ID: uc002mwj.8
GENE: TRMT1(8)
chr19:13220766-13221021-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(10)
B-CELL
(6)
BRAIN
(5)
BREAST
(32)
CELL-LINE
(3)
HEART
(4)
HELA
(2)
OTHER
(1)
RRP40.ip
(10)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GTTTTTGTCCGTGTCTTCACCGGCCAGGCCAAGGTCAAGGCCTCAGCCAGGTCAGCCCGGGGGCAGAGAGCGGTGGTGGATTGAGAGAGGAGACAGGACCTTGCCCTGGGGGATCTGGGGCTTCTTAAGGGACAGAGCCAGTCTAAGGGAGGAGTTGGGGTGTCGTGGTCACGCTGGGAACTCGTGGCCACTGGTACCCCCCACAGCAAGCAGGCGCTGGTGTTCCAGTGTGTGGGCTGCGGGGCCTTCCACCTTC
.........................................................................................................................................................((.(((((((((((((((((.........))))))))).))))))))..))....................................................
.......................................................................................................................................................152...................................................206................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)
SRR189786SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR038857(GSM458540)
D20. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189784SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGC..................................................................................21123.0023.002.00-7.00-1.00-3.00--1.00-----1.002.00-----2.00-------------1.00--------------1.00--1.00--------------1.00------
......................................................................................................................................................................................................................CGCTGGTGTTCCAGTTG.........................1717.000.00-17.00--------------------------------------------------------------------------
........................................................................................................................CTTCTTAAGGGACAGGCCT.....................................................................................................................1915.000.00-----4.00-4.00------1.00---------1.001.00-----1.00--------------1.00--------------1.00------1.00-------
........................................................................................................................CTTCTTAAGGGACAGGCC......................................................................................................................1815.000.00-----2.00-2.00--4.00---1.00----1.00---1.001.00-------------1.00------------------1.00--1.00---------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGC..................................................................................22112.0012.007.00---1.00-1.00--------------------1.001.00-----------1.00-----------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACG...................................................................................2018.008.00---3.004.00-------------------------------------------1.00---------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCT.................................................................................2216.006.00--3.001.00---------2.00--------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGCAA................................................................................2414.0012.00---------------------2.00----2.00-------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCAC....................................................................................2014.004.001.00------------1.00---------------1.00-------------------1.00--------------------------
...........................................................................................................................................................TGGGGTGTCGTGGTCACGCTGGG..............................................................................2314.004.004.00---------------------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGA..................................................................................2213.003.00---------2.00--1.00---------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACG...................................................................................2113.003.00------1.00-----------1.00-------------------------------------1.00-------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCAT................................................................................2313.0023.003.00---------------------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGCA.................................................................................2313.0012.001.00--------------2.00------------------------------------------------------------
..................................................................................................................................................................................AACTCGTGGCCACTGGTACCCCCCA.....................................................2513.003.00---3.00------------------------------------------------------------------------
...........................................................................................................................................................TGGGGTGTCGTGGTCACGC..................................................................................1912.002.002.00---------------------------------------------------------------------------
..............................................................................GATTGAGAGAGGAGACACT...............................................................................................................................................................192.000.00--------2.00-------------------------------------------------------------------
..............................................................................................................................................CTAAGGGAGGAGTTGGGGTG..............................................................................................2012.002.00----2.00-----------------------------------------------------------------------
........................................................................................................................CTTCTTAAGGGACAGGC.......................................................................................................................172.000.00-------------------------1.00---------------1.00----------------------------------
.......................................................................................................................................................................................GTGGCCACTGGTACCCCCCACA...................................................2212.002.00--------2.00-------------------------------------------------------------------
...........................................................................................................................................................TGGGGTGTCGTGGTCACGCTGGGA.............................................................................2412.002.00-----------------1.00-----------------------------------------------1.00----------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGCT.................................................................................2312.002.00-----------1.00-------------------------------1.00--------------------------------
............................................................................................................................................................................................................AGCAAGCAGGCGCTGGTGTT................................2012.002.00------------2.00---------------------------------------------------------------
.......................................................................................................................................................................................................................GCTGGTGTTCCAGTGTGTGGGCTGCGGG.............2811.001.00---------------------------1.00------------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCAC....................................................................................1911.001.001.00---------------------------------------------------------------------------
........................................................................................................................CTTCTTAAGGGACAGCCCT.....................................................................................................................191.000.00----------------------------------------------------------------1.00-----------
........................................................................................................................................................................................TGGCCACTGGTACCCCCCACAGT.................................................231.000.00--------------------------------------------------------------1.00-------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCT.................................................................................2111.001.001.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................CAAGCAGGCGCTGGTCA.................................171.000.00-----------------------1.00----------------------------------------------------
....................................................................AGCGGTGGTGGATTGACTG.........................................................................................................................................................................191.000.00-------------------------------------1.00--------------------------------------
.......................................................................................................................................................GAGTTGGGGTGTCGTGGTA......................................................................................191.000.00---------------------------------------1.00------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCAA................................................................................2311.0023.00--------------1.00-------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCCCGC..................................................................................221.000.00----------------------------------------------------------1.00-----------------
........................................................................................................................CTTCTTAAGGGACAGTCCT.....................................................................................................................191.000.00----------------------------------------------------1.00-----------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCTGGA..............................................................................2411.001.00-----------------------------------1.00----------------------------------------
..TTTTGTCCGTGTCTTCACCGGCCAGGC...................................................................................................................................................................................................................................2711.001.00------1.00---------------------------------------------------------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCTGGGAACTCGTGGCCACTGGTACCCCCCA.....................................................4911.001.00----------------------------------------------------------------------1.00-----
