------------------------------------------------------------------------
..................................................................................................................................................GATGTCCGAACAGCCTGCA............................1911.001.00-------------------------------------------1.00-----------------------------------
..................................................GTAAGAGTCCTGGTCATG.............................................................................................................................1811.001.00-------------------------1.00-----------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGA.............................................................................................................1921.001.00-------------------------------------------------------------0.50--0.50--------------
........................................................................................................................TCCCTTCCTCCTCTTCTCCCTAGAC................................................2511.001.001.00------------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCTT........................................................................................................251.000.00------------------------1.00------------------------------------------------------
.......ATCCCTCACGTCGGCAGCGC......................................................................................................................................................................201.000.00---------------------1.00---------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCATT.......................................................................................................261.000.00--------------------------1.00----------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCAT........................................................................................................2411.005.00--1.00----------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCTAAA......................................................................................................271.000.00----1.00--------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTT........................................................................................................2411.003.001.00------------------------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTATTT................................................221.000.00---------------------------------------------------------1.00---------------------
...........................TGGGCCTGGAGCCCGTGGTCCTGCGTG...........................................................................................................................................271.000.00-------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................CGGGCCCAGTTCCTGC.......1611.001.00--------------------------------------------1.00----------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTATA.................................................211.000.00-------1.00-----------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGAAAA........................................................................................................2420.501.50-----------------------------------------------------------------------------0.50-
.................................................................ATGGGAGAAGGGGCAGGGAAT...........................................................................................................2120.501.00---------------------------------------------------------------------0.50---------
.................................................................ATGGGAGAAGGGGCAGGGAGCAAAA.......................................................................................................2520.506.00-------------------------------------------------------------------------0.50-----
................................................................CATGGGAGAAGGGGCAGGGAG............................................................................................................2120.500.50------------------------------------------------------------------------0.50------
.................................................................ATGGGAGAAGGGGCAGGGAAAC..........................................................................................................2220.501.000.50------------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGG..............................................................................................................1920.500.50-----------------------------------------------------------------------0.50-------
.................................................................ATGGGAGAAGGGGCAGGGAGCAAAT.......................................................................................................2520.506.00----------------------------------------------------------------------------0.50--
................................................................CATGGGAGAAGGGGCAGGGAGCTCAT.......................................................................................................2620.500.500.50------------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGA...........................................................................................................2220.500.50------------0.50------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGC...........................................................................................................2220.500.50------------0.50------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAACCA.........................................................................................................2320.501.00-----------------------0.50-------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCAA.........................................................................................................2320.506.00------------------------------------------0.50------------------------------------

Antisense strand
CCTTTGGATCCCTCACGTCGGCAGCTCTGGGCCTGGAGCCCGTGGTCCTGGTAAGAGTCCTGGTCATGGGAGAAGGGGCAGGGAGCCTGGAGTCAGGCAGATGCTAGGGTCCCCCTCAGGTCCCTTCCTCCTCTTCTCCCTAGCGTGATGTCCGAACAGCCTGCACCCTCCGGGCCCAGTTCCTGCAGAACCT
...................................................................(((((((((((.((((.(((((....))))).......((((.((......)).))))))))))))))))))).....................................................
............................................................61................................................................................143................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189787SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189785SRR037935(GSM510473)
293cand3. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR189783SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
GSM956925AGO2Paz8(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................CTGCACCCTCCGGGCCCAACGT........... 221.000.00----------------------------------------------------1.00--------------------------
......................................................................................................................GGTCCCTTCCTCCTCTTCAA....................................................... 201.000.00--------------------------------------------------------1.00----------------------
.................................................................................GGAGCCTGGAGTCAGGACCT............................................................................................ 201.000.00---------------------1.00---------------------------------------------------------
.......................................................................................................................GTCCCTTCCTCCTCTTC......................................................... 1740.250.25------------------------------------------------------------------------------0.25