ID: uc002hbu.2
GENE: KIAA0100(34)
chr17:26969956-26970231-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(4)
HELA 		(5)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
ATCAAAAGGAACTGTCCTTCAGCCCATCCTTATTGAAGATCTTCTGCCAAGTGAGACAACTTCTCCTGCTATCCTGGACTGTACTTTGGCATGGTTGGCTTTGGAGTTATGGGTAGATTTTTCTGTTTTTAGGGCATAATGCTAAGAGCTGCCCCTCTTTCTCATCTGGAAAGGAAGGGCAGTTCCTTAACATTAATTATTGTTCATCCTTGCTTCTTCCTTCCAGCTATTCTCCATTCATGTAGATGCTATAAACATCATGGTTCTCAAGGTGGA
.....................................................................................................................................................................((((.((((((((((((......((((........)))).....))))).)))))))))))..................................................
...............................................................................................................................................................160...............................................................226................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189786SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785TAX577740(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................................................................................TCATCCTTGCTTCTTCCTTCCAG..................................................23113.0013.003.008.00-----1.00------1.00-----------------------------------------
...........................................................................................................................................................................................................TCATCCTTGCTTCTTCCTTCCAGT.................................................2418.0013.001.00--1.003.00----1.00------1.00----1.00----------------------------------
....................................................................................................................................................................TCTGGAAAGGAAGGGCAGTTCC..........................................................................................2216.006.00---5.00----------------------------------------1.00-----------
..........................................................................................................................................................................................................TTCATCCTTGCTTCTTCCTTCCAGT.................................................2515.001.001.00-------3.00------------------------1.00----------------------
............................................................................................................................................................................................................CATCCTTGCTTCTTCCTTCCAGT.................................................2325.005.002.00-------------0.500.50-------------------------------0.500.500.50-0.50----
............................................................................................................................................................................................................CATCCTTGCTTCTTCCTTCCAG..................................................2225.005.005.00-------------------------------------------------------
...............................................................................................................................................................................................................................................ATGTAGATGCTATAAACATC.................2013.003.00-----3.00--------------------------------------------------
....................................................................................................................................................................TCTGGAAAGGAAGGGCAGTTA...........................................................................................212.000.00---1.00--1.00-------------------------------------------------
..........................................................................................................................................................................................................................................................ATAAACATCATGGTTCTCAAG.....2112.002.00---------2.00----------------------------------------------
...AAAAGGAACTGTCCTTCAG..............................................................................................................................................................................................................................................................1911.001.001.00-------------------------------------------------------
...............................ATTGAAGATCTTCTGCCAA..................................................................................................................................................................................................................................1911.001.00----------------------------1.00---------------------------
..................................................................................................................................................................................................................................CTATTCTCCATTCATGTAGAT.............................2111.001.00--------------------------1.00-----------------------------
....AAAGGAACTGTCCTTCAGCCCATCCT......................................................................................................................................................................................................................................................2611.001.00------------1.00-------------------------------------------
.............................................................................................................................................................................................................ATCCTTGCTTCTTCCTTCCAG..................................................2121.001.001.00-------------------------------------------------------
..............................................................................................................................................................................................................................................CATGTAGATGCTATAGAGA...................191.000.00-----------------------------------1.00--------------------
......................................................................................TGGCATGGTTGGCTTTGGAGTTATGG....................................................................................................................................................................2611.001.00---------------------------------------------1.00----------
.................................TGAAGATCTTCTGCCAAC.................................................................................................................................................................................................................................181.000.00-----------1.00--------------------------------------------
.................................TGAAGATCTTCTGCCAAGTGAGACAAC........................................................................................................................................................................................................................2711.001.00-----1.00--------------------------------------------------
.................................................................................................................................................................TCATCTGGAAAGGAAGGGCA...............................................................................................2011.001.00---------------------------------------1.00----------------
................................................................................................................................................................................................................................................TGTAGATGCTATAAACATCATGGTTCTCAAGG....3211.001.00-----------1.00--------------------------------------------
..........................................................................................................................................................................................................TTCATCCTTGCTTCTTCCTTCCAG..................................................2411.001.001.00-------------------------------------------------------
........................................................................CCTGGACTGTACTTTGGCATGGTT....................................................................................................................................................................................2411.001.00------------------------------1.00-------------------------
