ID: uc001uje.5
GENE: ULK1(5)
chr12:132393313-132393492+


(3)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(2)
AGO3.ip
(3)
B-CELL
(5)
BRAIN
(24)
BREAST
(42)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(8)
HEART
(4)
HELA
(9)
LIVER
(3)
OTHER
(1)
RRP40.ip
(46)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCGCGTCAAGATCGGTCAGCCCGCGGGCAGGCAGGCGGGCCCGGCGGGGAGGGGCTCCGGGGCCGGCGCCGGTCCTGACGCTTCTCTCCCGCAGCTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACA
.....................................................................((....))..((((((((..((..((((((((....))))))))..))..))).)))))....................................................
...................................................................68............................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040010(GSM532895)
G529N. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR189783GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040032(GSM532917)
G603N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR189786GSM416733(GSM416733)
HEK293. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040028(GSM532913)
G026N. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
............................................................................................................TCCTGACGCTTCTCTCCCGCAGT.................................................23150.0043.00----1.00-3.002.00----2.001.00-1.00-1.001.00-2.00----1.002.00-2.00------1.001.002.00---1.00---1.00--1.00----1.00-2.002.00-------1.00-----1.00-1.001.00------------1.00-1.001.00--1.00--1.00----1.001.001.001.00----1.001.00-------1.00---------1.001.00-----1.00---------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAG..................................................22143.0043.001.008.00--4.002.00--1.00-2.00-----2.00-1.001.00-1.00-1.00-1.001.00-----2.00----------1.00-1.00----1.002.00------2.00----------------1.00------1.00-----------------------1.00----1.00-------1.00---------1.00-----1.00--1.00-----------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGA.................................................23123.0043.00--------4.00--1.00-2.00-----1.00---1.00----1.00---1.00-----1.00---2.00--------------1.00-------------------1.00-1.00----------------1.001.00-------1.00----------------1.00-1.00-----1.00-------------------------
............................................................................................................TCCTGACGCTTCTCTCCCG.....................................................19122.0022.0014.00------------1.00----------2.00----2.00---------2.00-----------------------------1.00--------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCA...................................................21115.0015.00------2.002.00-------1.001.00--1.001.00----1.00-1.00----------1.00----------------------------1.00--------1.00------------------------------------------------------------1.00-----1.00------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGT.................................................22112.001.00-----1.00------1.00-1.00-------------------------1.00--1.00----1.002.00------------------1.00---------------1.00------------------------------1.00----------------------------1.00-----------
............................AACAGCATCCGCGTCAAGATCGG.................................................................................................................................2319.009.00--9.00---------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGC....................................................2019.009.00-2.00---------------------------1.00---------------------------1.00--------1.00----------------------------------------1.00------1.00-----------1.00--------------------1.00--------
............................................................................................................TCCTGACGCTTCTCTCCCGCAT..................................................2217.0015.00-------1.00-------------------2.00----------------------------------------------1.00---1.00------1.00---------------------------------------1.00------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTT................................................2416.0043.00--------------1.00------1.00-------------------1.00---------------------------------------------1.00----------------1.00---------------------------1.00-----------------------
.................................CATCCGCGTCAAGATCG..................................................................................................................................1715.005.00--------------------------------------------1.00-------1.00----------1.00-----------------1.00-------------------------------1.00------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGA.................................................2214.001.00----------1.00----------1.00--------------------------------1.00-------------------------------------------------------1.00---------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTA................................................2414.0043.00----------------------2.00------------------------------------------1.00--------------------------------------------------------------------------1.00---------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATT.................................................2313.0015.00----------------------------------------------1.00------------------------------------1.00---------------------------------------------------------1.00--------------
........................................................................GGGCCCGGCGGGGAGGGT..........................................................................................183.000.00---------3.00--------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAG...................2312.002.00--------------2.00---------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAG..................................................2012.002.00----------------------------------1.00----------------------------------------------------------1.00--------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGC.................................................2312.002.00----------------------------------------1.00----------------------------------------------------------1.00--------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCG.....................................................1812.002.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCA...................................................2012.002.00----------------------------------------------1.00-----------------------------------------------------------------1.00-------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTAT...............................................2512.0043.00----1.00---------------------------------------1.00---------------------------------------------------------------------------------------------------------------
........................CCCCAACAGCATCCGCGTCAAGATCG..................................................................................................................................2612.002.00-----------------------------------------------------------1.00----------------------------------------------------------------------------------1.00-------------
................CGCGCCAACCCCAACAGCATCCGCGT..........................................................................................................................................2611.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00------------------------
.AACCCCGCCGGCCGCCGCGCC..............................................................................................................................................................2111.001.00--------------------------------------------------------------------------------1.00---------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATTT................................................2411.0015.00----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAGTTT...............................................2311.002.00------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................CTGACTTCGGCTTCGCGCGGTACC..........................2411.001.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................ACCTCCAGAGCAACATGA...........1811.001.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCACTT................................................2411.0015.00-------------------------------------------------------------------------------------------------------------------------------------------1.00----------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTAAT..............................................2611.0043.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TCGCGCGGTACCTCCAGAGCAACATGATGG........3011.001.00-------------------------------------------------------------1.00----------------------------------------------------------------------------------------------
