ID: uc001war.28
GENE: CHD8(28)
chr14:21881106-21881355-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(5)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(7)
BRAIN 		(5)
BREAST 		(23)
CELL-LINE 		(3)
HEART 		(5)
HELA 		(5)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGTAGCAGGTGAGAAGTCAGGTATAGACCCTGGTAAATTCATAGGATTTGCTGTTATGAAAAAGGAGAACACCCATCGGATAGCTTCTAATTTCTTTAAAAATTTTGAAGTAGGATTCTCTGCTAAAGGTGAGGTAGAGGAGTGGGTTTACTGGACAGTGATCTTTTGGTCTTATTGTTTGGTTTCCTAACTCATCTAGGATGAAGAGCCCTTTAATCCAGACTACGTAGAGGTGGATAGGATATTGGA
.......................................................................................................................................((((.(((((((...((..((((((((((....))))..))))))..))..)))).))).))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784SRR189783SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGAC.............................................................................................22130.0030.00-5.00-5.00-4.002.00------2.00---2.001.00--------1.00------1.00--------1.001.00-----1.00-----1.00----1.001.00----1.00----------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAGT.................................................22115.0011.001.00---6.00--3.00-------------------------------------1.00---1.00---1.00------1.00----1.00------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAG..................................................21111.0011.006.00---------1.003.00------------------------------1.00-----------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGA..............................................................................................2117.007.00---------------2.00---------------------1.00--1.00-------------1.00---------------1.00-1.00-----
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGAC.............................................................................................2316.006.00-4.00-----------------2.00----------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACAGT..........................................................................................2516.006.00---2.00------------------1.00---2.001.00--------------------------------------------------
..................................................................................................................................................................................TTTGGTTTCCTAACTCATCTAG..................................................2214.004.002.00---------2.00-------------------------------------------------------------------
............................................................................................................................................................................................................................AGACTACGTAGAGGTGGATAGGATA.....2513.003.00-----2.00--1.00---------------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACT.................................................................................................1813.003.00---------1.00-------------2.00------------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGAAA............................................................................................2412.002.00------------------------2.00-----------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACT.................................................................................................1912.002.00------------2.00-----------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTAC..................................................................................................1712.002.00---------2.00--------------------------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGA..............................................................................................2212.002.00-------------------------------1.00----1.00-----------------------------------------
............................................................................................................................................................................................................................AGACTACGTAGAGGTGGATAGGATATTGG.2912.002.00--------------------2.00---------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGG...............................................................................................2012.002.00---------------------2.00--------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGAA.............................................................................................2211.007.00--------------------------------------------------------------------1.00---------
.....................................................................................................................................................................................................................TTAATCCAGACTACGTAGAGGT...............2211.001.00------------------1.00-----------------------------------------------------------
............................................................................................................................................................................................................................AGACTACGTAGAGGTGGATA..........2011.001.00--------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................GAGGTGGATAGGATATT...1721.001.00----------------------------------------------1.00-------------------------------
......................................................................CACCCATCGGATAGCT....................................................................................................................................................................1611.001.00---------------------------------1.00--------------------------------------------
..........................................TAGGATTTGCTGTTATGAAAAAGGAGAACACCC...............................................................................................................................................................................3311.001.00------1.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................TCCAGACTACGTAGAGGTGGATAGGA.......2611.001.00--------------------------------1.00---------------------------------------------
.......................................................................................................................................................................................................................AATCCAGACTACGTAGAGGT...............2011.001.00----------------1.00-------------------------------------------------------------
..................................................................................................................................TGAGGTAGAGGAGTGTAGA.....................................................................................................191.000.00----------------------------------------------------------------1.00-------------
..........................................................................................................................................................................................CCTAACTCATCTAGGATGAAGAGCCCT.....................................2711.001.00----------------------------1.00-------------------------------------------------
.............................................................................................................................................................................................................................GACTACGTAGAGGTGGATAGGATATTG..2711.001.00--------1.00---------------------------------------------------------------------
.............................................................................................................................AAAGGTGAGGTAGAGGAGTG.........................................................................................................2011.001.00-------------------------1.00----------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGAAT............................................................................................2411.002.00-----------------------------------------------------------1.00------------------
....................................................................................................................................................................................................................TTTAATCCAGACTACGTAGAGG................2211.001.00-----------------------------------------------------------------------1.00------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAAT.................................................221.000.001.00-----------------------------------------------------------------------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTATT.................................................221.000.00-------1.00----------------------------------------------------------------------
......................................................................................................................................................................................................AGGATGAAGAGCCCTTT...................................1711.001.00--------------1.00---------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACAGTGAT.......................................................................................2811.001.00----------------------1.00-------------------------------------------------------
........................................................................................................................CTGCTAAAGGTGAGGTAGAGGAGTGGG.......................................................................................................2711.001.00---------------------------------------------------------1.00--------------------
............................................................................................................................TAAAGGTGAGGTAGAGGAGTG.........................................................................................................2111.001.00------------------------------1.00-----------------------------------------------
