ID: uc001zqj.2
GENE: CDAN1(9)
chr15:43021275-43021476-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(18)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
UTERUS

Sense strand
CTACCACCAGCCTGGGAGCCCAGCCTTCCCAGACCAGCCAGGGGCTGCAGGTAAGGGCAGGGCGGAGACAGCCGTGGGGAAAATGAGGGGGGGTTGGGGGCGGGGACAGGGAGGCTGGAGGAAGCCTTGCTGCCTCTCCCTCCTCCCCCCAGGCACAGCTCGCCCAGGCCTTTTTCCACAACCAGCCGCCCTCCTTGCGCCG
........................................................................................(((((..(((((.((((.(((.((((((......)))))).))))))).))).))..)))))....................................................
........................................................................................89.............................................................152................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189786SRR189782DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR189785TAX577745(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR189787DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)
.............................................................................................TTGGGGGCGGGGACAGGGAGGC.......................................................................................2218.008.007.00------------------1.00-----------------------------------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCCCAGT.................................................2317.003.00------2.001.00---1.00----1.00--------------------------1.00-----1.00-----------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGT....................................................................................2415.002.003.00---1.00------------1.00-------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGTTT..................................................................................2615.002.005.00------------------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGG....................................................................................2414.004.001.001.00--------------------------------------------1.00---1.00----------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCTT.....................................................................................2414.001.004.00------------------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTAT....................................................................................2414.003.003.00---1.00--------------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCT......................................................................................2213.003.001.00---1.00--------------------------------1.00-----------------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCCCAG..................................................2213.003.00---1.00--------------1.00-1.00----------------------------------------------
............................................................................................GTTGGGGGCGGGGACAGGGAGGCTGG....................................................................................2613.003.00-3.00-----------------------------------------------------------------
............................................................................................GTTGGGGGCGGGGACAGGGAGGCT......................................................................................2413.003.00-3.00-----------------------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAG.........................................................................................2022.502.501.50----------0.500.50------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTG.....................................................................................2312.002.001.00-------------------------------------------------------1.00----------
.............................................................................................TTGGGGGCGGGGACAGGGAGA........................................................................................2122.002.50--------------------------------------------1.00------1.00---------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCCT.....................................................................................2412.008.00--1.00-------------------------------------------------------1.00--------
..................................................GTAAGGGCAGGGCGGAGACA....................................................................................................................................2012.002.00-----------------------1.00-------1.00-----------------------------------
............................................................................................GTTGGGGGCGGGGACAGGGAGGC.......................................................................................2312.002.002.00------------------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGC.......................................................................................2111.001.00------------1.00------------------------------------------------------
......................GCCTTCCCAGACCAGCCAGGGGCTGCAG........................................................................................................................................................2811.001.00-----1.00-------------------------------------------------------------
.....................................................................................................................................CTCTCCCTCCTCCCCCCAGGA................................................211.000.00-----------------------------1.00-------------------------------------
............................................................................................GTTGGGGGCGGGGACAGGGAA.........................................................................................211.000.00-1.00-----------------------------------------------------------------
........................................................GCAGGGCGGAGACAGCGTGG..............................................................................................................................201.000.00---1.00---------------------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCTGG....................................................................................2511.001.001.00------------------------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCTAT....................................................................................2511.001.00---------1.00---------------------------------------------------------
.................GCCCAGCCTTCCCAGTTCT......................................................................................................................................................................191.000.00----------------------------------1.00--------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGAAT.....................................................................................241.000.00------------------------------------------------------1.00------------
..................................................................................................................CTGGAGGAAGCCTTGAAC......................................................................181.000.00------------------------------------1.00------------------------------
........................................................GCAGGGCGGAGACAGAGGA...............................................................................................................................191.000.00----------------------------------------1.00--------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCTA.....................................................................................2411.001.00------------------------------------------1.00------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGGTAG.................................................................................2711.004.00-----------------------------------------1.00-------------------------
......................................................................................................................................TCTCCCTCCTCCCCCCAGTTT...............................................211.000.00--------------------------------1.00----------------------------------
..............................................................................................TGGGGGCGGGGACAGGTCTG........................................................................................201.000.00---1.00---------------------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCTAA....................................................................................2511.001.00-----------------------------------1.00-------------------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCCCAGAAG...............................................2511.003.00-------------1.00-----------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGGT...................................................................................2511.004.00---------------------------------------------1.00---------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCCCAGC.................................................2311.003.00--1.00----------------------------------------------------------------
.....................................................AGGGCAGGGCGGAGACTTAG.................................................................................................................................201.000.00----------1.00--------------------------------------------------------
.........................................................................................................ACAGGGAGGCTGGAGGAAGC.............................................................................2011.001.00------------------------------1.00------------------------------------
....................................................................................................................................CCTCTCCCTCCTCCCCCCCCCC................................................221.000.00---------------------------1.00---------------------------------------
...................................................................................TGAGGGGGGGTTGGGGGGTG...................................................................................................201.000.00---------------------------------------------------------1.00---------
