ID: uc002dzz.8
GENE: FBXL19(8)
chr16:30957851-30958100+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(5)
BRAIN 		(13)
BREAST 		(41)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(4)
HELA 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATCATGGAAGGCCTCCGAGGAGGTGATGTGAGGAGTGGACAGATGAGGTCAGGCCATGAGGGTGTTTTTGAGAAGAGCAAGCCACAGAGTGCACCAGGTCACTCACTTATGTGGGAAGCAGGTGGAGGGCAGATGGTCTGGATACCTGGGCGCAGGGATGGGAGTGGCCAGGAGTGCTGACCTCTCATCTGGCTGCCCAGGGCAAACAGAGAGCCGTGGTCGGCTGCAGGGGGTGGCAGAACTGCGTCTG
................................................................................................................................................(((((((((..((((((((..((.(((.....))).)))))))))).)).))))))).................................................
.........................................................................................................................................138.................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189786SRR038861(GSM458544)
MM466. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		TAX577580(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR189784SRR037938(GSM510476)
293Red. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR343334GSM416733(GSM416733)
HEK293. (cell line)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR343335TAX577740(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		TAX577589(Rovira)
total RNA. (breast)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR038860(GSM458543)
MM426. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCATTT................................................2214.000.0012.00--1.00-------------------------------------------------1.00-----------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAG......................................................................................22110.0010.005.00-----1.00--1.00------------------------1.00-----------------------------------------1.00-------1.00----------------------
...................................................................................................................................................................................ACCTCTCATCTGGCTGCCCAGT.................................................229.000.00---1.00-------1.00-------1.00-1.00------1.00--1.00------------------------------------------1.00------------1.00-------1.00-----------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAG......................................................................................2118.008.00-3.00-1.00---------------------1.00---------------------------------1.00---------1.00----------------------1.00--------------
...................................................................................................................................................................................ACCTCTCATCTGGCTGCCCAGA.................................................228.000.00------------------1.00--------------2.00-2.00-------------------------------------------1.00----------1.00---1.00------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAGA.....................................................................................2317.0010.002.00-----1.00-1.00-----2.00------------1.00-------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGG........................................................................................2017.007.00--6.00--------------------------------------------------------------------1.00-----------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGT.....................................................................................2216.006.002.00----1.00--1.00-2.00------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGACT...............................................236.000.002.00-------------------------------------1.001.00----------------------1.00---1.00----------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCATT.................................................215.000.001.00--1.00--------------1.00-----------------2.00----------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGCC.................................................................................2514.004.00-2.00------------------1.00-1.00------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGT.....................................................................................2113.003.00----1.00-------------------------------------------------------------------------1.00-1.00--------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGG...................................................................................2313.003.00-----2.00------------------------------------------------1.00----------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGA.......................................................................................2013.003.00-----------1.00--------------1.00--------------------------------------------------1.00-----------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTA....................................................................................2313.006.00---------------2.00--------------------------------------------------------1.00----------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGA.................................................213.000.001.00--------------------------------------------------------------------------1.00----------1.00--------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGC..................................................................................2413.003.00------1.00----1.00----------------------------------------------------------------------------------------1.00------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGGCC.................................................................................2613.003.00----------------------------------------------1.00------------------1.00---------------------------1.00-------------
..................................................................................................................................................TGGGCGCAGGGATGGGAGTGG...................................................................................2113.003.00----1.00------------1.00------------1.00----------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGT........................................................................................1912.002.00--2.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTAT...................................................................................2412.006.00----1.00-----------------------------------------------------------------------------1.00------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGGCCT................................................................................2512.002.00------1.00------------------------------------------------------------------------------------------1.00---------
...............................................................................................................................................ACCTGGGCGCAGGGATGG.........................................................................................1812.002.00-----------------------2.00-----------------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGG...................................................................................2412.002.00------------------1.00---1.00------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGGCTAT...............................................................................2612.001.00-------------2.00---------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGG.........................................................................................1712.002.00--------------------------------------------------1.00--------------------------------1.00-----------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGAAA...............................................232.000.00------1.00-1.00--------------------------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAGT.....................................................................................2312.002.001.00--------------------------1.00-------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGA...................................................................................2212.001.00----1.00--------------------------------1.00---------------------------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGTTT...............................................232.000.00------------------------1.00------1.00---------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGA.......................................................................................2112.002.00------------------------------------------------1.00---------------1.00------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGTAA.................................................................................252.000.00-2.00---------------------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGA..................................................................................2412.003.00-----------------------------2.00-----------------------------------------------------------------------------
.............................................................................................................TGTGGGAAGCAGGTGGAGGGCAGACGG..................................................................................................................272.000.00-------2.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAAA.....................................................................................202.000.00-----------------2.00-----------------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAA......................................................................................2212.002.00----------------------------------------1.00---------------------------1.00--------------------------------------
