ID: uc002ewx.1
GENE: PDF(1)
chr16:69363033-69363282-


(1)
AGO2.ip
(1)
AGO3.ip
(3)
B-CELL
(4)
BRAIN
(1)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(2)
HEART
(4)
HELA
(5)
LIVER
(4)
OTHER
(12)
SKIN
(1)
TESTES

Sense strand
GTTGGGAACCAGGTTGAACGCTTGGTAATGGACCGAGATGAGGGACGTTTTCCAGTTAGAAGAGGAGCTGCTGTCTACATTTGCCATCTGCTGTTGCCTCTTGTCAATGGGAACAGCCAGGACCGGGGGCAGGGGTAGGGAGGTTGAGGATGATGCAGTTCAGCTGTTCCCACTCACCAGGGCTGTAACTTCCTTTGCAGGGCTGGACCCCAATGGAGAACAGGTGGTGTGGCAGGCGAGCGGGTGGGCA
..............................................................................................................................................((.(((((...((((((((...((........))...))))))))...))))).))....................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM532874(GSM532874)
G699T. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189785SRR189787GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM339994(GSM339994)
hues6. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................................................TTGAGGATGATGCAGTTCAGCT.....................................................................................22123.0023.0016.00---------2.00--2.00--------1.00--------------1.00-1.00--------
..................................................................................................................................................................................AGGGCTGTAACTTCCTTTGCAG..................................................2217.007.006.00--1.00--------------------------------------------
............................................................................................................................................AGGTTGAGGATGATGCAGT...........................................................................................1914.004.00--4.00---------------------------------------------
...............................................................................................................................................TTGAGGATGATGCAGTTCAG.......................................................................................2014.004.00-4.00----------------------------------------------
..................................................................................................................................AGGGGTAGGGAGGTTGAGGATGATGCAGTTCAGCTGTTCCCACTCACCAGGGCTGTAACTTCCTTTG.....................................................6713.003.00-----3.00------------------------------------------
................................................................................................................................................................................CCAGGGCTGTAACTTCCTTTGCAGT.................................................252.000.002.00-----------------------------------------------
..........AGGTTGAACGCTTGGTAATGG...........................................................................................................................................................................................................................2111.001.00---------------1.00--------------------------------
................................................................................................................................................................................CCAGGGCTGTAACTTCCTTTGCA...................................................2311.001.00---1.00--------------------------------------------
................................................................................................................................................................................CCAGGGCTGTAACTTCCTTTGCAGGGC...............................................2711.001.00--------1.00---------------------------------------
.................................................................................................................................................................................CAGGGCTGTAACTTCCTTTGCAG..................................................2311.001.00----1.00-------------------------------------------
...............................................................................................................................................TTGAGGATGATGCAGTTCAGC......................................................................................2111.001.00------------1.00-----------------------------------
...............................................................................................................................................TTGAGGATGATGCAGTTCAGCTACC..................................................................................2511.0023.00------------------------------1.00-----------------
.......................................................................................................................................................................................................GGGCTGGACCCCAATGGAGAACAGG..........................2511.001.00--------------------------------------1.00---------
.................................................................................................................................................GAGGATGATGCAGTTCAGCTG....................................................................................2111.001.00---1.00--------------------------------------------
...................................................................................................................................GGGGTAGGGAGGTTGTAT.....................................................................................................181.000.00------------1.00-----------------------------------
..................................................................................................................................................................................................................CAATGGAGAACAGGTGGTGTGG..................2211.001.00------1.00-----------------------------------------
.................................CGAGATGAGGGACGTTT........................................................................................................................................................................................................1711.001.00----1.00-------------------------------------------
...............................................................................................................................................................................................................CCCCAATGGAGAACAGGTG........................1911.001.00-------------------1.00----------------------------
..................................................................................................................................................................................AGGGCTGTAACTTCCTTTGCAGA.................................................2311.007.00----------------1.00-------------------------------
....................................................................................................................................................................................................................ATGGAGAACAGGTGGTGTGG..................2011.001.00---------------------1.00--------------------------
.........................................................................................................AATGGGAACAGCCAGGACCGGGGG.........................................................................................................................2411.001.00------------------1.00-----------------------------
................................................................................................................................................................................CCAGGGCTGTAACTTCCTTTGC....................................................2211.001.00---------------------------1.00--------------------
............................................................................ACATTTGCCATCTGCACCT...........................................................................................................................................................191.000.00-1.00----------------------------------------------
.................................................................................................................................................................................................................CCAATGGAGAACAGGTGGTGTGGCA................2511.001.00--------1.00---------------------------------------
..................................................................................................................................................................................AGGGCTGTAACTTCCTTTG.....................................................1911.001.00-1.00----------------------------------------------
..........................AATGGACCGAGATGAGGGACGTTTTCCAGT..................................................................................................................................................................................................3011.001.00--------------------1.00---------------------------
......................TGGTAATGGACCGAGATGAGGGACG...........................................................................................................................................................................................................2511.001.00--------------------------------1.00---------------
................................................................................................................................................TGAGGATGATGCAGTTCA........................................................................................1811.001.00-----------------------1.00------------------------
...............................................................................................................................................TTGAGGATGATGCAGTTCAA.......................................................................................201.000.00-1.00----------------------------------------------
.........................................................................................................................................................................................................GCTGGACCCCAATGGAGAACAGGTGG.......................2611.001.00------------------------1.00-----------------------
................................................................................................................................................TGAGGATGATGCAGTTCAGCT.....................................................................................2111.001.00--------------------------1.00---------------------
................................................................................................................................................TGAGGATGATGCAGTTCAGCTGTTCC................................................................................2611.001.00---------------------------------1.00--------------
..................................GAGATGAGGGACGTTTCGGG....................................................................................................................................................................................................201.000.00--------------1.00---------------------------------
.................................................TTCCAGTTAGAAGAGGAGCTGC...................................................................................................................................................................................2211.001.00------------------------------------1.00-----------
................................................................................................................................................TGAGGATGATGCAGTTCAGCTGT...................................................................................2311.001.00----1.00-------------------------------------------
..................................................................................................................................................................................................................CAATGGAGAACAGGTGGTGTGGCA................2411.001.00-------------------------1.00----------------------
.........................................................................................................................................................................................................GCTGGACCCCAATGGAGAACAGGTG........................2511.001.00-------------------------------1.00----------------
........................................................................................................................................AGGGAGGTTGAGGATTCA................................................................................................181.000.00----------------------------------1.00-------------
....................................................CAGTTAGAAGAGGAGCTG....................................................................................................................................................................................1820.500.50-----------------------------------------0.50------
.............................................................................................................GGAACAGCCAGGACCG.............................................................................................................................1660.170.17---------------------------------------------0.17--