.............................................TGCAGGTAAGGGCAGTCT...........................................................................................................................................181.000.00------------------------1.00------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAT.........................................................................................201.000.00----------------------------1.00--------------------------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCCCAGA.................................................2311.003.00---------1.00---------------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCATAT...................................................................................2611.008.00---------------1.00---------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCTC.....................................................................................2411.001.00--1.00----------------------------------------------------------------
......................................................................................GGGGGGGTTGGGGGCGGGCCG...............................................................................................2111.001.00---1.00---------------------------------------------------------------
....................................................AAGGGCAGGGCGGAGAG.....................................................................................................................................171.000.00---------------------------------------1.00---------------------------
......................................................................................GGGGGGGTTGGGGGCGGG..................................................................................................1811.001.00--------------------------------------1.00----------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGTAA..................................................................................2611.002.00-----------------------------------------------------------1.00-------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGCCT..................................................................................2611.002.00--1.00----------------------------------------------------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCC.....................................................1911.001.00-----1.00-------------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTT.....................................................................................2311.003.001.00------------------------------------------------------------------
.............................................................................................TTGGGGGCGGGGACAGGGAGGCT......................................................................................2311.001.001.00------------------------------------------------------------------
..................................................................................................................................TGCCTCTCCCTCCTCCCCCCAGTA................................................2411.003.00-------1.00-----------------------------------------------------------
..............................................................................................TGGGGGCGGGGACAGGGAGGCTGGTAT.................................................................................2711.004.00---------------------------------1.00---------------------------------
.............................................................................................................GGAGGCTGGAGGAAGTATC..........................................................................191.000.00--------1.00----------------------------------------------------------
...................................................................................................................TGGAGGAAGCCTTGCTGC.....................................................................1811.001.00-----------------------------------------------1.00-------------------
.................................................................................................................................CTGCCTCTCCCTCCTCCCCCCA...................................................2211.001.00-----------------------------------------------------1.00-------------
........................................GGGGCTGCAGGTAAGCCG................................................................................................................................................181.000.00-------------------------------------------------------1.00-----------
.............................................................................................TTGGGGGCGGGGACAGGACTG........................................................................................2121.000.50--------------------------1.00----------------------------------------
.....................................................................................................................................CTCTCCCTCCTCCCCCCAGT.................................................2030.670.33--------------0.33------------------------------------------------0.33---
.............................................................................................TTGGGGGCGGGGACAGG............................................................................................1720.500.50------------------------------------------------------------0.50------
....................................................................................................................................CCTCTCCCTCCTCCCCCCAGG.................................................2120.500.50--------------------------------------------------------------0.50----
.....................................................................................................................................CTCTCCCTCCTCCCCCCAG..................................................1930.330.33-----------------------------------------------------------------0.33-
.....................................................................................................................................CTCTCCCTCCTCCCCCCAGTTAA..............................................2330.330.33-------------0.33-----------------------------------------------------
.......................................................................................GGGGGGTTGGGGGCGGGG.................................................................................................18100.100.10------------------------------------------------------------------0.10

Antisense strand
CTACCACCAGCCTGGGAGCCCAGCCTTCCCAGACCAGCCAGGGGCTGCAGGTAAGGGCAGGGCGGAGACAGCCGTGGGGAAAATGAGGGGGGGTTGGGGGCGGGGACAGGGAGGCTGGAGGAAGCCTTGCTGCCTCTCCCTCCTCCCCCCAGGCACAGCTCGCCCAGGCCTTTTTCCACAACCAGCCGCCCTCCTTGCGCCG
........................................................................................(((((..(((((.((((.(((.((((((......)))))).))))))).))).))..)))))....................................................
........................................................................................89.............................................................152................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189786SRR189782DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR189785TAX577745(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR189787DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)
...............GAGCCCAGCCTTCCCAAGG........................................................................................................................................................................ 191.000.00---------------------1.00---------------------------------------------
.............................................................................................................................................................GCTCGCCCAGGCCTTTGGAA......................... 201.000.00----------------------1.00--------------------------------------------
.......................................................................................................................................................GGCACAGCTCGCCCAGGCCTT.............................. 2111.001.00-------------------------1.00-----------------------------------------
..........................TCCCAGACCAGCCAGGGC.............................................................................................................................................................. 181.000.00----------1.00--------------------------------------------------------
...........................................................................................................................GCCTTGCTGCCTCTCCCTCC........................................................... 2011.001.00----------------------------------------------------1.00--------------
.....................................CCAGGGGCTGCAGGTAAGGGCA............................................................................................................................................... 2211.001.00--------------1.00----------------------------------------------------
.................................................................................................GGGCGGGGACAGGGAATTT...................................................................................... 191.000.00------------------------------------------------1.00------------------
..................CCCAGCCTTCCCAGAGTA...................................................................................................................................................................... 181.000.00--------1.00----------------------------------------------------------
..ACCACCAGCCTGGGAGCCC..................................................................................................................................................................................... 1920.500.50-------------------------------------------------------------0.50-----
.............................................................GCGGAGACAGCCGTG.............................................................................................................................. 1530.330.33----------------------------------------------------------------0.33--