...........................................................................................................................................................................................................TCATCCTTGCTTCTTCCTTCC....................................................2111.001.00-------------------------------------1.00------------------
............................................................................................................................................................................................................CATCCTTGCTTCTTCCTTCCAGA.................................................2321.005.000.50---------------0.50---------------------------------------
..........................................................................................................................................................................................................TTCATCCTTGCTTCTTCCTTCCA...................................................2311.001.00-------1.00------------------------------------------------
............................................................................................................................................................................................................CATCCTTGCTTCTTCCTTCCGG..................................................221.000.00----------1.00---------------------------------------------
...........................................................................................................................................................................................................TCATCCTTGCTTCTTCCTTCCA...................................................2211.001.00------------------------------------------1.00-------------
.............................................................................................................................................................................................................................................TCATGTAGATGCTATAAACATCATGG.............2611.001.00--------------------1.00-----------------------------------
...................................................................GCTATCCTGGACTGTACTTTGGCATGGTT....................................................................................................................................................................................2911.001.00-------------------------------------------1.00------------
.........................................................................................................................................................................................................................................CCATTCATGTAGATGCTATAAACAT..................2511.001.00--------------------------------1.00-----------------------
..........................................................................................ATGGTTGGCTTTGGACAC........................................................................................................................................................................181.000.00------------------------------------1.00-------------------
.............................................................................................GTTGGCTTTGGAGTTGCAG....................................................................................................................................................................191.000.00-------------------------------1.00------------------------
...........................................................................................................................................................................................................TCATCCTTGCTTCTTCCTTCCAGTAG...............................................2611.0013.001.00-------------------------------------------------------
..........................................................................................................................................................................................................TTCATCCTTGCTTCTTCCTTCCAGA.................................................2511.001.001.00-------------------------------------------------------
....................................................................................................................................................................TCTGGAAAGGAAGGGCAGTTC...........................................................................................2111.001.00-----------------------------1.00--------------------------
..............................................................................................................................................................................................................................................CATGTAGATGCTATAAACATCATGGT............2611.001.00----------------------------------1.00---------------------
.......................................................................................................................................................................................................................................CTCCATTCATGTAGATGCTATA.......................2211.001.00-----------------------------------------1.00--------------
..............................................................................................TTGGCTTTGGAGTTATGGG...................................................................................................................................................................1911.001.00-----1.00--------------------------------------------------
.............................TTATTGAAGATCTTCTGCCAACT................................................................................................................................................................................................................................231.000.00----1.00---------------------------------------------------
....................................................................................................................................................................................................................................ATTCTCCATTCATGTAGAT.............................1911.001.00------------1.00-------------------------------------------
.......................................................................................................................TTTCTGTTTTTAGGGCATAATGCTAAGAGCTGCCCCTCTTTCTCATCTGGAAAGGAAGGGCAGTTCCTTAACATT..................................................................................7511.001.00---------------------------1.00----------------------------
...........................................................................................................................................................................................................TCATCCTTGCTTCTTCCTTCCAGA.................................................2411.0013.00------1.00-------------------------------------------------
............................................................................................................................................................................................................CATCCTTGCTTCTTCCTTCTAG..................................................221.000.00-----------------1.00--------------------------------------
...................................................................................................................................................................................................................................TATTCTCCATTCATGTAG...............................1811.001.00------1.00-------------------------------------------------
.....................................................................TATCCTGGACTGTACTTTGG...........................................................................................................................................................................................2011.001.00----------1.00---------------------------------------------
......................................................................................................................................................................TGGAAAGGAAGGGCAGTTCCTTAA......................................................................................2411.001.00-------1.00------------------------------------------------
....................................................................................................................................................................................................................................ATTCTCCATTCATGTAG...............................1711.001.00-------------------1.00------------------------------------
