ID: uc002ihn.2
GENE: EFTUD2(15)
chr17:42940225-42940474-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(6)
BRAIN 		(4)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(2)
LIVER 		(3)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGAGAATATTTTTGCTCTGCCATGTCTCCTATTCATCCTTCTCAGAGGGATGGGGTAGAACATGGTTTGGAGATGAGACTACCTCATCTTTCTCTAGCTCCTCATAGAGCTCATGTCCTTGCTGTCAAGGAAGATGGCGGGGAGTAGTACTTCCCCGGAGCATAGATGTGGTTGAAGCTGCACCCTGTCCCCTCTTCCAGGGCCCCCTGATGTGCCACACTACTAAGATGTACAGCACAGATGATGGAGT
................................................................................................................................((((((.(((((((.((((..((((.((...(((....)))))..)))))))).)))))))...))))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR189783SRR038852(GSM458535)
QF1160MB. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR189785SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR038861(GSM458544)
MM466. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189787SRR038863(GSM458546)
MM603. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925F181A(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)
...............................................................................................................................AGGAAGATGGCGGGGAGTAGT......................................................................................................21116.0016.00--2.00-----3.00--2.00--1.00-------1.001.00-------1.00----1.00------1.001.00-1.00------1.00--------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACT...................................................................................................24113.0013.00-6.00-5.00-------------1.00-------1.00------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAG.......................................................................................................2016.006.00------------2.00--1.00--------------1.00---------------------1.00--1.00------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACTT..................................................................................................2515.005.00-2.001.00-----------------------------------1.00------1.00----------------
.........................................................................................................................................CGGGGAGTAGTACTT..................................................................................................1524.004.004.00-------------------------------------------------------------
.................................................................................................................................................................................CTGCACCCTGTCCCCTCTTCCAGT.................................................2414.001.004.00-------------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACTATC................................................................................................2714.0013.00------4.00-------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTAA....................................................................................................2313.002.00---------------1.001.00------------------------------------------1.00--
................................................................................................................................GGAAGATGGCGGGGAGTAGTACTT..................................................................................................2413.003.00-1.00-2.00----------------------------------------------------------
.........................................................................................................................................CGGGGAGTAGTACT...................................................................................................1422.502.502.50-------------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACC...................................................................................................2412.001.00---1.00-------------------------------------------1.00--------------
......................................................................................................................................................................................................................................TACAGCACAGATGATGGA..1812.002.00---------2.00----------------------------------------------------
.....................................................................................................................................ATGGCGGGGAGTAGTACT...................................................................................................1812.002.002.00-------------------------------------------------------------
.....................................CTTCTCAGAGGGATGGGGTAGAACACTG.........................................................................................................................................................................................282.000.00-----2.00--------------------------------------------------------
..................................................................................................................................................................................TGCACCCTGTCCCCTCTTCCAG..................................................2212.002.001.00---------1.00---------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGA......................................................................................................2112.006.00----------------1.00------------------------1.00--------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTA.....................................................................................................2212.002.00----------------------------------1.00--------------1.00------------
....................................................................................................................................GATGGCGGGGAGTAGTAA....................................................................................................182.000.002.00-------------------------------------------------------------
......................................................................................................................................TGGCGGGGAGTAGTACT...................................................................................................1712.002.002.00-------------------------------------------------------------
................................................................................................................................................................................GCTGCACCCTGTCCCCTCTTCCAGT.................................................252.000.00----2.00---------------------------------------------------------
.............................................AGGGATGGGGTAGAACCA...........................................................................................................................................................................................182.000.00-------------------------------------1.00--1.00---------------------
..................................................................................................................................................................................TGCACCCTGTCCCCTCTTCCAGAT................................................2412.002.00-------------2.00------------------------------------------------
.........................................................................................................................................CGGGGAGTAGTAC....................................................................................................1361.331.331.33-------------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTAG....................................................................................................2311.002.00--1.00-----------------------------------------------------------
..............................................................................................................................AAGGAAGATGGCGGGGAGTAGTACT...................................................................................................2511.001.00----------------------1.00---------------------------------------
..........................................................................................................................................................................................................................................GCACAGATGATGGAGCTCA191.000.00-----1.00--------------------------------------------------------
.................................................................................................................................................................................CTGCACCCTGTCCCCTCTTCC....................................................2111.001.00----1.00---------------------------------------------------------
................................................................................................................................................................................GCTGCACCCTGTCCCCTCTTCCA...................................................2311.001.00----1.00---------------------------------------------------------
..................................................TGGGGTAGAACATGGTGTTG....................................................................................................................................................................................201.000.00--------------------------------1.00-----------------------------
..................................................................................................................................................................................TGCACCCTGTCCCCTCTTCAG...................................................211.000.00-------1.00------------------------------------------------------
.............................................AGGGATGGGGTAGAACACTG.........................................................................................................................................................................................201.000.00--------------------------------------------------------1.00-----
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACTTA.................................................................................................2611.005.00--1.00-----------------------------------------------------------
..........................................CAGAGGGATGGGGTAGAAC.............................................................................................................................................................................................1911.001.00---------------------------------------------------1.00----------
.................................................................................................................................................................................CTGCACCCTGTCCCCTCTTCCAG..................................................2311.001.00----1.00---------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGGAGT...................................................................................................2411.006.00--1.00-----------------------------------------------------------
.............................................AGGGATGGGGTAGAAACC...........................................................................................................................................................................................181.000.00--------------------1.00-----------------------------------------
