ID: uc002dva.1
GENE: TAOK2(13)
chr16:29996850-29997028+


(1)
AGO2.ip
(6)
B-CELL
(6)
BRAIN
(6)
BREAST
(15)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(6)
HELA
(5)
LIVER
(1)
OTHER
(8)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
TGGAGGCACAGAAGCGGACCTACAAACTTCGCAAGGAACAGCTGAAGGAGGTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCGCCCAGGAGCTCCAGGAGAACCCCAGCACTCCCAAGCGGGAGAAGGCCGAGTGGCT
..................................................((((((.((((..((..(((...(((.(((.(((....)))..))).)))...))).))..))))..))..))))......................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925F181A(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)
TAX577738(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189786SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR189784DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................GTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCGCCCAG..................................................79135.0035.0017.00-18.00------------------------------------------------------------
............................................................................................................CTTCCCTCTGCACTCGCCCAGT.................................................22131.001.00-19.00---------------1.001.001.00-----------1.00-1.001.001.00-1.00-1.00-1.00--1.00-----1.00------------
..................................................GTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCGCCC....................................................77112.0012.0011.00-------------------------------------1.00------------------------
...............................CAAGGAACAGCTGAAGGAGGTGAGCTA.........................................................................................................................2718.008.00---8.00-----------------------------------------------------------
.................................AGGAACAGCTGAAGGAG.................................................................................................................................1726.506.50-------0.50------1.000.500.50-------------------------------------0.500.500.500.500.500.500.500.50-
..................................................GTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCGCC.....................................................7615.005.005.00--------------------------------------------------------------
................................AAGGAACAGCTGAAGGAG.................................................................................................................................1814.004.00-------1.00-1.00-------------------1.00----------1.00----------------------
............................................................................................................CTTCCCTCTGCACTCGCCCAAT.................................................224.000.00-4.00-------------------------------------------------------------
............................................................................................................CTTCCCTCTGCACTCGCCCAGA.................................................2214.001.00-3.00---------------------------------------------1.00---------------
........................AACTTCGCAAGGAACAGCT........................................................................................................................................1913.003.00-----3.00---------------------------------------------------------
..................................................GTGAGCTAGGGCTGCTTGG..............................................................................................................1912.002.00--------1.00-------------------1.00----------------------------------
........................................................TAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCG.......................................................6812.002.002.00--------------------------------------------------------------
..............................GCAAGGAACAGCTGAAGGA..................................................................................................................................1912.002.00-----------2.00---------------------------------------------------
.............................CGCAAGGAACAGCTGAAGGAGGA...............................................................................................................................2312.001.00--------1.00-----------------------1.00------------------------------
..................................................GTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTC........................................................7312.002.00----2.00----------------------------------------------------------
............................................................................................................CTTCCCTCTGCACTCGCCCAG..................................................2111.001.00----------1.00----------------------------------------------------
.................................AGGAACAGCTGAAGGAGGAGCT............................................................................................................................221.000.00---------1.00-----------------------------------------------------
.............................CGCAAGGAACAGCTGAAGGAGGAGCT............................................................................................................................2611.001.00------1.00--------------------------------------------------------
........CAGAAGCGGACCTACAAACTTC.....................................................................................................................................................2211.001.00------1.00--------------------------------------------------------
.......ACAGAAGCGGACCTACAAACTTCG....................................................................................................................................................2411.001.00-----------------------1.00---------------------------------------
.................................AGGAACAGCTGAAGGAGGTGA.............................................................................................................................2111.001.00--------------------------1.00------------------------------------
................................AAGGAACAGCTGAAGGAGGTGAGC...........................................................................................................................2411.001.00----------1.00----------------------------------------------------
........................................................TAGGGCTGCTTGGGGGCGGAG......................................................................................................2111.001.00------------------------------------------1.00--------------------
............................TCGCAAGGAACAGCTGAAGGAGGAGC.............................................................................................................................261.000.00-------------1.00-------------------------------------------------
.................................AGGAACAGCTGAAGGAGGTGAGCTAGG.......................................................................................................................2711.001.00----------------1.00----------------------------------------------
