ID: uc001qds.7
GENE: ST3GAL4(7)
chr11:126278963-126279212+


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(10)
BREAST 		(22)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(6)
HELA 		(2)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTTTCCTCCTCTCTTTCCCTGGTCCTCTCCTGGTCTCCCATCTGTGGCACAGACTTCACCTCCCTTTCCTCTCACCTTGTGCTCCTGAAGGCCTCTGCCATCGCTTGGACCCCCTCGCCTCGCTGAGGACCACTGGGTTGGATTTGAGAAACAGGGCTTCACCCGCTTCTGTCTCTCTCTTCTGACCCCATCCTCCTAGGTGCGAAAGGGTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCC
.......................................................................................................................................((((..((...((((.(((((((.......))).)))).))))...))..)))).............................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782GSM339996(GSM339996)
hues6Neuron. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038861(GSM458544)
MM466. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR343334SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785GSM532876(GSM532876)
G547T. (cervix)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR343335SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577738(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................TGGGTTGGATTTGAGAAACAGG..............................................................................................22137.0037.0018.007.001.00-1.00---2.002.00------------1.00------1.00-----------1.00----1.00-----------1.00-------1.00-----
....................................................................................................................................ACTGGGTTGGATTTGAGAAAC.................................................................................................21128.0028.0022.001.00--1.00--2.00----------1.00--------------------1.00--------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAGG..............................................................................................23123.0023.002.00--10.003.00----1.00--2.00--1.00-1.00------------------------1.00------1.00----------1.00-----------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAG...............................................................................................23119.0019.0011.002.00--1.00---1.00---1.001.00-------------------------------1.00------1.00-------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGG..............................................................................................24115.0015.007.001.00--1.00--------1.00--2.00-------2.00----------1.00------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAG...............................................................................................21112.0012.002.003.002.00-1.00--1.00--1.00------1.00---------------------------------------------------1.00--
....................................................................................................................................ACTGGGTTGGATTTGAGAAACA................................................................................................22111.0011.004.00-2.00-------1.00--------2.00---------------------------------------1.00----1.00-------
..........................................................................................................................................................................TGTCTCTCTCTTCTGACCCCAT..........................................................2217.007.00------6.00--------------------------1.00--------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAG...............................................................................................2215.005.001.001.00-----2.00--------------------------------1.00-------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGGA.............................................................................................2315.0037.00--3.00-1.00--------------------------------------------------1.00----------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAA..................................................................................................2015.005.002.00----------------------1.00--1.00------------------------------1.00--------------
....................................................................................................................................ACTGGGTTGGATTTGAGA....................................................................................................1814.004.003.00--------------------------------------------------1.00--------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAA...............................................................................................2313.0011.003.00-----------------------------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAGGT.............................................................................................2413.0023.00----------------------1.00------------------------------------------1.00-1.00----
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAG.....................................................................................................2512.002.00-----------2.00------------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCCATCCTCCACCG.................................................222.000.00----------------------------1.00-----1.00-------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACA................................................................................................2112.002.00--------------------2.00---------------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTT........................................................................................................2212.002.00-----2.00------------------------------------------------------------------
.............................................................................................................................GAGGACCACTGGGTTGGATTTGAGAAAC.................................................................................................2811.001.00-----1.00------------------------------------------------------------------
.......................................................................................................................................GGGTTGGATTTGAGAAACAGGGTT...........................................................................................241.000.00------------------------------1.00-----------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAA..................................................................................................1911.001.00----------1.00-------------------------------------------------------------
................................................................................................................CCCTCGCCTCGCTGAGGACCACTGGGTTGGATTTGAGAAACAGGGCTTCACCCGCTTCTGTCTCTCTCTTCTGACCCCATCCTCCTAGA.................................................891.000.00------------------------------------------------1.00-----------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAACCAG...............................................................................................221.000.00-------------------------1.00----------------------------------------------
.......................................................................................................................................................................................................................TGGAAACAGCCTCCCCTCTCCG.............221.000.00-----------1.00------------------------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAGAAACAGGG.............................................................................................3311.001.00------------------1.00-----------------------------------------------------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAGA.................................................2311.001.00--------------------------------------------------------1.00---------------
....................................................................................................................................ACTGGGTTGGATTTGAGAA...................................................................................................1911.001.001.00-----------------------------------------------------------------------
..............................CTGGTCTCCCATCTGAAC..........................................................................................................................................................................................................181.000.00-------------------------------------1.00----------------------------------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAGGTGCA.............................................271.000.00-----------------------------------------------------1.00------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGA..............................................................................................2211.0012.00--------1.00---------------------------------------------------------------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAGAA................................................2411.001.00---------------1.00--------------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAGA..............................................................................................2311.005.00--------------------------------------------------------------1.00---------
.....................................................................................................................................CTGGGTTGGATTTGAGAAG..................................................................................................191.000.00--1.00---------------------------------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGGTTT........................................................................................................221.000.00-----1.00------------------------------------------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGGC.............................................................................................2511.0015.00--------------------------------------------1.00---------------------------