Antisense strand
GTTGGGAACCAGGTTGAACGCTTGGTAATGGACCGAGATGAGGGACGTTTTCCAGTTAGAAGAGGAGCTGCTGTCTACATTTGCCATCTGCTGTTGCCTCTTGTCAATGGGAACAGCCAGGACCGGGGGCAGGGGTAGGGAGGTTGAGGATGATGCAGTTCAGCTGTTCCCACTCACCAGGGCTGTAACTTCCTTTGCAGGGCTGGACCCCAATGGAGAACAGGTGGTGTGGCAGGCGAGCGGGTGGGCA
..............................................................................................................................................((.(((((...((((((((...((........))...))))))))...))))).))....................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM532874(GSM532874)
G699T. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189785SRR189787GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM339994(GSM339994)
hues6. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.................................................................AGCTGCTGTCTACATTTGCCAT................................................................................................................................................................... 2212.002.00-------2.00----------------------------------------
............................................................................................................................................................AGTTCAGCTGTTCCCCTG............................................................................ 182.000.00-----------------1.00----------1.00-------------------
..................................................................GCTGCTGTCTACATTTGCCATCTG................................................................................................................................................................ 2412.002.00---------2.00--------------------------------------
............................................................................................................................................................AGTTCAGCTGTTCCCACTG........................................................................... 191.000.00-----------------------------------1.00------------
.................................................................................................................................................................................................................CCAATGGAGAACAGGTGGTGTGGCAG............... 2611.001.00-----------1.00------------------------------------
.................................................................AGCTGCTGTCTACATTTGCCA.................................................................................................................................................................... 2111.001.00----------------------------------------1.00-------
...........................................................................................................................................GAGGTTGAGGATGATG............................................................................................... 161.000.00-----------------------------1.00------------------
......................................................................CTGTCTACATTTGCCATCTGCT.............................................................................................................................................................. 2211.001.00------1.00-----------------------------------------
...........................................GACGTTTTCCAGTTAG............................................................................................................................................................................................... 1611.001.00-----------1.00------------------------------------
...........................................................................................................................................................CAGTTCAGCTGTTCCCA.............................................................................. 1720.500.50------------------------------------------0.50-----
................................................................................................................................................................................................................................TGGTGTGGCAGGCGA........... 1530.330.33-------------------------------------------0.33----
......................................................................................................................AGGACCGGGGGCAGG..................................................................................................................... 1550.200.20--------------------------------------------0.20---
..................................................................................................................................................................................................................................GTGTGGCAGGCGAG.......... 1460.170.17----------------------------------------------0.17-
.........................................................................TCTACATTTGCCATC.................................................................................................................................................................. 1590.110.11-----------------------------------------------0.11