..................................................................................................................................................TGGGCGCAGGGATGGGAGTGGC..................................................................................2212.002.00---------2.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGGCC.................................................................................2412.002.00------1.00------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGCAA................................................................................2611.003.00-------------------------------------1.00---------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGA.......................................................................................1911.001.00-----1.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CCAGGGCAAACAGAGAGCCG..................................2011.001.00------------------------------------------1.00----------------------------------------------------------------
..................................................................................................................................................TGGGCGCAGGGATGGGAGTGGCC.................................................................................2311.001.00------------------------------1.00----------------------------------------------------------------------------
.......................................................................................................................................GTCTGGATACCTGGGCG..................................................................................................1711.001.00----------1.00------------------------------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGGT..................................................................................2511.002.00--------------------1.00--------------------------------------------------------------------------------------
................GAGGAGGTGATGTGAGTGG.......................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------------1.00-----
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGT.................................................211.000.00-------------------------------------------------------------------------------------1.00---------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAAA.....................................................................................2311.002.00------------------------------------------------------------------------------------------------------1.00----
......................................................................................................................................................................................TCTCATCTGGCTGCCCAGAAGA..............................................221.000.00-----------------------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................TACCTGGGCGCAGGGATGG.........................................................................................1911.001.00------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGAA................................................221.000.00---------------------------------------------------------------------------------------------------1.00-------
..................................................................................................................................................TGGGCGCAGGGATGGGAGTGGCCT................................................................................2411.001.00----------------------------------------------------------------------1.00------------------------------------
........................................AGATGAGGTCAGGCCATGAGGGCGT.........................................................................................................................................................................................251.000.00-------1.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGGCCCTTC.............................................................................2811.002.00------------1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCGTGGTCGGCTGCAGGGGGG................211.000.00-------------------------------------------------------1.00---------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGGCCT................................................................................2711.003.00-1.00---------------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGG...................................................................................2211.001.00--------------------------------------------------------1.00--------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGG........................................................................................1811.001.00---------------------------------------------------------1.00-------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAAGA................................................221.000.00---------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAC......................................................................................2211.002.00----------------------------------1.00------------------------------------------------------------------------
..................................................................................................................................................TGGGCGCAGGGATGGGAGTGGCCAC...............................................................................251.000.00------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GCAGGGGGTGGCAGAACT.......1811.001.00----------------------------------------------------1.00------------------------------------------------------
....................................................................................................................................ATGGTCTGGATACCTGGGCGCAGGGACGGG........................................................................................301.000.00-------1.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGGCAT................................................................................2511.001.00---1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGCT.................................................................................2511.003.00-------------------------1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGGCAAACAGAGAGATA..................................181.000.00-------------------------------------------------1.00---------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAG......................................................................................1911.001.00-----------1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAAAT................................................221.000.00---------------------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTGGC..................................................................................2311.001.00---------------------------------------------------------------------------------1.00-------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTAAT..................................................................................2511.006.00----------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACCTCTCATCTGGCTGCCCAGTT................................................231.000.00---------------------------------------------------------------1.00-------------------------------------------
..................................................................................................................................................TGGGCGCAGGGATGGGAGTG....................................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00--------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGT.....................................................................................2011.001.00--------------------------------------------1.00--------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGATAG....................................................................................2311.003.00--------------------------1.00--------------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTAA...................................................................................2411.006.00----------------1.00------------------------------------------------------------------------------------------
...........................................................................................................TATGTGGGAAGCAGGTGGAGGGCAG......................................................................................................................2511.001.00-------------------1.00---------------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGGGA.....................................................................................2311.007.00--------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................TGTGGGAAGCAGGTGGAGAGG........................................................................................................................211.000.00--------------------------------1.00--------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGGC..................................................................................2511.001.00---------------1.00-------------------------------------------------------------------------------------------
................................................................TTTTTGAGAAGAGCAAGCCACAG...................................................................................................................................................................2311.001.00-------------------------------------------------------------------------1.00---------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCATTA................................................221.000.00----------1.00------------------------------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGTA..................................................................................2511.001.00---------------------------------------------------1.00-------------------------------------------------------