............................................................................................................................................GGATTTGAGAAACAGGGCTT..........................................................................................2011.001.00--------------------------------------------------------------------1.00---
.......................................................................................................................................................................................................GGTGCGAAAGGGTTTCTGGAAACAGCC........................2711.001.00------------------------------------------------------1.00-----------------
......................................................................................................................................TGGGTTGGATTTGAGAAGCAG...............................................................................................211.000.00-------------------------------------------1.00----------------------------
..................................................................................................................................................................................................TCCTAGGTGCGAAAGA........................................161.000.00------------------------------------1.00-----------------------------------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAG..................................................2211.001.00--------------------------------------------------1.00---------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAAC.................................................................................................2011.001.001.00-----------------------------------------------------------------------
.......................................................................................................................................GGGTTGGATTTGAGAAACAGG..............................................................................................2111.001.00--1.00---------------------------------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAGAAACAG...............................................................................................3111.001.00---------------------------------------------------------------1.00--------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAGAAAC.................................................................................................2911.001.00-----1.00------------------------------------------------------------------
............................................................................CTTGTGCTCCTGAAGGG.............................................................................................................................................................171.000.00-----------------------1.00------------------------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGT..............................................................................................2411.0019.00---------1.00--------------------------------------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGGGCTTCACC......................................................................................3211.001.00--1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................GGTTTCTGGAAACAGCCTCCCC...................2211.001.00--------------1.00---------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAAC.................................................................................................1911.001.001.00-----------------------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGGT.............................................................................................2311.0037.001.00-----------------------------------------------------------------------
..........................................................................................................................................TTGGATTTGAGAAACAGGGCTTCA........................................................................................2411.001.001.00-----------------------------------------------------------------------
............................................................................................................GACCCCCTCGCCTCGGCGG...........................................................................................................................191.000.00-------------------------------------------------------------1.00----------
......................................................................................................................................................................................................................CTGGAAACAGCCTCCCCTC.................1911.001.00--------------------------------1.00---------------------------------------
............................................................................................................................................................................TCTCTCTCTTCTGACCCCATCCTCC.....................................................2511.001.00-------------------------------1.00----------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAAGA................................................................................................201.000.00-------------1.00----------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGGAA............................................................................................2411.0037.00---------------------------1.00--------------------------------------------
.......................................................................................................................................GGGTTGGATTTGAGAAACAGGGCTTCA........................................................................................2711.001.00--1.00---------------------------------------------------------------------

Antisense strand
CCTTTCCTCCTCTCTTTCCCTGGTCCTCTCCTGGTCTCCCATCTGTGGCACAGACTTCACCTCCCTTTCCTCTCACCTTGTGCTCCTGAAGGCCTCTGCCATCGCTTGGACCCCCTCGCCTCGCTGAGGACCACTGGGTTGGATTTGAGAAACAGGGCTTCACCCGCTTCTGTCTCTCTCTTCTGACCCCATCCTCCTAGGTGCGAAAGGGTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCC
.......................................................................................................................................((((..((...((((.(((((((.......))).)))).))))...))..)))).............................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782GSM339996(GSM339996)
hues6Neuron. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038861(GSM458544)
MM466. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR343334SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785GSM532876(GSM532876)
G547T. (cervix)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR343335SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577738(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................................................................CAGCCTCCCCTCATCTGCT.......... 191.000.00--------------1.00---------------------------------------------------------
.............................................................................................................................................................CTTCACCCGCTTCTGATGT.......................................................................... 191.000.00-----1.00------------------------------------------------------------------
...........................................................CCTCCCTTTCCTCTCACC............................................................................................................................................................................. 1811.001.00---------------------1.00--------------------------------------------------
......................................................................................................................................................AACAGGGCTTCACCCGCGCT................................................................................ 201.000.00-----------------------------------------------1.00------------------------
.....CCTCCTCTCTTTCCCTGGGTG................................................................................................................................................................................................................................ 211.000.00--1.00---------------------------------------------------------------------
..................................................................................................CCATCGCTTGGACCCCTCCT.................................................................................................................................... 201.000.00---------------------1.00--------------------------------------------------
..............................................................................................................................................................................TCTCTCTTCTGACCCCATCCTCCTAGG................................................. 2711.001.00--------------------------------------1.00---------------------------------
...............................................................................................................................................................................................................................GCCTCCCCTCATCTGG........... 1630.330.33----------------------------------------------------------------------0.33-
.......................................................................................................................................................................................................................................TCATCTGGGATGTCA.... 1570.140.14-----------------------------------------------------------------------0.14