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGC..................................................................................2011.001.001.00---------------------------------------------------------------------------
...............................................................................................................................................TAAGGGAGGAGTTGGGGTTGTT...........................................................................................221.000.00-----------------------------------------------------1.00----------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCA.....................................................................................1811.001.00-----------------------------------------------------------1.00----------------
...............................................................................................................................................................................GGGAACTCGTGGCCACTGGTACC..........................................................2311.001.00----------------------------------1.00-----------------------------------------
........................................................................................................................CTTCTTAAGGGACAGGA.......................................................................................................................171.000.00--------------------1.00-------------------------------------------------------
.....................................................................GCGGTGGTGGATTGAATAG........................................................................................................................................................................191.000.00---1.00------------------------------------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCAAGC..................................................................................2111.001.00--1.00-------------------------------------------------------------------------
....................................................................AGCGGTGGTGGATTGTTTC.........................................................................................................................................................................191.000.00---------------------------------1.00------------------------------------------
......................................................................................................................................................GGAGTTGGGGTGTCGTGGTA......................................................................................201.000.00------------------1.00---------------------------------------------------------
.............TCTTCACCGGCCAGGCCAA................................................................................................................................................................................................................................1911.001.00------------------------------------------1.00---------------------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCTGG...............................................................................2311.001.00--------------------------------------------1.00-------------------------------
.............................................................................................................................................................GGGTGTCGTGGTCACGCTGGGAACT..........................................................................2511.001.00-----------------1.00----------------------------------------------------------
..................................................................................................................................................................................AACTCGTGGCCACTGGTACCCCC.......................................................2311.001.00------------------------------1.00---------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGT..................................................................................2211.003.00---1.00------------------------------------------------------------------------
.....................................................................................................................................................................................TCGTGGCCACTGGTACCCCCCAT....................................................231.000.00-------------------------------------------------------1.00--------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCTT................................................................................2311.006.00------------------------------------------------------------------1.00---------
.......................................................................................................................................................GAGTTGGGGTGTCGTGGTCACG...................................................................................2211.001.00---------1.00------------------------------------------------------------------
.......................................................CCCGGGGGCAGAGAGCGGTGGTGGCCCG.............................................................................................................................................................................281.000.00-------------------------------------------------------------------1.00--------
.....................................................................................................................................................................................................CCCCCACAGCAAGCAGGC.........................................1820.500.50----------------------------0.50-----------------------------------------------
................................GGTCAAGGCCTCAGCCAG..............................................................................................................................................................................................................1830.330.33----------------0.33-----------------------------------------------------------
.......................................................................................................................................................................................................CCCACAGCAAGCAGGC.........................................16100.200.20----------------------------0.10--------------------------------------------0.10--
.......................................................................................................................................................................................................................................GTGGGCTGCGGGGCC..........15100.200.20--------------------------------------------------------------------------0.100.10
..................................................................AGAGCGGTGGTGGA................................................................................................................................................................................1490.110.11------------------------------------------------------------------------0.11---

Antisense strand
GTTTTTGTCCGTGTCTTCACCGGCCAGGCCAAGGTCAAGGCCTCAGCCAGGTCAGCCCGGGGGCAGAGAGCGGTGGTGGATTGAGAGAGGAGACAGGACCTTGCCCTGGGGGATCTGGGGCTTCTTAAGGGACAGAGCCAGTCTAAGGGAGGAGTTGGGGTGTCGTGGTCACGCTGGGAACTCGTGGCCACTGGTACCCCCCACAGCAAGCAGGCGCTGGTGTTCCAGTGTGTGGGCTGCGGGGCCTTCCACCTTC
.........................................................................................................................................................((.(((((((((((((((((.........))))))))).))))))))..))....................................................
.......................................................................................................................................................152...................................................206................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)
SRR189786SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR038857(GSM458540)
D20. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189784SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
.....................................................................................................................................................................................................CCCCCACAGCAAGCAACC......................................... 181.000.00--------------------------------1.00-------------------------------------------
..................................................................................................................................................GGGAGGAGTTGGGGTGGTCT.......................................................................................... 201.000.00--------------------------------------------------1.00-------------------------
........................................................CCGGGGGCAGAGAGCGA....................................................................................................................................................................................... 171.000.00---------------------------------------------1.00------------------------------
........................................................CCGGGGGCAGAGAGCGCGC..................................................................................................................................................................................... 191.000.00--------------------1.00-------------------------------------------------------
......................................................................................................GCCCTGGGGGATCTGGT......................................................................................................................................... 171.000.00-----------1.00----------------------------------------------------------------
...................................................................................................................................................................................................................AGGCGCTGGTGTTCCATTG.......................... 191.000.00-----------------------------------------------1.00----------------------------
...................................................................................................................................................................................................................AGGCGCTGGTGTTCCAT............................ 171.000.00-----------1.00----------------------------------------------------------------
..........................................TCAGCCAGGTCAGCCCAAGC.................................................................................................................................................................................................. 201.000.00---------------------------------------------------------------1.00------------
...............................................CAGGTCAGCCCGGGGGCA............................................................................................................................................................................................... 181.000.00-------------------1.00--------------------------------------------------------
...............................................................................................................................................................................................TGGTACCCCCCACAG.................................................. 1520.500.50-----------------------------------------------------------------------0.50----