..........................................................................................................TGCTTCCCTCTGCACTCGCCCAGA.................................................241.000.00---------------1.00-----------------------------------------------
...........................TTCGCAAGGAACAGCTGAAGGAGG................................................................................................................................2411.001.00-------------------------------------------1.00-------------------
.............................CGCAAGGAACAGCTGAAGGAGG................................................................................................................................2211.001.00------------------------1.00--------------------------------------
..................................................GTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCGCCCATT.................................................801.000.00----------------------------------------------1.00----------------
.............................CGCAAGGAACAGCTGAAGG...................................................................................................................................1911.001.00--------------------1.00------------------------------------------
..............CGGACCTACAAACTTCGCAAGGAACAGCTGA......................................................................................................................................3111.001.00-------------1.00-------------------------------------------------
............................................................................................................CTTCCCTCTGCACTCGCCCAA..................................................211.000.00---------------------------------------------1.00-----------------
.................................................................................................................................GAGCTCCAGGAGAACCCC................................1811.001.00---------------------1.00-----------------------------------------
...................CTACAAACTTCGCAAGGAACAGCT........................................................................................................................................2411.001.00------------1.00--------------------------------------------------
...................................................TGAGCTAGGGCTGCTTGGGGGCGGAGC.....................................................................................................2711.001.00------------------------------------------------1.00--------------
............................................................................................................................................................AAGCGGGAGAAGGCCGAGTGGCT2311.001.00------------------------------1.00--------------------------------
..............CGGACCTACAAACTTCGCAAGGAACA...........................................................................................................................................2611.001.00----------------------1.00----------------------------------------
.........AGAAGCGGACCTACAAACTTC.....................................................................................................................................................2111.001.00------1.00--------------------------------------------------------
..................................................GTGAGCTAGGGCTGCTTGGGGGCGG........................................................................................................2511.001.00-------------------------1.00-------------------------------------
...........................................................................................................GCTTCCCTCTGCACTCGCCCAGT.................................................231.000.00-----------------------------------------------------1.00---------
............................................................................................................................................................AAGCGGGAGAAGGCCGACA....191.000.00---------------------------1.00-----------------------------------
.................................AGGAACAGCTGAAGGAGT................................................................................................................................1821.006.50------------------------------------1.00--------------------------
....................................................................GGGGCGGAGCCGATGGCGA............................................................................................1911.001.00-------------------------------------------------1.00-------------
..................................GGAACAGCTGAAGGAGGTGAG............................................................................................................................2111.001.00-------1.00-------------------------------------------------------
............................................................................................................CTTCCCTCTGCACTCGCCCAGTAT...............................................2411.001.00----------------------------------------------------1.00----------
..................................................................................................................................AGCTCCAGGAGAACCCCAGCACTCC........................2511.001.00------------1.00--------------------------------------------------
..................................................GTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTT....................................................................6111.001.00----1.00----------------------------------------------------------
..................................GGAACAGCTGAAGGAG.................................................................................................................................1640.750.75--------------0.50---------------------------------------0.25--------
..............................GCAAGGAACAGCTGAA.....................................................................................................................................1650.200.20-----------------0.20---------------------------------------------
...............................................................................................................................................................CGGGAGAAGGCCGA......1470.140.14--------------------------------------------------------------0.14

Antisense strand
TGGAGGCACAGAAGCGGACCTACAAACTTCGCAAGGAACAGCTGAAGGAGGTGAGCTAGGGCTGCTTGGGGGCGGAGCCGATGGCGAGCCAGGTGGGTCCTGACCCTGCTTCCCTCTGCACTCGCCCAGGAGCTCCAGGAGAACCCCAGCACTCCCAAGCGGGAGAAGGCCGAGTGGCT
..................................................((((((.((((..((..(((...(((.(((.(((....)))..))).)))...))).))..))))..))..))))......................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925F181A(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)
TAX577738(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189786SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR189784DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...................................................................GGGGGCGGAGCCGATGC............................................................................................... 171.000.00---------------------------------------------------1.00-----------