..........................................................................GCCCGGCGGGGAGGGT..........................................................................................161.000.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
........................CCCCAACAGCATCCGCGTCAAGATC...................................................................................................................................2511.001.00----------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCC...................................................2111.009.00--------------------------------------------------------------------------------------------------------------------------------------------------1.00---------
.................................................................................................................................................CGCGGTACCTCCAGAGC..................1711.001.00----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................GGGCCCGGCGGGGAGGGC..........................................................................................181.000.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................GGCCCGGCGGGGAGGTG..........................................................................................171.000.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAT..................................................2111.002.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCT...................................................2111.009.00------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
.........................CCCAACAGCATCCGC............................................................................................................................................1511.001.00-------------------------------------------------------------------------------------------1.00----------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGAA................................................2411.0043.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CGGTCCTGACGCTTCTCTCCCGCAGA.................................................261.000.00------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGAT................................................2411.0043.00--------------------------------------------------------------------------------------------------1.00---------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAGCAACA..............2811.001.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATAA................................................2411.0015.00----------------------------------------------------------------------------------------------------------------------1.00-------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGATT...............................................2511.0043.00------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------
..............................................ATCGGTCAGCCCGCGGGCAGGC................................................................................................................2211.001.00--------------------------------------------------------------1.00---------------------------------------------------------------------------------------------
..........................................................................GCCCGGCGGGGAGGGTGG........................................................................................181.000.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
...CCCCGCCGGCCGCCGGGC...............................................................................................................................................................181.000.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.......................ACCCCAACAGCATCCGCGTCA........................................................................................................................................2111.001.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATA.................................................2311.0015.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................AGCATCCGCGTCAAGATCG..................................................................................................................................1911.001.00-------------------------------------------------------------------------------------------------------------------------------------------------1.00----------
..............................................................................................................................................................GAGCAACATGATGGCGGCCAC.2111.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................GGCCGGCGCCGGTCCGGCT.................................................................191.000.00----------------------------------------------------------------------------------------------1.00-------------------------------------------------------------
...........................................................................CCCGGCGGGGAGGGGCTCC......................................................................................1911.001.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
........................................................CCGCGGGCAGGCAGGCG...........................................................................................................1711.001.00------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAGCAACAT.............2911.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAGG.................................................2111.002.00---------------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.........................................................................GGCCCGGCGGGGAGGTGG.........................................................................................181.000.00----------------------------------------------------1.00-------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAG..................................................2111.001.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
.....................................................................GGCGGGCCCGGCGGGGGCGG...........................................................................................201.000.00------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------
.........................................................................................GCTCCGGGGCCGGCGCCGGTCCTGAC.................................................................2611.001.00--------------------------------------------------1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................GGTCCTGACGCTTCTCTCCCGCAGA.................................................251.000.00--------------------------------------------------------------------------------------------------------------------1.00---------------------------------------
...........................................................................CCCGGCGGGGAGGGGCCGC......................................................................................191.000.00-----------------------------------------------------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGAT................................................2311.001.00-------------------------------------------------------------------------------------------------------------------------1.00----------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAAT.................................................2311.0015.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................GGGGCTCCGGGGCCGCCGG...........................................................................191.000.00----------------------------------------------------------------------------------------------------------------------------------------1.00-------------------
