ID: uc001vzr.2
GENE: ZNF219(4)
chr14:21559250-21559619-


(1)
AGO1.ip
(2)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(6)
BREAST
(12)
CELL-LINE
(5)
CERVIX
(4)
HEART
(1)
HELA
(1)
KIDNEY
(4)
LIVER
(1)
OTHER
(16)
SKIN
(1)
XRN.ip

Sense strand
ATCTTTCCGCTCAGCACATCACCTCAAAGTGCATCTGCGAGTGCACACAGGTGAGGGAGGCAGCCTCCGGCGTGGAGAGGGGACTGGGGGCGGGCAGAAAGGTGAGGGCTACCGAAACACTAGGAGGTGAAGTTTGTTCCGAAGCCTTCAGTTTGGCTGGATGAGATCACTTGGGAAACGCTCCTTTATTAAATCAAAGTGGGTGGGAGACGCAGTGCCCTTTCTTGGTTCTGAGAATGAGGTCTGTAAATTGGGCGAAATTCGGGTGGGTGCGTGCAGTCATCGTGACCCCGTGACCCTATCGCACCCACTCTCCCCAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTACGCGGGCACCCAGTCC
.......................................................................................................................................................................................................................................................................(((((((((((....((((.((......)))))).....))))))))))).........................................................
...............................................................................................................................................................................................................................................................256.............................................................320................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR015362(GSM380327)
Naïve B Cell (Naive138). (B cell)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
GSM532880(GSM532880)
G659T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTCC......................................................21122.0022.0017.00-3.00------------------1.00---------------1.00----------------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTCT........................................................................................228.000.001.005.00----------------------------------------1.00-1.00---------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTCA........................................................................................2217.007.00-6.00--------------------------------------------1.00-------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTCCC.....................................................2213.003.001.002.00----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTTT......................................................2113.001.002.00------------------------1.00----------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACTACGCGGGCACCCAGT..1812.002.00-------2.00----------------------------------------------
.......................................................................GTGGAGAGGGGACTGGGG.........................................................................................................................................................................................................................................................................................1822.002.00--------2.00---------------------------------------------
.................................TCTGCGAGTGCACACAGGCG.............................................................................................................................................................................................................................................................................................................................202.000.00------------------------------1.00--1.00--------------------
.............................................................................................................................................................................................................................................................................................................TCGCACCCACTCTCCCCAGGCGAGCGGCCCC......................................312.000.00----2.00-------------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTTTCC......................................................212.000.002.00-----------------------------------------------------
.....................................................................................................................................................................................................................................................................TCGGGTGGGTGCGTGCAGTCA........................................................................................2112.002.00------1.00--1.00--------------------------------------------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTAGA.......................................................................................232.000.00-2.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................................GACCCTATCGCACCCACTCTCC......................................................2211.001.001.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCT........................................................1911.001.00--------------------------------------1.00---------------
...........................................................................................................................................................GCTGGATGAGATCACTTGGGAAACGC.............................................................................................................................................................................................2611.001.00-------------------------------1.00----------------------
.........................................................................GGAGAGGGGACTGGGCGG.......................................................................................................................................................................................................................................................................................181.000.00--------------1.00---------------------------------------
.......................................................................................................................................................................................................................................TGAGAATGAGGTCTGTAAATTG.....................................................................................................................2211.001.00----------------------1.00-------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTCT......................................................2111.001.00---------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTC.......................................................2011.001.001.00-----------------------------------------------------
................................ATCTGCGAGTGCACACAG................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------1.00-------------------------
........................................................................................................................................................................................................GGGTGGGAGACGCAGTGGAAA.....................................................................................................................................................211.000.00----------1.00-------------------------------------------
.............................................................................................................................................................................................................................................TGAGGTCTGTAAATTTCTG..................................................................................................................191.000.00-----------------------------------1.00------------------
.........................................................................GGAGAGGGGACTGGGCG........................................................................................................................................................................................................................................................................................171.000.00--------------------------1.00---------------------------
........................................................................................................................................................................................................................................................................................................CCCTATCGCACCCACTCT........................................................1811.001.00-----------------------------1.00------------------------
............................................................................................................................................................................................................................................ATGAGGTCTGTAAATTGGGCG.................................................................................................................2111.001.00---1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTAA........................................................................................221.000.00-1.00----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GACTACGCGGGCACCCAG...1811.001.00---------------------------------------1.00--------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTGTCC......................................................211.000.001.00-----------------------------------------------------
....................ACCTCAAAGTGCATCTG.............................................................................................................................................................................................................................................................................................................................................1711.001.00-------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................GACCCTATCGCACCCACTCTC.......................................................2111.001.00------------------------------------1.00-----------------
....................................................................................TGGGGGCGGGCAGAAAAA............................................................................................................................................................................................................................................................................181.000.00-----------------------1.00------------------------------
.....................................................................GCGTGGAGAGGGGACGCAA..........................................................................................................................................................................................................................................................................................191.000.00----------------------------------1.00-------------------
.......CGCTCAGCACATCACCTCAAA......................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------1.00--------
..........................AAGTGCATCTGCGAGGGCA.....................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00------------
.......................................................................................GGGCGGGCAGAAAGGGAA.........................................................................................................................................................................................................................................................................181.000.00-----------1.00------------------------------------------
..........................................................................................CGGGCAGAAAGGTGAGGGC.....................................................................................................................................................................................................................................................................1920.500.50-----------------------------------------------0.50------
........................................................................TGGAGAGGGGACTGGGG.........................................................................................................................................................................................................................................................................................1740.500.50--------------------------------------------------0.250.25--
......................CTCAAAGTGCATCTGC............................................................................................................................................................................................................................................................................................................................................1630.330.33-------------------------------------------------0.33----
.............................................................................................................................................................................................................................................................................................................................................................GACTACGCGGGCA........1330.330.33------------------------------------------------0.33-----
.................................................................TCCGGCGTGGAGAG...................................................................................................................................................................................................................................................................................................1460.170.17----------------------------------------------------0.17-
........................................................................TGGAGAGGGGACTGGG..........................................................................................................................................................................................................................................................................................1680.120.12----------0.12-------------------------------------------