..................................................................................................................................................................................................................................CGTAGAGGTGGATAGG........1611.001.00----------------1.00-------------------------------------------------------------
.......................................................................................................................................................................................................................AATCCAGACTACGTAGAGGTGGAT...........2411.001.00-----------------------------------------------1.00------------------------------
......................................................................................................................................................................................................AGGATGAAGAGCCCTTTAATC...............................2111.001.00------------------------------------------------1.00-----------------------------
.............................................................................................................................................................................................................AGAGCCCTTTAATCCAGACT.........................2011.001.00----------------------------------------------------1.00-------------------------
..................................................................................................................................TGAGGTAGAGGAGTGTAA......................................................................................................181.000.00--------------1.00---------------------------------------------------------------
..............................................................AAGGAGAACACCCATCGGATAGC.....................................................................................................................................................................2311.001.00------------------------------------------------------------------1.00-----------
..................................................................................................................................TGAGGTAGAGGAGTGGATGG....................................................................................................201.000.001.00-----------------------------------------------------------------------------
................................................................................................................................................................................................................................TACGTAGAGGTGGATAGGATATTT..241.000.00-------------------------1.00----------------------------------------------------
..................................................................................................................................TGAGGTAGAGGAGTGGGTAGTT..................................................................................................221.000.00---------------------------------------------------1.00--------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACAG...........................................................................................2411.001.00------1.00-----------------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACA............................................................................................2311.001.00---1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACGTAGAGGTGGATAGGATA.....2011.001.00-----------------------------------1.00------------------------------------------
..................................................................................................................................................................................TTTGGTTTCCTAACTCATCTAGT.................................................2311.004.00---------------------------------------------------------------------1.00--------
...........................................................................................................................................................................................................................CAGACTACGTAGAGGTGGATAG.........2211.001.00--------1.00---------------------------------------------------------------------
......................................................................................TCTAATTTCTTTAAAACCAC................................................................................................................................................201.000.00---------------------------------------1.00--------------------------------------
.................................................................................................................GGATTCTCTGCTAAAGGTGAGGTAG................................................................................................................2511.001.00-----------------------------1.00------------------------------------------------
.............................................................................................................................................................................................................AGAGCCCTTTAATCCAGACTACGTAGAGGTGG.............3211.001.00------1.00-----------------------------------------------------------------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAGC.................................................2211.0011.00---------------------------------------------------------------1.00--------------
.................................................................................................................................................GGTTTACTGGACAGTGA........................................................................................1720.500.50-------------------------------------------------------------------------0.50----
.........................................................................................................................................................................................................ATGAAGAGCCCTTTAAT................................1730.330.33--------------------------------------------------------------------------0.33---
...........................................................................................................................................................................................................................CAGACTACGTAGAG.................1440.250.25---------------------------------------------------------------------------0.25--

Antisense strand
TGGTAGCAGGTGAGAAGTCAGGTATAGACCCTGGTAAATTCATAGGATTTGCTGTTATGAAAAAGGAGAACACCCATCGGATAGCTTCTAATTTCTTTAAAAATTTTGAAGTAGGATTCTCTGCTAAAGGTGAGGTAGAGGAGTGGGTTTACTGGACAGTGATCTTTTGGTCTTATTGTTTGGTTTCCTAACTCATCTAGGATGAAGAGCCCTTTAATCCAGACTACGTAGAGGTGGATAGGATATTGGA
.......................................................................................................................................((((.(((((((...((..((((((((((....))))..))))))..))..)))).))).))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784SRR189783SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		DRR001482(DRX001036)
Hela long total cell fraction, control. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................CTTTTGGTCTTATTGGATC.................................................................... 198.000.00--8.00---------------------------------------------------------------------------
.........................................................................................................................................GAGGAGTGGGTTTACTGGAC............................................................................................. 2011.001.00-----------------------------------------1.00------------------------------------
...............................................................................................................................................................................................CTCATCTAGGATGAAGCAT........................................ 191.000.00----------------------------------------------------------1.00-------------------
............................................................................................................AAGTAGGATTCTCTGATG............................................................................................................................ 181.000.001.00-----------------------------------------------------------------------------
.......................................................................................................................................................................TGGTCTTATTGTTTGGCT................................................................. 181.000.00--------------------------------------1.00---------------------------------------
.....................................................................................................................TCTCTGCTAAAGGTGCT.................................................................................................................... 171.000.00-------------------------------------------------------1.00----------------------
...............................................................................................................................................................................................................AGCCCTTTAATCCAG............................ 1560.170.17-----------------------------------------------------------------------------0.17
..............................................................................................................................................................................................ACTCATCTAGGATGA............................................. 1560.170.17----------------------------------------------------------------------------0.17-