ID: uc002hcs.4
GENE: TRAF4(4)
chr17:27075392-27075578+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(17)
BREAST 		(31)
CELL-LINE 		(1)
FIBROBLAST 		(7)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
OTHER.ip 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATG
...................................................................(((.((((..(((((((((.((((((.((((((....))))))))))..)))))))).)))..)))))))..................................................
.................................................................66.....................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029127(GSM416756)
A549. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038860(GSM458543)
MM426. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189785TAX577740(Rovira)
total RNA. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR343334SRR189786SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		TAX577742(Rovira)
total RNA. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189784SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................TGGGTTGCAGGGTAGGTGACA................................................................................................21125.0025.00----2.001.00--4.00-1.00--2.00-----1.00-1.00-----2.00---2.001.00------1.00-----------------1.001.00---1.00-1.001.00------1.00---------1.00--------------
..........................................................................TTGCAGGGTAGGTGACAGGTAG...........................................................................................22114.0014.0012.00---------------1.00-------1.00------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTG.........................................................80110.0010.00-6.00-4.00---------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGA..................................................................................................1918.008.00----1.00----1.00---1.00-------1.00------1.00---1.00--------------------1.00----------------1.00--------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAG...........................................................................................2118.008.002.00----1.001.00--------------------------2.00----------------------1.00-----------1.00----------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAT..................................................2316.003.00--4.00----------------------------------1.00----------1.00------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCC......................................................1915.005.00------1.00-------1.00-------------------------1.00-------------------------1.00------1.00-----------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGG........................................................2315.005.00-----------------3.00------------------------------------1.00---------------------------------1.00--------
..........................................................................TTGCAGGGTAGGTGACAGGTAGA..........................................................................................2315.0014.004.00--------1.00---------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAA..................................................2314.003.00------------4.00------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCATT.................................................2413.003.00--1.00--------------------------------------------------------1.00---------------1.00---------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCC.....................................................8413.003.00-3.00-----------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGAC.................................................................................................2013.003.00----------------2.00-------------------1.00------------------------------------------------------------
.......................AAGGAGTTCGTCTTTGACAC................................................................................................................................................2013.003.00-------3.00-----------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTG...................................................................................................2013.003.00---------1.00--------------------2.00------------------------------------------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGT..........................................................................................2313.003.002.00---------------------------1.00--------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTA............................................................................................2013.003.001.00--------------1.00---------1.00-----------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGT.................................................2413.001.00------1.00-------1.00-----------------------------------------------------------1.00----------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCA...................................................2213.003.00--------------1.00-------------------2.00--------------------------------------------------------------
...............................................................................................................CTGCCTCTCTACTTCTGTGGC.......................................................2112.002.002.00------------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGAAA................................................................................................2112.008.00-----2.00-------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAA...............................................................................................2212.0025.00-----1.00-----1.00-------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGAC.................................................................................................2212.002.00--2.00----------------------------------------------------------------------------------------------
...............................................................TGAACTGTGGGTTGCAGGGTAGG.....................................................................................................2312.002.00----------------------1.00---------------1.00----------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGA..................................................................................................2112.002.00----1.00----------------------------------------------------------------1.00---------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCC......................................................8312.002.00---2.00---------------------------------------------------------------------------------------------
........................AGGAGTTCGTCTTTGACACCA..............................................................................................................................................2112.002.00-------1.00-------1.00---------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTAG...........................................................................................2612.002.001.00------------------------------------------1.00-----------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGACA................................................................................................2312.002.00----------1.001.00-------------------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTT...............................................................................................................2612.002.001.00---------------------------------------------1.00--------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGC.................................................2411.001.00---------------------------------------------------1.00---------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGA..........................................................................................2211.008.001.00------------------------------------------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTTT........................................................231.000.00-----------1.00-------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTAGTC.........................................................................................2811.001.00-----------------------------------------------------------------------------------------1.00-------
........................AGGAGTTCGTCTTTGACACCAT.............................................................................................................................................2211.001.00-----------------------------------------------------------------------1.00-------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGAAT................................................................................................2311.002.00------------------------------------------------------------------------------1.00------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCCA..................................................2311.001.00-----------1.00-------------------------------------------------------------------------------------
................................................................................................................................................AGTACCAGTGCCCAAGG..........................1711.001.00------------------------------------------------------------------------------------------1.00------
.....................................................................................................ATATTGACTCCTGCCTCTCTACTTCT............................................................2611.001.00------------------1.00------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGG.....................................................................................................1811.001.00--------------------------------------------------------------------------------1.00----------------
.......................AAGGAGTTCGTCTTTGACACCAT.............................................................................................................................................2311.001.00-------------------------------------------------------------1.00-----------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGG.................................................................................................................2411.001.00----------------------1.00--------------------------------------------------------------------------
.............................................................................................................TCCTGCCTCTCTACTTCTGTGGC.......................................................2311.001.00----------------------------------------------------1.00--------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGGA.......................................................2411.005.00-------------------------------------------------1.00-----------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGATA............................................................................................201.000.00---------------1.00---------------------------------------------------------------------------------
................................................................................................................................................AGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCC..........3311.001.00-----------------------------------------------------------------------------------1.00-------------
...........................................................................TGCAGGGTAGGTGACAGGCAGT..........................................................................................221.000.001.00------------------------------------------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTG.........................................................2211.001.00-------------------------------------------------------------------------------1.00-----------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCC....................................................2111.001.00-------------------------1.00-----------------------------------------------------------------------