...........................................................................................................TATGGGTAGATTTTTCTGT......................................................................................................................................................1911.001.00----1.00---------------------------------------------------
.................................................................................................GCTTTGGAGTTATGGGGTT................................................................................................................................................................191.000.00-------------------------1.00------------------------------
................................................................................GTACTTTGGCATGGTTGG..................................................................................................................................................................................1811.001.00----------------------------------------1.00---------------
.........................................................................CTGGACTGTACTTTGGCATG.......................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------
........................................................................................................................................................................................................................................TCCATTCATGTAGATGCTAT........................2011.001.00--------------------------------------1.00-----------------
..........................................................................TGGACTGTACTTTGGCATGGTTG...................................................................................................................................................................................2311.001.00------------------------1.00-------------------------------
........................................................................................................................TTCTGTTTTTAGGGCAT...........................................................................................................................................1720.500.50--------------------------------------------------0.50-----
.............................................................................................................................................................................................................ATCCTTGCTTCTTCCTTCCAT..................................................2120.500.500.50-------------------------------------------------------
............................................................................................................................................................................................................CATCCTTGCTTCTTCCTTCCA...................................................2120.500.500.50-------------------------------------------------------
.............................................................................................................................................................................................................ATCCTTGCTTCTTCCTTCCA...................................................2020.500.50----------------------------------------------0.50---------
..........................................................................TGGACTGTACTTTGGC..........................................................................................................................................................................................1630.330.33----------------------------------------------0.33---------
............................................................................GACTGTACTTTGGCA.........................................................................................................................................................................................1540.250.25----------------------------------------------------0.25---
....................................................................................................................................................................TCTGGAAAGGAAGGGCA...............................................................................................1750.200.20-----------------------------------------------------0.20--
....................................................................................................................................................................TCTGGAAAGGAAGGGC................................................................................................1680.120.12------------------------------------------------------0.12-

Antisense strand
ATCAAAAGGAACTGTCCTTCAGCCCATCCTTATTGAAGATCTTCTGCCAAGTGAGACAACTTCTCCTGCTATCCTGGACTGTACTTTGGCATGGTTGGCTTTGGAGTTATGGGTAGATTTTTCTGTTTTTAGGGCATAATGCTAAGAGCTGCCCCTCTTTCTCATCTGGAAAGGAAGGGCAGTTCCTTAACATTAATTATTGTTCATCCTTGCTTCTTCCTTCCAGCTATTCTCCATTCATGTAGATGCTATAAACATCATGGTTCTCAAGGTGGA
.....................................................................................................................................................................((((.((((((((((((......((((........)))).....))))).)))))))))))..................................................
...............................................................................................................................................................160...............................................................226................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189786SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785TAX577740(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................................................................................................................TCTTCCTTCCAGCTATC............................................. 177.000.00--7.00-----------------------------------------------------
........................................................................CCTGGACTGTACTTTGTAG......................................................................................................................................................................................... 191.000.00----------------------1.00---------------------------------
........................................................................CCTGGACTGTACTTTGCAG......................................................................................................................................................................................... 191.000.00-------------1.00------------------------------------------
....................................................................................................................................................................................................................CTTCTTCCTTCCAGCTATAGA........................................... 211.000.00---------------1.00----------------------------------------
...................................................................................................................................................................................................................................................AGATGCTATAAACATGTC............... 181.000.00------------------1.00-------------------------------------
...............................................................................................................................................AAGAGCTGCCCCTCTTG.................................................................................................................... 171.000.00-----------------------1.00--------------------------------
....................................................................CTATCCTGGACTGTAGTT.............................................................................................................................................................................................. 180.800.00-------------0.80------------------------------------------
....................................................................CTATCCTGGACTGTA................................................................................................................................................................................................. 1550.400.40-------0.20---------0.20--------------------------------------
......................................................................................................................................................................................................................TCTTCCTTCCAGCTAT.............................................. 1690.110.11-------------------------------------------------------0.11