......................................................................................................................................................................................TCTCATCTGGCTGCCCAGTTCT..............................................221.000.00-------------------------------------------------------------------------------------------1.00---------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGCA.................................................................................2511.003.00-----1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGGCAAACAGAGAGCCG..................................1811.001.00----------------1.00------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGCCTTTT.............................................................................2911.004.00---1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAAAG....................................................................................2411.002.00-----1.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAT..................................................201.000.00----------------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAGAC....................................................................................2411.0010.00------------1.00----------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGTGGCCA................................................................................2611.001.00--------1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAG......................................................................................2011.001.00----1.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCTCTCATCTGGCTGCCCAGAGA...............................................231.000.00----1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTG....................................................................................2311.001.00------------------------------------------------------------------------------------------------1.00----------
.................................................................................................................................................CTGGGCGCAGGGATGGGAGTG....................................................................................2111.001.00-------------------------------------------------------------------1.00---------------------------------------
...............................................................................................................................................ACCTGGGCGCAGGGATGGGAGTGGCCAGGAGTG..........................................................................3311.001.00-----------------------------------------------1.00-----------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAGTG....................................................................................2411.001.00-----------------------------------------1.00-----------------------------------------------------------------
................................................................................................................GGGAAGCAGGTGGAGTTA........................................................................................................................181.000.00----------------------------------------------------------------------------------------1.00------------------
................................................................................................................................................CCTGGGCGCAGGGATGGGAGA.....................................................................................2111.001.00-------------------------------------------1.00---------------------------------------------------------------
..............................................................................................................................................TACCTGGGCGCAGGGATGGGAT......................................................................................2211.002.00-------------------------------------------------------------1.00---------------------------------------------
............................................................................................................................................................................................................AACAGAGAGCCGTGG...............................1530.670.67-------0.33-------------------------------------------------------------------------------------------------0.33-
........................................................................................................................................TCTGGATACCTGGGCGC.................................................................................................1720.500.50--------------------------------------------------------------------------------------------------------0.50--
..................................................................................................................................................................................................................................CAGGGGGTGGCAGAACT.......1720.500.50-------------------------------------------------------------------------------------------------------0.50---
....................................................................................................................................................................................................................................GGGGGTGGCAGAACT.......1550.200.20---------------------------------------0.20-------------------------------------------------------------------
.................................................................................................................GGAAGCAGGTGGAGGGC........................................................................................................................1750.200.20--------------------------------------0.20--------------------------------------------------------------------
.......................................................................................................................AGGTGGAGGGCAGATG...................................................................................................................1650.200.20----------------------------------------------------------------------------------------------------------0.20
...................................................................................................................................................................................................................................AGGGGGTGGCAGAAC........15100.100.10---------------------------------------------------------------------------------------------------------0.10-

Antisense strand
ATCATGGAAGGCCTCCGAGGAGGTGATGTGAGGAGTGGACAGATGAGGTCAGGCCATGAGGGTGTTTTTGAGAAGAGCAAGCCACAGAGTGCACCAGGTCACTCACTTATGTGGGAAGCAGGTGGAGGGCAGATGGTCTGGATACCTGGGCGCAGGGATGGGAGTGGCCAGGAGTGCTGACCTCTCATCTGGCTGCCCAGGGCAAACAGAGAGCCGTGGTCGGCTGCAGGGGGTGGCAGAACTGCGTCTG
................................................................................................................................................(((((((((..((((((((..((.(((.....))).)))))))))).)).))))))).................................................
.........................................................................................................................................138.................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR189786SRR038861(GSM458544)
MM466. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR038859(GSM458542)
MM386. (cell line)		TAX577580(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR189784SRR037938(GSM510476)
293Red. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR343334GSM416733(GSM416733)
HEK293. (cell line)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR343335TAX577740(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		TAX577589(Rovira)
total RNA. (breast)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR038860(GSM458543)
MM426. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................GGTGATGTGAGGAGTGGA................................................................................................................................................................................................................... 1812.002.00---------------------------------------------1.00--------------1.00----------------------------------------------
................................................................TTTTTGAGAAGAGCAGAG........................................................................................................................................................................ 181.000.00--------------------------------1.00--------------------------------------------------------------------------
.....................GGTGATGTGAGGAGTGGACAGA............................................................................................................................................................................................................... 2211.001.00----------------------------------------------------------1.00------------------------------------------------
..........................................................................................................................................TGGATACCTGGGCGCAGGGA............................................................................................ 2011.001.00---1.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CGTGGTCGGCTGC....................... 13100.100.10-------0.10---------------------------------------------------------------------------------------------------