..............................................................................................................CCTGCCTCTCTACTTCTGTGG........................................................2111.001.00--------------------1.00----------------------------------------------------------------------------
............................................................................GCAGGGTAGGTGACAGGTAGT..........................................................................................2111.001.00-------------------1.00-----------------------------------------------------------------------------
...................................................................................AGGTGACAGGTAGTCAGGATAT..................................................................................2211.001.00--------------------------------------------------1.00----------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCC.....................................................2011.001.00--------------------1.00----------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGT..........................................................................................2211.001.00------------------------1.00------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTG...................................................................................................1811.001.00-----------------------------1.00-------------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGGC.......................................................2411.001.00----------------------------------------------------------------------------1.00--------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAAA.................................................2411.003.00-----------------------------------------1.00-------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAAT.................................................2411.003.00---------------------------------------------------------------------------------------1.00---------
.....................................................................GTGGGTTGCAGGGTAGGTGACAG...............................................................................................2311.001.00-----------------------------1.00-------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTA............................................................................................2511.001.00---------1.00---------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAG..................................................2311.001.00------------------------------------------1.00------------------------------------------------------
...................................................................CTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAG.......................................................................................3311.001.00-----------------------------------------------------------------------------1.00-------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCTTT...................................................2211.005.00------1.00------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGT..............................................................................................231.000.00--------------------------------------------------------------------------------------1.00----------
....................................................................TGTGGGTTGCAGGGTAGGTGACAGG..............................................................................................2511.001.00---------------------------------------------------------------1.00---------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGA.................................................2411.001.00-----------------------------------------------1.00-------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAAA.....................................................................................................181.000.00----------1.00--------------------------------------------------------------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGTA.........................................................................................2411.003.00----------1.00--------------------------------------------------------------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGTCA........................................................................................2511.001.00-------------------------------------------------------------------------------------1.00-----------
................................GTCTTTGACACCATCCAG.........................................................................................................................................1821.001.00--------------------------------------------------------------------------------------------0.500.50---
.....................CTAAGGAGTTCGTCTTTGACACCATCC...........................................................................................................................................2711.001.00-----------------------1.00-------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGATT................................................................................................2111.008.00----1.00--------------------------------------------------------------------------------------------
....................................................................................................................TCTCTACTTCTGTGGCCCCAG..................................................2111.001.001.00------------------------------------------------------------------------------------------------
.....................................................................................................ATATTGACTCCTGCCTCTCTACTTCTG...........................................................2711.001.00------------------1.00------------------------------------------------------------------------------
.................................................................................GTAGGTGACAGGTAGTC.........................................................................................1711.001.00------------------------------------------------------------1.00------------------------------------
................................................................................................................................................AGTACCAGTGCCCAAGGCTGCCTG...................2411.001.00--------------------------1.00----------------------------------------------------------------------
......................TAAGGAGTTCGTCTTTGACACC...............................................................................................................................................2211.001.00---------------------------------------------1.00---------------------------------------------------
...............ACTGCACTAAGGAGTTCGTCTTTGACACC...............................................................................................................................................2911.001.00-----------------------1.00-------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGTC.........................................................................................2311.001.00--1.00----------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAT...............................................................................................2211.0025.00------------------------------------------------------------------------------------1.00------------
.......................AAGGAGTTCGTCTTTGACACCATCCA..........................................................................................................................................2611.001.00-------------------------------------------------------1.00-----------------------------------------
.....................................................................................................................................................................CTGTTGCCTGCCCCAACC....1820.500.50-------------------------------------------------------------------------------------------0.50-----
....................................................................................................GATATTGACTCCTGCC.......................................................................1630.330.33-----------------------------------------------------------------------------------------------0.33-
..................................................................................................................CCTCTCTACTTCTGTGG........................................................1730.330.33------0.33------------------------------------------------------------------------------------------

Antisense strand
CTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATG
...................................................................(((.((((..(((((((((.((((((.((((((....))))))))))..)))))))).)))..)))))))..................................................
.................................................................66.....................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029127(GSM416756)
A549. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038860(GSM458543)
MM426. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189785TAX577740(Rovira)
total RNA. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR343334SRR189786SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		TAX577742(Rovira)
total RNA. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189784SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
................CTGCACTAAGGAGTTCGGA........................................................................................................................................................ 191.000.00------------------1.00------------------------------------------------------------------------------
...................................................................................................................................CCCCAGAGCCACCAGTACCAG................................... 2111.001.00-----------------------------------1.00-------------------------------------------------------------
..........................................................................................AGGTAGTCAGGATATCTG............................................................................... 181.000.00--------------------------------------------1.00----------------------------------------------------
.......................................................................................................................................................GTGCCCAAGGCTGCCTGTTGCCTGCCCCAACGG... 331.000.00--------------------------1.00----------------------------------------------------------------------
................................................................................................................................................AGTACCAGTGCCCAATGGG........................ 191.000.00---------------------------------------------------------------------------------1.00---------------
...............................................................................................................................................................GGCTGCCTGTTGCCTG............ 161.000.00-------------------------------------------------------------------1.00-----------------------------
.....................................................................................................................................CCAGAGCCACCAGTACCAG................................... 1920.500.50-----------------------------------0.50-------------------------------------------------------------
......................................................................................................................TCTACTTCTGTGGCCCC.................................................... 1730.330.33----------------------------------------------------------------------------------------------0.33--
.............CTACTGCACTAAGGA............................................................................................................................................................... 1570.140.14------------------------------------------------------------------------------------------------0.14