.............................TATTCATCCTTCTCACTG...........................................................................................................................................................................................................181.000.00----------1.00---------------------------------------------------
..................................................................................................................................................................................................................................GATGTACAGCACAGATGATGG...2111.001.00----------------------------------------------------------1.00---
......................................................................................................................................................................................................................................TACAGCACAGATGATGCA..181.000.00--------------------------------------------------1.00-----------
........................................................................................................................................................................................................................ACACTACTAAGATGTACAGC..............2011.001.00---------------------------------1.00----------------------------
................................................................................................................................GGAAGATGGCGGGGAGTAGTAACT..................................................................................................241.000.00---1.00----------------------------------------------------------
....................................................................................................CTCATAGAGCTCATGTCCTTG.................................................................................................................................2111.001.00------------------1.00-------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTAGT...................................................................................................2411.002.00--1.00-----------------------------------------------------------
.............................................................................................................................................................................................................CCTGATGTGCCACACTA............................1711.001.00-----------------------------------1.00--------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGAAA....................................................................................................2311.006.00--1.00-----------------------------------------------------------
................................................................................................................................................................................................................................AAGATGTACAGCACAGATGATGGA..2411.001.00-------------------------------------------------------------1.00
...............................................................................................................................AGGAAGATGGCGGGGAGTAGGA.....................................................................................................2211.006.00-----------------------------1.00--------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACTA..................................................................................................2511.0013.00------------------------------------------------------1.00-------
........................................CTCAGAGGGATGGGGTAGAACATGGTTTGGAG..................................................................................................................................................................................3211.001.00------------------------------------------------1.00-------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGAA.....................................................................................................2211.006.00------------------------1.00-------------------------------------
............................................................................GACTACCTCATCTTTCTCTAGCTC......................................................................................................................................................2411.001.00------------------1.00-------------------------------------------
..................................................................................................................................................................................TGCACCCTGTCCCCTCTTCCAGT.................................................2311.002.00----1.00---------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGCAGT......................................................................................................211.000.00----------------------------1.00---------------------------------
................................................................................................................................................................................GCTGCACCCTGTCCCCTCTTCCAGAA................................................261.000.00---------------------------------------------------------1.00----
..................................................................................................................................................................................TGCACCCTGTCCCCTCTTCCCG..................................................221.000.00---------------------1.00----------------------------------------
.....................................................................................................................................ATGGCGGGGAGTAGTACTTCTG...............................................................................................221.000.00--------------------------1.00-----------------------------------
.........................................TCAGAGGGATGGGGTGCAT..............................................................................................................................................................................................191.000.00--------------------1.00-----------------------------------------
............................................GAGGGATGGGGTAGAACACTG.........................................................................................................................................................................................211.000.00--------------1.00-----------------------------------------------
..........................................CAGAGGGATGGGGTAGAACACTG.........................................................................................................................................................................................231.000.00-----1.00--------------------------------------------------------
..........................TCCTATTCATCCTTCCGC..............................................................................................................................................................................................................181.000.00---------------------------------------1.00----------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTACTAT.................................................................................................2611.0013.00--1.00-----------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTAC....................................................................................................2311.001.00------------------------------------------------------------1.00-
...............................................................................................................................AGGAAGATGGCGGGGAGTAGTAT....................................................................................................2311.002.00---------------------------1.00----------------------------------
......................................................................................................................................................................................................................................TACAGCACAGATGATGTA..181.000.00---------1.00----------------------------------------------------
..............................................GGGATGGGGTAGAACGCTG.........................................................................................................................................................................................191.000.00-----1.00--------------------------------------------------------
...............................................................................................................................AGGAAGATGGCGGGGAGT.........................................................................................................1820.500.50-----------------------0.50--------------------------------------
.....................................................................................................................................ATGGCGGGGAGTAG.......................................................................................................1450.200.200.20-------------------------------------------------------------

Antisense strand
GGAGAATATTTTTGCTCTGCCATGTCTCCTATTCATCCTTCTCAGAGGGATGGGGTAGAACATGGTTTGGAGATGAGACTACCTCATCTTTCTCTAGCTCCTCATAGAGCTCATGTCCTTGCTGTCAAGGAAGATGGCGGGGAGTAGTACTTCCCCGGAGCATAGATGTGGTTGAAGCTGCACCCTGTCCCCTCTTCCAGGGCCCCCTGATGTGCCACACTACTAAGATGTACAGCACAGATGATGGAGT
................................................................................................................................((((((.(((((((.((((..((((.((...(((....)))))..)))))))).)))))))...))))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR189783SRR038852(GSM458535)
QF1160MB. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR189785SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR038861(GSM458544)
MM466. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189787SRR038863(GSM458546)
MM603. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925F181A(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)
.............GCTCTGCCATGTCTCCGG........................................................................................................................................................................................................................... 183.000.00-------3.00------------------------------------------------------
..................................................................................................................................................................................................TTCCAGGGCCCCCTGTGGG..................................... 192.000.00-------------------2.00------------------------------------------
...........................................................................................................................................................................TTGAAGCTGCACCCTGATTT........................................................... 201.000.00-----------------1.00--------------------------------------------
.............................................................................ACTACCTCATCTTTCAGG........................................................................................................................................................... 181.000.00------------------------------------------1.00-------------------
....................................................................GGAGATGAGACTACCTG..................................................................................................................................................................... 171.000.00---------------------1.00----------------------------------------