............................................................................................................TCCTGACGCTTCTCTCCCGTAG..................................................2211.0022.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCCA....................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................CGGGCCCGGCGGGGAGGGT..........................................................................................191.000.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................CCCGGCGGGGAGGGGCTC.......................................................................................1811.001.00------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................................CGGTCCTGACGCTTCTCTCCCGCAGAA................................................271.000.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCCG..................................................2211.009.00-------------------------------------------------------------------------------------------------------------------------------------1.00----------------------
.........................................................................GGCCCGGCGGGGAGGG...........................................................................................1650.600.60--0.20------------------------------0.20--------------------------------------------------------------------------------------------------------------------0.20-----
................................................................................................GGCCGGCGCCGGTC......................................................................1420.500.50-----------0.50------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CGCGGTACCTCCAGA....................1520.500.50---0.50--------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................AGGCAGGCGGGCCCGG....................................................................................................1620.500.50----------------------------------------------------------------------------------------------------------------------------------------------------0.50-------
.........................................................CGCGGGCAGGCAGGC............................................................................................................1570.140.14-------------------------------------------------------------------------------------------------------------------------------------------------------0.14----
...........................................................CGGGCAGGCAGGCGGGC........................................................................................................17100.100.10-------------------------------------------------------------0.10----------------------------------------------------------------------------------------------

Antisense strand
CAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCGCGTCAAGATCGGTCAGCCCGCGGGCAGGCAGGCGGGCCCGGCGGGGAGGGGCTCCGGGGCCGGCGCCGGTCCTGACGCTTCTCTCCCGCAGCTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACA
.....................................................................((....))..((((((((..((..((((((((....))))))))..))..))).)))))....................................................
...................................................................68............................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040010(GSM532895)
G529N. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR189783GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040032(GSM532917)
G603N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR189786GSM416733(GSM416733)
HEK293. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040028(GSM532913)
G026N. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
....CCCGCCGGCCGCCGCG................................................................................................................................................................ 1694.114.11---2.67-------1.33---0.11--------------------------------------------------------------------------------------------------------------------------------------------
.............................................GATCGGTCAGCCCG......................................................................................................................... 1413.003.00-------------------------------3.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................GGCGGGCCCGGCGGGCCCC............................................................................................ 192.000.00---2.00--------------------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCTGA.............................................................................................................................................................. 181.000.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................GGCAGGCGGGCCCGGCGGGG............................................................................................... 2011.001.00------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
....CCCGCCGGCCGCCGCGCGG............................................................................................................................................................. 190.440.00---0.11------------------------------0.22-----------------------------------------------------------------------------------------------------------------------0.11-
...CCCCGCCGGCCGCCGCG................................................................................................................................................................ 1770.430.43---0.14-------0.29------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................GCGGTACCTCCAGA.................... 1430.330.33-----------------------------------------------------------------------------------------------------------------------------------------------------0.33------
....CCCGCCGGCCGCCGCGTG.............................................................................................................................................................. 180.330.00-----------0.33------------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGT............................................................................................................................................................... 170.220.00----------------0.11-------------------------------------------0.11-----------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGCGGG............................................................................................................................................................ 200.220.00--0.11------------------------------------------------------------------------------------------------------------------------------------------------------0.11--
............CCGCCGCGCCAAC........................................................................................................................................................... 1360.170.17---------------------------------0.17--------------------------------------------------------------------------------------------------------------------------
.................................................................................................GCCGGCGCCGGTC...................................................................... 1390.110.11-----------------------------------------------------------0.11------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGAGC............................................................................................................................................................. 190.110.00-----------------------------------------------------------------------------------------------------------------------------------------------------------0.11
....CCCGCCGGCCGCCGCGCGGT............................................................................................................................................................ 200.110.00--------------------------------------------------------------------------------------------------------------------------------------------------------0.11---