Antisense strand
ATCTTTCCGCTCAGCACATCACCTCAAAGTGCATCTGCGAGTGCACACAGGTGAGGGAGGCAGCCTCCGGCGTGGAGAGGGGACTGGGGGCGGGCAGAAAGGTGAGGGCTACCGAAACACTAGGAGGTGAAGTTTGTTCCGAAGCCTTCAGTTTGGCTGGATGAGATCACTTGGGAAACGCTCCTTTATTAAATCAAAGTGGGTGGGAGACGCAGTGCCCTTTCTTGGTTCTGAGAATGAGGTCTGTAAATTGGGCGAAATTCGGGTGGGTGCGTGCAGTCATCGTGACCCCGTGACCCTATCGCACCCACTCTCCCCAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTACGCGGGCACCCAGTCC
.......................................................................................................................................................................................................................................................................(((((((((((....((((.((......)))))).....))))))))))).........................................................
...............................................................................................................................................................................................................................................................256.............................................................320................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR015362(GSM380327)
Naïve B Cell (Naive138). (B cell)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
GSM532880(GSM532880)
G659T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................GCAGCCTCCGGCGTGGAGAGGGG................................................................................................................................................................................................................................................................................................ 2311.001.00---------------1.00--------------------------------------
...............................................................................................................................................................................AAACGCTCCTTTATTAA.................................................................................................................................................................................. 171.000.00-----1.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................CTGCGACTACGCGGGAA........ 171.000.00--------------------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................CGCACCCACTCTCCCGGC.................................................. 181.000.00-------------------------------------------1.00----------
...............................................................................................................................................GCCTTCAGTTTGGCTGGATGAGAAA.......................................................................................................................................................................................................... 251.000.00------------------1.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCC............................................................. 1411.001.00------1.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................GCGACTACGCGGGCACCC..... 181.000.00-----1.00------------------------------------------------
.................................................................................................................................................................................................................ACGCAGTGCCCTTTCTTGGTTCTGAGAATG................................................................................................................................... 3011.001.00---1.00--------------------------------------------------
...................................................................................................................................GTTTGTTCCGAAGCCTTCAGTTTGGC..................................................................................................................................................................................................................... 2611.001.00----------------------------------------1.00-------------
.....TCCGCTCAGCACATCAC............................................................................................................................................................................................................................................................................................................................................................ 1711.001.00------------------------1.00-----------------------------
......................................................................................................................................TGTTCCGAAGCCTTCAGTTTGGCTGGA................................................................................................................................................................................................................. 2711.001.00--------------------------------1.00---------------------
.........................................................................................................................................................................................................................CCCTTTCTTGGTTCTGAG....................................................................................................................................... 1811.001.00------------1.00-----------------------------------------
...........CAGCACATCACCTCATCA..................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------1.00------------------------------------
...............................................................................GGGACTGGGGGCGGGCAGA................................................................................................................................................................................................................................................................................ 1911.001.00-------------------1.00----------------------------------
..............................................................................................................................................................................................................................................................................................................................AGGCGAGCGGCCCTACAAGTGTC............................. 2311.001.00---------1.00--------------------------------------------
..........TCAGCACATCACCTCAAAG..................................................................................................................................................................................................................................................................................................................................................... 1920.500.50----------------0.50-------------------------------------
.....................................................................GCGTGGAGAGGGGACTG............................................................................................................................................................................................................................................................................................ 1720.500.50----------------0.50-------------------------------------
......................................................................................................................................................................................................................................................................................................................................................GCACTGCGACTAC............... 1350.200.20---0.20--------------------------------------------------
................................................................................................................................................................................................................................................................................................................................GCGAGCGGCCCTACAA.................................. 1670.140.14----0.14-------------------------------------------------
...........................................................................................................................................................................................................................................................................................CGTGACCCCGTGAC......................................................................... 1480.120.12------------------------------------------------0.12-----
....................................................................................................................................................................................................................................................................................................................................................CCGCACTGCGAC.................. 12100.100.10-----------------------------------------------------0.10